RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 PGM2Q96G03 612 aa10.9□□□□□ -0.66
VPS39-214ENST00000614932 EYA3Q99504 573 aa10.9□□□□□ -0.66
VPS39-214ENST00000614932 SLC39A3Q9BRY0 314 aa10.9□□□□□ -0.66
VPS39-214ENST00000614932 TBC1D10AQ9BXI6 508 aa10.9□□□□□ -0.66
VPS39-214ENST00000614932 NDEL1Q9GZM8 345 aa10.9□□□□□ -0.66
VPS39-214ENST00000614932 KLHL14Q9P2G3 628 aa10.9□□□□□ -0.66
VPS39-214ENST00000614932 PCDHAC2Q9Y5I4 1007 aa10.9□□□□□ -0.66
VPS39-214ENST00000614932 KCNJ18B7U540 433 aa10.9□□□□□ -0.66
VPS39-214ENST00000614932 E9PBE3 544 aa10.9□□□□□ -0.66
VPS39-214ENST00000614932 STRNO43815 780 aa10.9□□□□□ -0.66
VPS39-214ENST00000614932 KCNJ12Q14500 433 aa10.9□□□□□ -0.66
VPS39-214ENST00000614932 IL17AQ16552 155 aa10.9□□□□□ -0.66
VPS39-214ENST00000614932 KHDC1Q4VXA5 237 aaKnown RBP10.9□□□□□ -0.66
VPS39-214ENST00000614932 C6orf183Q5T699 404 aa10.9□□□□□ -0.66
VPS39-214ENST00000614932 TMC3Q7Z5M5 1100 aa10.9□□□□□ -0.66
VPS39-214ENST00000614932 C11orf74Q86VG3 221 aa10.9□□□□□ -0.66
VPS39-214ENST00000614932 BPHLQ86WA6 291 aaPredicted RBP10.9□□□□□ -0.66
VPS39-214ENST00000614932 NUP93Q8N1F7 819 aa10.9□□□□□ -0.66
VPS39-214ENST00000614932 BBS5Q8N3I7 341 aa10.9□□□□□ -0.66
VPS39-214ENST00000614932 LRRC4CQ9HCJ2 640 aa10.9□□□□□ -0.66
VPS39-214ENST00000614932 TRPC7Q9HCX4 862 aa10.9□□□□□ -0.66
VPS39-214ENST00000614932 MAD2L2Q9UI95 211 aa10.9□□□□□ -0.66
VPS39-214ENST00000614932 A0A1W2PQC6 194 aa10.9□□□□□ -0.67
VPS39-214ENST00000614932 PFKFB3Q16875 520 aaPredicted RBP10.9□□□□□ -0.67
VPS39-214ENST00000614932 UNC13DQ70J99 1090 aa10.9□□□□□ -0.67
VPS39-214ENST00000614932 LRRC47Q8N1G4 583 aaKnown RBP10.9□□□□□ -0.67
VPS39-214ENST00000614932 MB21D1Q8N884 522 aa10.9□□□□□ -0.67
VPS39-214ENST00000614932 CERKQ8TCT0 537 aa10.9□□□□□ -0.67
VPS39-214ENST00000614932 ITPKCQ96DU7 683 aa10.9□□□□□ -0.67
VPS39-214ENST00000614932 CCDC42Q96M95 316 aa10.9□□□□□ -0.67
VPS39-214ENST00000614932 IFIH1Q9BYX4 1025 aaKnown RBP10.9□□□□□ -0.67
VPS39-214ENST00000614932 SLC7A5P2Q9GIP4 190 aa10.9□□□□□ -0.67
VPS39-214ENST00000614932 IRF2BPLQ9H1B7 796 aa10.9□□□□□ -0.67
VPS39-214ENST00000614932 NEUROG2Q9H2A3 272 aa10.9□□□□□ -0.67
VPS39-214ENST00000614932 CCDC68Q9H2F9 335 aa10.9□□□□□ -0.67
VPS39-214ENST00000614932 SEC63Q9UGP8 760 aaKnown RBP10.9□□□□□ -0.67
VPS39-214ENST00000614932 CCPG1Q9ULG6 757 aa10.9□□□□□ -0.67
VPS39-214ENST00000614932 GPC6Q9Y625 555 aaPredicted RBP10.9□□□□□ -0.67
VPS39-214ENST00000614932 MYH6P13533 1939 aa10.89□□□□□ -0.67
VPS39-214ENST00000614932 FLT1P17948 1338 aa10.89□□□□□ -0.67
VPS39-214ENST00000614932 FAM196BA6NMK8 535 aa10.89□□□□□ -0.67
VPS39-214ENST00000614932 TCP11X1B4DZS4 312 aa10.89□□□□□ -0.67
VPS39-214ENST00000614932 G3V3G9 751 aa10.89□□□□□ -0.67
VPS39-214ENST00000614932 PPEF1O14829 653 aaPredicted RBP10.89□□□□□ -0.67
VPS39-214ENST00000614932 ATP2B4P23634 1241 aa10.89□□□□□ -0.67
VPS39-214ENST00000614932 HOXD10P28358 340 aa10.89□□□□□ -0.67
VPS39-214ENST00000614932 GSTO1P78417 241 aa10.89□□□□□ -0.67
VPS39-214ENST00000614932 MSLNQ13421 630 aaPredicted RBP10.89□□□□□ -0.67
VPS39-214ENST00000614932 CERKLQ49MI3 558 aaPredicted RBP10.89□□□□□ -0.67
VPS39-214ENST00000614932 DCAF8Q5TAQ9 597 aa10.89□□□□□ -0.67
VPS39-214ENST00000614932 TMEM214Q6NUQ4 689 aaKnown RBP10.89□□□□□ -0.67
VPS39-214ENST00000614932 VSIG1Q86XK7 387 aa10.89□□□□□ -0.67
VPS39-214ENST00000614932 KLHL7Q8IXQ5 586 aa10.89□□□□□ -0.67
VPS39-214ENST00000614932 CEP70Q8NHQ1 597 aa10.89□□□□□ -0.67
VPS39-214ENST00000614932 CEP95Q96GE4 821 aa10.89□□□□□ -0.67
VPS39-214ENST00000614932 TUT1Q9H6E5 874 aaKnown RBP10.89□□□□□ -0.67
VPS39-214ENST00000614932 DBNDD1Q9H9R9 158 aa10.89□□□□□ -0.67
VPS39-214ENST00000614932 CTNND2Q9UQB3 1225 aa10.89□□□□□ -0.67
VPS39-214ENST00000614932 HBS1LQ9Y450 684 aaKnown RBP10.89□□□□□ -0.67
VPS39-214ENST00000614932 PCDHA13Q9Y5I0 950 aa10.89□□□□□ -0.67
VPS39-214ENST00000614932 NHSQ6T4R5 1651 aa10.89□□□□□ -0.67
VPS39-214ENST00000614932 TESPA1A2RU30 521 aaPredicted RBP10.89□□□□□ -0.67
VPS39-214ENST00000614932 HGSO14964 777 aaPredicted RBP10.89□□□□□ -0.67
VPS39-214ENST00000614932 ZNF263O14978 683 aa10.89□□□□□ -0.67
VPS39-214ENST00000614932 LDHCP07864 332 aa10.89□□□□□ -0.67
VPS39-214ENST00000614932 EPHB2P29323 1055 aa10.89□□□□□ -0.67
VPS39-214ENST00000614932 RASSF2P50749 326 aa10.89□□□□□ -0.67
VPS39-214ENST00000614932 CCR3P51677 355 aa10.89□□□□□ -0.67
VPS39-214ENST00000614932 CNGA2Q16280 664 aa10.89□□□□□ -0.67
VPS39-214ENST00000614932 CRY2Q49AN0 593 aa10.89□□□□□ -0.67
VPS39-214ENST00000614932 SPDYCQ5MJ68 293 aa10.89□□□□□ -0.67
VPS39-214ENST00000614932 KLHDC7AQ5VTJ3 777 aa10.89□□□□□ -0.67
VPS39-214ENST00000614932 INTS8Q75QN2 995 aaKnown RBP10.89□□□□□ -0.67
VPS39-214ENST00000614932 DDX42Q86XP3 938 aaKnown RBP eCLIP10.89□□□□□ -0.67
VPS39-214ENST00000614932 FAM186BQ8IYM0 893 aa10.89□□□□□ -0.67
VPS39-214ENST00000614932 TNFRSF25Q93038 417 aa10.89□□□□□ -0.67
VPS39-214ENST00000614932 SSX2IPQ9Y2D8 614 aa10.89□□□□□ -0.67
VPS39-214ENST00000614932 GIT1Q9Y2X7 761 aa10.89□□□□□ -0.67
VPS39-214ENST00000614932 KLRF2D3W0D1 207 aa10.88□□□□□ -0.67
VPS39-214ENST00000614932 CAPN9O14815 690 aa10.88□□□□□ -0.67
VPS39-214ENST00000614932 APBA3O96018 575 aa10.88□□□□□ -0.67
VPS39-214ENST00000614932 RCAN1P53805 252 aa10.88□□□□□ -0.67
VPS39-214ENST00000614932 COL23A1Q86Y22 540 aaPredicted RBP10.88□□□□□ -0.67
VPS39-214ENST00000614932 ANKRD13BQ86YJ7 626 aa10.88□□□□□ -0.67
VPS39-214ENST00000614932 CROCCP3Q8IVE0 287 aa10.88□□□□□ -0.67
VPS39-214ENST00000614932 BLIDQ8IZY5 108 aa10.88□□□□□ -0.67
VPS39-214ENST00000614932 TTC39CQ8N584 583 aa10.88□□□□□ -0.67
VPS39-214ENST00000614932 ANKLE1Q8NAG6 615 aa10.88□□□□□ -0.67
VPS39-214ENST00000614932 EEF2KMTQ96G04 330 aa10.88□□□□□ -0.67
VPS39-214ENST00000614932 PAGE5Q96GU1 130 aa10.88□□□□□ -0.67
VPS39-214ENST00000614932 STK33Q9BYT3 514 aa10.88□□□□□ -0.67
VPS39-214ENST00000614932 METTL5Q9NRN9 209 aaKnown RBP10.88□□□□□ -0.67
VPS39-214ENST00000614932 SCHIP1Q9P0W5 487 aaPredicted RBP10.88□□□□□ -0.67
VPS39-214ENST00000614932 HAO1Q9UJM8 370 aa10.88□□□□□ -0.67
VPS39-214ENST00000614932 TRIM17Q9Y577 477 aa10.88□□□□□ -0.67
VPS39-214ENST00000614932 DYNC1LI1Q9Y6G9 523 aaKnown RBP10.88□□□□□ -0.67
VPS39-214ENST00000614932 THSD7AQ9UPZ6 1657 aa10.88□□□□□ -0.67
VPS39-214ENST00000614932 TAF1LQ8IZX4 1826 aa10.88□□□□□ -0.67
VPS39-214ENST00000614932 ADCY3O60266 1144 aa10.88□□□□□ -0.67
VPS39-214ENST00000614932 PCP11498 1178 aaKnown RBP10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms