RNA–Protein interactions for RNA: ENST00000613788.1

CD48-203, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,500 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-203ENST00000613788 MRPL10Q7Z7H8 261 aaKnown RBP16.01■□□□□ 0.15
CD48-203ENST00000613788 ECHDC2Q86YB7 292 aa16.01■□□□□ 0.15
CD48-203ENST00000613788 FAM114A1Q8IWE2 563 aa16.01■□□□□ 0.15
CD48-203ENST00000613788 SMG8Q8ND04 991 aaKnown RBP16.01■□□□□ 0.15
CD48-203ENST00000613788 EEF2KMTQ96G04 330 aa16.01■□□□□ 0.15
CD48-203ENST00000613788 THAP9Q9H5L6 903 aa16.01■□□□□ 0.15
CD48-203ENST00000613788 RPF1Q9H9Y2 349 aaKnown RBP16.01■□□□□ 0.15
CD48-203ENST00000613788 CPSF3Q9UKF6 684 aaKnown RBP16.01■□□□□ 0.15
CD48-203ENST00000613788 GOLGA6L19H0YKK7 550 aa16■□□□□ 0.15
CD48-203ENST00000613788 SLC16A3O15427 465 aaKnown RBP16■□□□□ 0.15
CD48-203ENST00000613788 FAM189A1O60320 539 aa16■□□□□ 0.15
CD48-203ENST00000613788 AKAP3O75969 853 aa16■□□□□ 0.15
CD48-203ENST00000613788 ITGA4P13612 1032 aa16■□□□□ 0.15
CD48-203ENST00000613788 SEZ6Q53EL9 994 aa16■□□□□ 0.15
CD48-203ENST00000613788 ZNF365Q70YC5 407 aa16■□□□□ 0.15
CD48-203ENST00000613788 C16orf59Q7L2K0 433 aa16■□□□□ 0.15
CD48-203ENST00000613788 DHX40Q8IX18 779 aaKnown RBP16■□□□□ 0.15
CD48-203ENST00000613788 FAM186BQ8IYM0 893 aa16■□□□□ 0.15
CD48-203ENST00000613788 CEP120Q8N960 986 aa16■□□□□ 0.15
CD48-203ENST00000613788 LINC01599Q8WXQ3 324 aa16■□□□□ 0.15
CD48-203ENST00000613788 NXF3Q9H4D5 531 aaKnown RBP16■□□□□ 0.15
CD48-203ENST00000613788 ELAC1Q9H777 363 aaKnown RBP16■□□□□ 0.15
CD48-203ENST00000613788 METTL14Q9HCE5 456 aaKnown RBP16■□□□□ 0.15
CD48-203ENST00000613788 UBN1Q9NPG3 1134 aa16■□□□□ 0.15
CD48-203ENST00000613788 TOPORSQ9NS56 1045 aaPredicted RBP16■□□□□ 0.15
CD48-203ENST00000613788 SNTG2Q9NY99 539 aa16■□□□□ 0.15
CD48-203ENST00000613788 PARP2Q9UGN5 583 aa16■□□□□ 0.15
CD48-203ENST00000613788 PCDHB7Q9Y5E2 793 aa16■□□□□ 0.15
CD48-203ENST00000613788 TNFSF9P41273 254 aa15.99■□□□□ 0.15
CD48-203ENST00000613788 CASP4P49662 377 aa15.99■□□□□ 0.15
CD48-203ENST00000613788 NCAPHQ15003 741 aa15.99■□□□□ 0.15
CD48-203ENST00000613788 CCDC40Q4G0X9 1142 aa15.99■□□□□ 0.15
CD48-203ENST00000613788 CRELD2Q6UXH1 353 aaPredicted RBP15.99■□□□□ 0.15
CD48-203ENST00000613788 USP37Q86T82 979 aa15.99■□□□□ 0.15
CD48-203ENST00000613788 CBWD2Q8IUF1 395 aa15.99■□□□□ 0.15
CD48-203ENST00000613788 ZSWIM2Q8NEG5 633 aa15.99■□□□□ 0.15
CD48-203ENST00000613788 APOL6Q9BWW8 343 aa15.99■□□□□ 0.15
CD48-203ENST00000613788 FANCLQ9NW38 375 aa15.99■□□□□ 0.15
CD48-203ENST00000613788 TMEM161AQ9NX61 479 aa15.99■□□□□ 0.15
CD48-203ENST00000613788 RBAKQ9NYW8 714 aaPredicted RBP15.99■□□□□ 0.15
CD48-203ENST00000613788 MAGEC2Q9UBF1 373 aaPredicted RBP15.99■□□□□ 0.15
CD48-203ENST00000613788 LRFN2Q9ULH4 789 aa15.99■□□□□ 0.15
CD48-203ENST00000613788 HES2Q9Y543 173 aa15.99■□□□□ 0.15
CD48-203ENST00000613788 SCN5AQ14524 2016 aa15.99■□□□□ 0.15
CD48-203ENST00000613788 LOC101059915A0A1B0GWI6 518 aaPredicted RBP15.99■□□□□ 0.15
CD48-203ENST00000613788 RBAK-RBAKDNI3L0D1 243 aa15.99■□□□□ 0.15
CD48-203ENST00000613788 AMHP03971 560 aa15.99■□□□□ 0.15
CD48-203ENST00000613788 KRT13P13646 458 aa15.99■□□□□ 0.15
CD48-203ENST00000613788 IBSPP21815 317 aaPredicted RBP15.99■□□□□ 0.15
CD48-203ENST00000613788 KCNJ6P48051 423 aa15.99■□□□□ 0.15
CD48-203ENST00000613788 SURF1Q15526 300 aa15.99■□□□□ 0.15
CD48-203ENST00000613788 TMEM240Q5SV17 173 aa15.99■□□□□ 0.15
CD48-203ENST00000613788 ZBTB41Q5SVQ8 909 aa15.99■□□□□ 0.15
CD48-203ENST00000613788 INTS8Q75QN2 995 aaKnown RBP15.99■□□□□ 0.15
CD48-203ENST00000613788 OTOP2Q7RTS6 562 aa15.99■□□□□ 0.15
CD48-203ENST00000613788 FRMD5Q7Z6J6 570 aa15.99■□□□□ 0.15
CD48-203ENST00000613788 ZNF598Q86UK7 904 aaKnown RBP15.99■□□□□ 0.15
CD48-203ENST00000613788 LUZP1Q86V48 1076 aa15.99■□□□□ 0.15
CD48-203ENST00000613788 CD302Q8IX05 232 aa15.99■□□□□ 0.15
CD48-203ENST00000613788 RNF169Q8NCN4 708 aa15.99■□□□□ 0.15
CD48-203ENST00000613788 MFSD14AQ96MC6 490 aa15.99■□□□□ 0.15
CD48-203ENST00000613788 MTIF3Q9H2K0 278 aaKnown RBP15.99■□□□□ 0.15
CD48-203ENST00000613788 PLEKHA5Q9HAU0 1116 aa15.99■□□□□ 0.15
CD48-203ENST00000613788 SAMSN1Q9NSI8 373 aaKnown RBP15.99■□□□□ 0.15
CD48-203ENST00000613788 GIT1Q9Y2X7 761 aa15.99■□□□□ 0.15
CD48-203ENST00000613788 CAPN15O75808 1086 aa15.98■□□□□ 0.15
CD48-203ENST00000613788 RECQL4O94761 1208 aa15.98■□□□□ 0.15
CD48-203ENST00000613788 IL18RAPO95256 599 aa15.98■□□□□ 0.15
CD48-203ENST00000613788 CDK11BP21127 795 aaKnown RBP15.98■□□□□ 0.15
CD48-203ENST00000613788 AKAP5P24588 427 aa15.98■□□□□ 0.15
CD48-203ENST00000613788 EPHB4P54760 987 aa15.98■□□□□ 0.15
CD48-203ENST00000613788 MARSP56192 900 aaKnown RBP15.98■□□□□ 0.15
CD48-203ENST00000613788 CYP24A1Q07973 514 aa15.98■□□□□ 0.15
CD48-203ENST00000613788 ENOX2Q16206 610 aaKnown RBP15.98■□□□□ 0.15
CD48-203ENST00000613788 NPAS4Q8IUM7 802 aa15.98■□□□□ 0.15
CD48-203ENST00000613788 CREBRFQ8IUR6 639 aa15.98■□□□□ 0.15
CD48-203ENST00000613788 BRSK2Q8IWQ3 736 aa15.98■□□□□ 0.15
CD48-203ENST00000613788 TMEM192Q8IY95 271 aa15.98■□□□□ 0.15
CD48-203ENST00000613788 BUD13Q9BRD0 619 aaKnown RBP eCLIP15.98■□□□□ 0.15
CD48-203ENST00000613788 RNF39Q9H2S5 420 aa15.98■□□□□ 0.15
CD48-203ENST00000613788 PCDH10Q9P2E7 1040 aa15.98■□□□□ 0.15
CD48-203ENST00000613788 ARMCX3Q9UH62 379 aaPredicted RBP15.98■□□□□ 0.15
CD48-203ENST00000613788 ZBBXA8MT70 800 aa15.97■□□□□ 0.15
CD48-203ENST00000613788 TULP1O00294 542 aaPredicted RBP15.97■□□□□ 0.15
CD48-203ENST00000613788 HOXA2O43364 376 aa15.97■□□□□ 0.15
CD48-203ENST00000613788 CXCL8P10145 99 aa15.97■□□□□ 0.15
CD48-203ENST00000613788 ATF7P17544 494 aaPredicted RBP15.97■□□□□ 0.15
CD48-203ENST00000613788 EEF1GP26641 437 aaKnown RBP15.97■□□□□ 0.15
CD48-203ENST00000613788 MAGEA10P43363 369 aaPredicted RBP15.97■□□□□ 0.15
CD48-203ENST00000613788 WDR5P61964 334 aaKnown RBP15.97■□□□□ 0.15
CD48-203ENST00000613788 PPP2R3AQ06190 1150 aa15.97■□□□□ 0.15
CD48-203ENST00000613788 ENPEPQ07075 957 aa15.97■□□□□ 0.15
CD48-203ENST00000613788 SPAG1Q07617 926 aa15.97■□□□□ 0.15
CD48-203ENST00000613788 PSMD6Q15008 389 aa15.97■□□□□ 0.15
CD48-203ENST00000613788 SLC10A6Q3KNW5 377 aa15.97■□□□□ 0.15
CD48-203ENST00000613788 CDKAL1Q5VV42 579 aa15.97■□□□□ 0.15
CD48-203ENST00000613788 LIN28BQ6ZN17 250 aaKnown RBP eCLIP15.97■□□□□ 0.15
CD48-203ENST00000613788 AGMOQ6ZNB7 445 aa15.97■□□□□ 0.15
CD48-203ENST00000613788 GAS2L3Q86XJ1 694 aa15.97■□□□□ 0.15
CD48-203ENST00000613788 IRF2BP1Q8IU81 584 aa15.97■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms