RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 CDC42EP1Q00587 391 aa9.63□□□□□ -0.87
SHKBP1-220ENST00000599716 MBTD1Q05BQ5 628 aa9.63□□□□□ -0.87
SHKBP1-220ENST00000599716 DSC1Q08554 894 aa9.63□□□□□ -0.87
SHKBP1-220ENST00000599716 SPIRE1Q08AE8 756 aa9.63□□□□□ -0.87
SHKBP1-220ENST00000599716 SCRN1Q12765 414 aa9.63□□□□□ -0.87
SHKBP1-220ENST00000599716 NR5A1Q13285 461 aa9.63□□□□□ -0.87
SHKBP1-220ENST00000599716 CAPSQ13938 189 aa9.63□□□□□ -0.87
SHKBP1-220ENST00000599716 AMHR2Q16671 573 aa9.63□□□□□ -0.87
SHKBP1-220ENST00000599716 KRT25Q7Z3Z0 450 aa9.63□□□□□ -0.87
SHKBP1-220ENST00000599716 SRGAP1Q7Z6B7 1085 aa9.63□□□□□ -0.87
SHKBP1-220ENST00000599716 RNF168Q8IYW5 571 aaPredicted RBP9.63□□□□□ -0.87
SHKBP1-220ENST00000599716 SLC44A3Q8N4M1 653 aa9.63□□□□□ -0.87
SHKBP1-220ENST00000599716 GSTCDQ8NEC7 633 aa9.63□□□□□ -0.87
SHKBP1-220ENST00000599716 SPDYE1Q8NFV5 336 aaPredicted RBP9.63□□□□□ -0.87
SHKBP1-220ENST00000599716 MTRQ99707 1265 aa9.63□□□□□ -0.87
SHKBP1-220ENST00000599716 PHF20Q9BVI0 1012 aa9.63□□□□□ -0.87
SHKBP1-220ENST00000599716 PIDD1Q9HB75 910 aa9.63□□□□□ -0.87
SHKBP1-220ENST00000599716 ZSWIM6Q9HCJ5 1215 aa9.63□□□□□ -0.87
SHKBP1-220ENST00000599716 WDR6Q9NNW5 1121 aaKnown RBP9.63□□□□□ -0.87
SHKBP1-220ENST00000599716 GPRC5CQ9NQ84 441 aa9.63□□□□□ -0.87
SHKBP1-220ENST00000599716 MYH15Q9Y2K3 1946 aa9.62□□□□□ -0.87
SHKBP1-220ENST00000599716 MTCL1Q9Y4B5 1905 aaKnown RBP9.62□□□□□ -0.87
SHKBP1-220ENST00000599716 CNTNAP2Q9UHC6 1331 aa9.62□□□□□ -0.87
SHKBP1-220ENST00000599716 ADAM12O43184 909 aa9.62□□□□□ -0.87
SHKBP1-220ENST00000599716 GAS2O43903 313 aaKnown RBP9.62□□□□□ -0.87
SHKBP1-220ENST00000599716 SLITRK3O94933 977 aa9.62□□□□□ -0.87
SHKBP1-220ENST00000599716 EFEMP2O95967 443 aa9.62□□□□□ -0.87
SHKBP1-220ENST00000599716 ADH1AP07327 375 aa9.62□□□□□ -0.87
SHKBP1-220ENST00000599716 GLULP15104 373 aa9.62□□□□□ -0.87
SHKBP1-220ENST00000599716 ARF4P18085 180 aaPredicted RBP9.62□□□□□ -0.87
SHKBP1-220ENST00000599716 RFC5P40937 340 aa9.62□□□□□ -0.87
SHKBP1-220ENST00000599716 PTENP60484 403 aa9.62□□□□□ -0.87
SHKBP1-220ENST00000599716 DSG1Q02413 1049 aa9.62□□□□□ -0.87
SHKBP1-220ENST00000599716 EPHA7Q15375 998 aa9.62□□□□□ -0.87
SHKBP1-220ENST00000599716 RTP2Q5QGT7 225 aa9.62□□□□□ -0.87
SHKBP1-220ENST00000599716 FUT10Q6P4F1 479 aa9.62□□□□□ -0.87
SHKBP1-220ENST00000599716 MOXD1Q6UVY6 613 aa9.62□□□□□ -0.87
SHKBP1-220ENST00000599716 C15orf39Q6ZRI6 1047 aa9.62□□□□□ -0.87
SHKBP1-220ENST00000599716 NEK8Q86SG6 692 aa9.62□□□□□ -0.87
SHKBP1-220ENST00000599716 C4orf19Q8IY42 314 aa9.62□□□□□ -0.87
SHKBP1-220ENST00000599716 PIGOQ8TEQ8 1089 aa9.62□□□□□ -0.87
SHKBP1-220ENST00000599716 RTP3Q9BQQ7 232 aa9.62□□□□□ -0.87
SHKBP1-220ENST00000599716 JPH2Q9BR39 696 aaPredicted RBP9.62□□□□□ -0.87
SHKBP1-220ENST00000599716 C22orf23Q9BZE7 217 aa9.62□□□□□ -0.87
SHKBP1-220ENST00000599716 NT5C3AQ9H0P0 336 aa9.62□□□□□ -0.87
SHKBP1-220ENST00000599716 CSRNP2Q9H175 543 aa9.62□□□□□ -0.87
SHKBP1-220ENST00000599716 RXFP1Q9HBX9 757 aa9.62□□□□□ -0.87
SHKBP1-220ENST00000599716 POLD4Q9HCU8 107 aa9.62□□□□□ -0.87
SHKBP1-220ENST00000599716 CYP46A1Q9Y6A2 500 aa9.62□□□□□ -0.87
SHKBP1-220ENST00000599716 NUMBLQ9Y6R0 609 aa9.62□□□□□ -0.87
SHKBP1-220ENST00000599716 CASTOR2A6NHX0 329 aa9.61□□□□□ -0.87
SHKBP1-220ENST00000599716 CTDNEP1O95476 244 aa9.61□□□□□ -0.87
SHKBP1-220ENST00000599716 EDN1P05305 212 aa9.61□□□□□ -0.87
SHKBP1-220ENST00000599716 PROS1P07225 676 aa9.61□□□□□ -0.87
SHKBP1-220ENST00000599716 LIG1P18858 919 aa9.61□□□□□ -0.87
SHKBP1-220ENST00000599716 CD72P21854 359 aa9.61□□□□□ -0.87
SHKBP1-220ENST00000599716 GLRA2P23416 452 aa9.61□□□□□ -0.87
SHKBP1-220ENST00000599716 PPM1JQ5JR12 505 aa9.61□□□□□ -0.87
SHKBP1-220ENST00000599716 PPP4R3AQ6IN85 833 aa9.61□□□□□ -0.87
SHKBP1-220ENST00000599716 NOTUMQ6P988 496 aa9.61□□□□□ -0.87
SHKBP1-220ENST00000599716 PARM1Q6UWI2 310 aa9.61□□□□□ -0.87
SHKBP1-220ENST00000599716 GRASPQ7Z6J2 395 aaPredicted RBP9.61□□□□□ -0.87
SHKBP1-220ENST00000599716 CEP57Q86XR8 500 aa9.61□□□□□ -0.87
SHKBP1-220ENST00000599716 NECAB1Q8N987 351 aa9.61□□□□□ -0.87
SHKBP1-220ENST00000599716 SUMF1Q8NBK3 374 aa9.61□□□□□ -0.87
SHKBP1-220ENST00000599716 CMASQ8NFW8 434 aaPredicted RBP9.61□□□□□ -0.87
SHKBP1-220ENST00000599716 FGF14Q92915 247 aa9.61□□□□□ -0.87
SHKBP1-220ENST00000599716 ZNF274Q96GC6 653 aaPredicted RBP9.61□□□□□ -0.87
SHKBP1-220ENST00000599716 FAM20AQ96MK3 541 aa9.61□□□□□ -0.87
SHKBP1-220ENST00000599716 EIF2AK1Q9BQI3 630 aaKnown RBP9.61□□□□□ -0.87
SHKBP1-220ENST00000599716 TRIM6Q9C030 488 aaPredicted RBP9.61□□□□□ -0.87
SHKBP1-220ENST00000599716 POLR3FQ9H1D9 316 aaPredicted RBP9.61□□□□□ -0.87
SHKBP1-220ENST00000599716 CHST7Q9NS84 486 aa9.61□□□□□ -0.87
SHKBP1-220ENST00000599716 PDRG1Q9NUG6 133 aa9.61□□□□□ -0.87
SHKBP1-220ENST00000599716 IGSF9Q9P2J2 1179 aa9.61□□□□□ -0.87
SHKBP1-220ENST00000599716 KANSL3Q9P2N6 904 aa9.61□□□□□ -0.87
SHKBP1-220ENST00000599716 PARP2Q9UGN5 583 aa9.61□□□□□ -0.87
SHKBP1-220ENST00000599716 DACH1Q9UI36 760 aa9.61□□□□□ -0.87
SHKBP1-220ENST00000599716 VWA8A3KMH1 1905 aa9.6□□□□□ -0.87
SHKBP1-220ENST00000599716 CCL16O15467 120 aa9.6□□□□□ -0.87
SHKBP1-220ENST00000599716 USO1O60763 962 aaKnown RBP9.6□□□□□ -0.87
SHKBP1-220ENST00000599716 KIF4AO95239 1232 aa9.6□□□□□ -0.87
SHKBP1-220ENST00000599716 LARGE1O95461 756 aa9.6□□□□□ -0.87
SHKBP1-220ENST00000599716 SRFP11831 508 aa9.6□□□□□ -0.87
SHKBP1-220ENST00000599716 LAMP2P13473 410 aa9.6□□□□□ -0.87
SHKBP1-220ENST00000599716 GPC5P78333 572 aa9.6□□□□□ -0.87
SHKBP1-220ENST00000599716 SHC2P98077 582 aa9.6□□□□□ -0.87
SHKBP1-220ENST00000599716 SNW1Q13573 536 aaKnown RBP9.6□□□□□ -0.87
SHKBP1-220ENST00000599716 HTR4Q13639 388 aa9.6□□□□□ -0.87
SHKBP1-220ENST00000599716 LILRA6Q6PI73 481 aa9.6□□□□□ -0.87
SHKBP1-220ENST00000599716 ITFG1Q8TB96 612 aa9.6□□□□□ -0.87
SHKBP1-220ENST00000599716 TCP11Q8WWU5 503 aa9.6□□□□□ -0.87
SHKBP1-220ENST00000599716 ING5Q8WYH8 240 aa9.6□□□□□ -0.87
SHKBP1-220ENST00000599716 COLEC11Q9BWP8 271 aa9.6□□□□□ -0.87
SHKBP1-220ENST00000599716 ZSWIM4Q9H7M6 989 aa9.6□□□□□ -0.87
SHKBP1-220ENST00000599716 ARHGEF3Q9NR81 526 aa9.6□□□□□ -0.87
SHKBP1-220ENST00000599716 HCFC1R1Q9NWW0 138 aa9.6□□□□□ -0.87
SHKBP1-220ENST00000599716 DLGAP2Q9P1A6 1054 aa9.6□□□□□ -0.87
SHKBP1-220ENST00000599716 EPS15L1Q9UBC2 864 aa9.6□□□□□ -0.87
SHKBP1-220ENST00000599716 WNT16Q9UBV4 365 aa9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms