RNA–Protein interactions for RNA: ENST00000599454.5

PNKP-212, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 529 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-212ENST00000599454 ZFP37Q9Y6Q3 630 aaPredicted RBP23.44■■□□□ 1.34
PNKP-212ENST00000599454 EP300Q09472 2414 aaPredicted RBP23.43■■□□□ 1.34
PNKP-212ENST00000599454 LRRIQ4A6NIV6 560 aa23.43■■□□□ 1.34
PNKP-212ENST00000599454 USO1O60763 962 aaKnown RBP23.43■■□□□ 1.34
PNKP-212ENST00000599454 ZMYND10O75800 440 aa23.43■■□□□ 1.34
PNKP-212ENST00000599454 MYBP10242 640 aa23.43■■□□□ 1.34
PNKP-212ENST00000599454 LAMP2P13473 410 aa23.43■■□□□ 1.34
PNKP-212ENST00000599454 TUSC3Q13454 348 aa23.43■■□□□ 1.34
PNKP-212ENST00000599454 FAM187BQ17R55 369 aa23.43■■□□□ 1.34
PNKP-212ENST00000599454 CDCA2Q69YH5 1023 aaPredicted RBP23.43■■□□□ 1.34
PNKP-212ENST00000599454 ZBTB8OSQ8IWT0 167 aa23.43■■□□□ 1.34
PNKP-212ENST00000599454 GTF3C6Q969F1 213 aa23.43■■□□□ 1.34
PNKP-212ENST00000599454 B3GALT6Q96L58 329 aa23.43■■□□□ 1.34
PNKP-212ENST00000599454 TUFT1Q9NNX1 390 aa23.43■■□□□ 1.34
PNKP-212ENST00000599454 KLK14Q9P0G3 267 aa23.43■■□□□ 1.34
PNKP-212ENST00000599454 MYO15AQ9UKN7 3530 aa23.42■■□□□ 1.34
PNKP-212ENST00000599454 KRBA1A5PL33 1030 aa23.42■■□□□ 1.34
PNKP-212ENST00000599454 BTBD18B2RXH4 712 aa23.42■■□□□ 1.34
PNKP-212ENST00000599454 ANHXE9PGG2 379 aa23.42■■□□□ 1.34
PNKP-212ENST00000599454 STK25O00506 426 aa23.42■■□□□ 1.34
PNKP-212ENST00000599454 DTNBO60941 627 aa23.42■■□□□ 1.34
PNKP-212ENST00000599454 TRIM29Q14134 588 aa23.42■■□□□ 1.34
PNKP-212ENST00000599454 CDR2LQ86X02 465 aaPredicted RBP23.42■■□□□ 1.34
PNKP-212ENST00000599454 DIS3L2Q8IYB7 885 aaKnown RBP23.42■■□□□ 1.34
PNKP-212ENST00000599454 C2orf40Q9H1Z8 148 aa23.42■■□□□ 1.34
PNKP-212ENST00000599454 SEMA4AQ9H3S1 761 aa23.42■■□□□ 1.34
PNKP-212ENST00000599454 FZD8Q9H461 694 aa23.42■■□□□ 1.34
PNKP-212ENST00000599454 CACNA1IQ9P0X4 2223 aa23.41■■□□□ 1.34
PNKP-212ENST00000599454 POTEMA6NI47 508 aa23.41■■□□□ 1.34
PNKP-212ENST00000599454 N4BP3O15049 544 aa23.41■■□□□ 1.34
PNKP-212ENST00000599454 PHLDB3Q6NSJ2 640 aa23.41■■□□□ 1.34
PNKP-212ENST00000599454 GET4Q7L5D6 327 aaPredicted RBP23.41■■□□□ 1.34
PNKP-212ENST00000599454 GLYCTKQ8IVS8 523 aa23.41■■□□□ 1.34
PNKP-212ENST00000599454 NECAB1Q8N987 351 aa23.41■■□□□ 1.34
PNKP-212ENST00000599454 NSUN7Q8NE18 718 aaKnown RBP23.41■■□□□ 1.34
PNKP-212ENST00000599454 PIK3R5Q8WYR1 880 aa23.41■■□□□ 1.34
PNKP-212ENST00000599454 TTPALQ9BTX7 342 aa23.41■■□□□ 1.34
PNKP-212ENST00000599454 TBC1D17Q9HA65 648 aa23.41■■□□□ 1.34
PNKP-212ENST00000599454 SLC2A4RGQ9NR83 387 aa23.41■■□□□ 1.34
PNKP-212ENST00000599454 FBXW11Q9UKB1 542 aa23.41■■□□□ 1.34
PNKP-212ENST00000599454 CA14Q9ULX7 337 aa23.41■■□□□ 1.34
PNKP-212ENST00000599454 HNRNPA1P09651 372 aaKnown RBP eCLIP23.4■■□□□ 1.34
PNKP-212ENST00000599454 SPATA31C1P0DKV0 1188 aa23.4■■□□□ 1.34
PNKP-212ENST00000599454 RPL17P18621 184 aaKnown RBP23.4■■□□□ 1.34
PNKP-212ENST00000599454 ELAVL2Q12926 359 aaKnown RBP23.4■■□□□ 1.34
PNKP-212ENST00000599454 HTR4Q13639 388 aa23.4■■□□□ 1.34
PNKP-212ENST00000599454 ME3Q16798 604 aa23.4■■□□□ 1.34
PNKP-212ENST00000599454 RTP2Q5QGT7 225 aa23.4■■□□□ 1.34
PNKP-212ENST00000599454 PDXDC1Q6P996 788 aa23.4■■□□□ 1.34
PNKP-212ENST00000599454 ADSSL1Q8N142 457 aa23.4■■□□□ 1.34
PNKP-212ENST00000599454 NACC1Q96RE7 527 aa23.4■■□□□ 1.34
PNKP-212ENST00000599454 GPRC5CQ9NQ84 441 aa23.4■■□□□ 1.34
PNKP-212ENST00000599454 THP07101 528 aa23.39■■□□□ 1.33
PNKP-212ENST00000599454 ATP2B1P20020 1258 aa23.39■■□□□ 1.33
PNKP-212ENST00000599454 LIN9Q5TKA1 542 aa23.39■■□□□ 1.33
PNKP-212ENST00000599454 PRSS55Q6UWB4 352 aaPredicted RBP23.39■■□□□ 1.33
PNKP-212ENST00000599454 RABGGTAQ92696 567 aa23.39■■□□□ 1.33
PNKP-212ENST00000599454 ADPGKQ9BRR6 497 aa23.39■■□□□ 1.33
PNKP-212ENST00000599454 POLR3CQ9BUI4 534 aaPredicted RBP23.39■■□□□ 1.33
PNKP-212ENST00000599454 ARHGEF3Q9NR81 526 aa23.39■■□□□ 1.33
PNKP-212ENST00000599454 WNT7AO00755 349 aa23.38■■□□□ 1.33
PNKP-212ENST00000599454 FSHRP23945 695 aa23.38■■□□□ 1.33
PNKP-212ENST00000599454 HOXA9P31269 272 aa23.38■■□□□ 1.33
PNKP-212ENST00000599454 PRPF4BQ13523 1007 aaKnown RBP23.38■■□□□ 1.33
PNKP-212ENST00000599454 PSMD5Q16401 504 aa23.38■■□□□ 1.33
PNKP-212ENST00000599454 MAPK6Q16659 721 aa23.38■■□□□ 1.33
PNKP-212ENST00000599454 FAM171A1Q5VUB5 890 aa23.38■■□□□ 1.33
PNKP-212ENST00000599454 MAEAQ7L5Y9 396 aa23.38■■□□□ 1.33
PNKP-212ENST00000599454 CATSPER3Q86XQ3 398 aa23.38■■□□□ 1.33
PNKP-212ENST00000599454 ERMNQ8TAM6 284 aa23.38■■□□□ 1.33
PNKP-212ENST00000599454 GPR152Q8TDT2 470 aa23.38■■□□□ 1.33
PNKP-212ENST00000599454 CLSTN3Q9BQT9 956 aa23.38■■□□□ 1.33
PNKP-212ENST00000599454 PAAF1Q9BRP4 392 aa23.38■■□□□ 1.33
PNKP-212ENST00000599454 PDZD7Q9H5P4 517 aa23.38■■□□□ 1.33
PNKP-212ENST00000599454 VPS13AQ96RL7 3174 aa23.38■■□□□ 1.33
PNKP-212ENST00000599454 NOTCH4Q99466 2003 aa23.38■■□□□ 1.33
PNKP-212ENST00000599454 A0A087WWV3 80 aa23.37■■□□□ 1.33
PNKP-212ENST00000599454 CASTOR2A6NHX0 329 aa23.37■■□□□ 1.33
PNKP-212ENST00000599454 ACKR2O00590 384 aa23.37■■□□□ 1.33
PNKP-212ENST00000599454 PTGESO14684 152 aa23.37■■□□□ 1.33
PNKP-212ENST00000599454 RECQL4O94761 1208 aa23.37■■□□□ 1.33
PNKP-212ENST00000599454 KIF4AO95239 1232 aa23.37■■□□□ 1.33
PNKP-212ENST00000599454 TMEM132AQ24JP5 1023 aa23.37■■□□□ 1.33
PNKP-212ENST00000599454 LNX1Q8TBB1 728 aaPredicted RBP23.37■■□□□ 1.33
PNKP-212ENST00000599454 TMEM60Q9H2L4 133 aa23.37■■□□□ 1.33
PNKP-212ENST00000599454 SNTG2Q9NY99 539 aa23.37■■□□□ 1.33
PNKP-212ENST00000599454 NUMBLQ9Y6R0 609 aa23.37■■□□□ 1.33
PNKP-212ENST00000599454 CITO14578 2027 aa23.37■■□□□ 1.33
PNKP-212ENST00000599454 ZNF292O60281 2723 aa23.36■■□□□ 1.33
PNKP-212ENST00000599454 LARGE1O95461 756 aa23.36■■□□□ 1.33
PNKP-212ENST00000599454 POU2F2P09086 479 aa23.36■■□□□ 1.33
PNKP-212ENST00000599454 NAMPTP43490 491 aa23.36■■□□□ 1.33
PNKP-212ENST00000599454 ORC2Q13416 577 aaPredicted RBP23.36■■□□□ 1.33
PNKP-212ENST00000599454 PPP2R5AQ15172 486 aa23.36■■□□□ 1.33
PNKP-212ENST00000599454 SAFBQ15424 915 aaKnown RBP eCLIP23.36■■□□□ 1.33
PNKP-212ENST00000599454 PPM1LQ5SGD2 360 aa23.36■■□□□ 1.33
PNKP-212ENST00000599454 DCLRE1AQ6PJP8 1040 aa23.36■■□□□ 1.33
PNKP-212ENST00000599454 POTEGQ6S5H5 508 aa23.36■■□□□ 1.33
PNKP-212ENST00000599454 CEP57Q86XR8 500 aa23.36■■□□□ 1.33
PNKP-212ENST00000599454 HASPINQ8TF76 798 aa23.36■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms