RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 CRAMP1Q96RY5 1269 aa16.33■□□□□ 0.21
UPF1-204ENST00000596842 TUFT1Q9NNX1 390 aa16.33■□□□□ 0.21
UPF1-204ENST00000596842 TTC7AQ9ULT0 858 aaPredicted RBP16.33■□□□□ 0.21
UPF1-204ENST00000596842 MAST2Q6P0Q8 1798 aa16.33■□□□□ 0.21
UPF1-204ENST00000596842 MIF4GDA9UHW6 222 aaKnown RBP16.33■□□□□ 0.2
UPF1-204ENST00000596842 CYP3A4P08684 503 aa16.33■□□□□ 0.2
UPF1-204ENST00000596842 BRAFP15056 766 aa16.33■□□□□ 0.2
UPF1-204ENST00000596842 EIF2AK2P19525 551 aaKnown RBP16.33■□□□□ 0.2
UPF1-204ENST00000596842 PTGIRP43119 386 aa16.33■□□□□ 0.2
UPF1-204ENST00000596842 PDE6CP51160 858 aa16.33■□□□□ 0.2
UPF1-204ENST00000596842 ELF3P78545 371 aaPredicted RBP16.33■□□□□ 0.2
UPF1-204ENST00000596842 DRP2Q13474 957 aa16.33■□□□□ 0.2
UPF1-204ENST00000596842 RASA3Q14644 834 aa16.33■□□□□ 0.2
UPF1-204ENST00000596842 AOC3Q16853 763 aa16.33■□□□□ 0.2
UPF1-204ENST00000596842 INTS8Q75QN2 995 aaKnown RBP16.33■□□□□ 0.2
UPF1-204ENST00000596842 EXOC3L1Q86VI1 746 aa16.33■□□□□ 0.2
UPF1-204ENST00000596842 ARMC2Q8NEN0 867 aa16.33■□□□□ 0.2
UPF1-204ENST00000596842 CRYGNQ8WXF5 182 aa16.33■□□□□ 0.2
UPF1-204ENST00000596842 POLRMTO00411 1230 aaKnown RBP16.33■□□□□ 0.2
UPF1-204ENST00000596842 RTN2O75298 545 aa16.33■□□□□ 0.2
UPF1-204ENST00000596842 SPAG7O75391 227 aa16.33■□□□□ 0.2
UPF1-204ENST00000596842 XKR9Q5GH70 373 aa16.33■□□□□ 0.2
UPF1-204ENST00000596842 DAW1Q8N136 415 aa16.33■□□□□ 0.2
UPF1-204ENST00000596842 ATXN2LQ8WWM7 1075 aaKnown RBP16.33■□□□□ 0.2
UPF1-204ENST00000596842 ADAM7Q9H2U9 754 aa16.33■□□□□ 0.2
UPF1-204ENST00000596842 PNMA3Q9UL41 463 aa16.33■□□□□ 0.2
UPF1-204ENST00000596842 A8MUI8 341 aa16.32■□□□□ 0.2
UPF1-204ENST00000596842 ALAS1P13196 640 aa16.32■□□□□ 0.2
UPF1-204ENST00000596842 RANBP1P43487 201 aa16.32■□□□□ 0.2
UPF1-204ENST00000596842 MMP13P45452 471 aa16.32■□□□□ 0.2
UPF1-204ENST00000596842 EPS8L1Q8TE68 723 aa16.32■□□□□ 0.2
UPF1-204ENST00000596842 HAUS1Q96CS2 278 aa16.32■□□□□ 0.2
UPF1-204ENST00000596842 MKNK1Q9BUB5 465 aa16.32■□□□□ 0.2
UPF1-204ENST00000596842 TMEM117Q9H0C3 514 aa16.32■□□□□ 0.2
UPF1-204ENST00000596842 ECT2Q9H8V3 914 aa16.32■□□□□ 0.2
UPF1-204ENST00000596842 ARHGEF10LQ9HCE6 1279 aa16.32■□□□□ 0.2
UPF1-204ENST00000596842 PARP2Q9UGN5 583 aa16.32■□□□□ 0.2
UPF1-204ENST00000596842 AGAP1Q9UPQ3 857 aa16.32■□□□□ 0.2
UPF1-204ENST00000596842 PFASO15067 1338 aa16.32■□□□□ 0.2
UPF1-204ENST00000596842 POC1B-GALNT4F8VUJ3 575 aa16.32■□□□□ 0.2
UPF1-204ENST00000596842 PIAS1O75925 651 aa16.32■□□□□ 0.2
UPF1-204ENST00000596842 AGTP01019 485 aa16.32■□□□□ 0.2
UPF1-204ENST00000596842 ANXA13P27216 316 aa16.32■□□□□ 0.2
UPF1-204ENST00000596842 KCNV2Q8TDN2 545 aa16.32■□□□□ 0.2
UPF1-204ENST00000596842 MIEF2Q96C03 454 aa16.32■□□□□ 0.2
UPF1-204ENST00000596842 ZNF317Q96PQ6 595 aaPredicted RBP16.32■□□□□ 0.2
UPF1-204ENST00000596842 FIZ1Q96SL8 496 aa16.32■□□□□ 0.2
UPF1-204ENST00000596842 ATXN2Q99700 1313 aaKnown RBP16.32■□□□□ 0.2
UPF1-204ENST00000596842 FAM167BQ9BTA0 163 aa16.32■□□□□ 0.2
UPF1-204ENST00000596842 GLIS2Q9BZE0 524 aaPredicted RBP16.32■□□□□ 0.2
UPF1-204ENST00000596842 NENFQ9UMX5 172 aa16.32■□□□□ 0.2
UPF1-204ENST00000596842 ECE2O60344 883 aa16.32■□□□□ 0.2
UPF1-204ENST00000596842 GJB6O95452 261 aa16.32■□□□□ 0.2
UPF1-204ENST00000596842 SLMAPQ14BN4 828 aa16.32■□□□□ 0.2
UPF1-204ENST00000596842 TMED2Q15363 201 aa16.32■□□□□ 0.2
UPF1-204ENST00000596842 PLEKHO2Q8TD55 490 aa16.32■□□□□ 0.2
UPF1-204ENST00000596842 MKL1Q969V6 931 aa16.32■□□□□ 0.2
UPF1-204ENST00000596842 PAGR1Q9BTK6 254 aa16.32■□□□□ 0.2
UPF1-204ENST00000596842 STMN4Q9H169 189 aaPredicted RBP16.32■□□□□ 0.2
UPF1-204ENST00000596842 DIS3Q9Y2L1 958 aaKnown RBP16.32■□□□□ 0.2
UPF1-204ENST00000596842 ATP6V1G2O95670 118 aa16.31■□□□□ 0.2
UPF1-204ENST00000596842 HARSP12081 509 aaKnown RBP16.31■□□□□ 0.2
UPF1-204ENST00000596842 ITGA8P53708 1063 aa16.31■□□□□ 0.2
UPF1-204ENST00000596842 PLCB4Q15147 1175 aa16.31■□□□□ 0.2
UPF1-204ENST00000596842 CDAN1Q8IWY9 1227 aa16.31■□□□□ 0.2
UPF1-204ENST00000596842 OLIG1Q8TAK6 271 aa16.31■□□□□ 0.2
UPF1-204ENST00000596842 SEMA4DQ92854 862 aa16.31■□□□□ 0.2
UPF1-204ENST00000596842 ACCSQ96QU6 501 aa16.31■□□□□ 0.2
UPF1-204ENST00000596842 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP16.31■□□□□ 0.2
UPF1-204ENST00000596842 CIITAP33076 1130 aa16.31■□□□□ 0.2
UPF1-204ENST00000596842 ZNF365Q70YC5 407 aa16.31■□□□□ 0.2
UPF1-204ENST00000596842 IL31RAQ8NI17 732 aa16.31■□□□□ 0.2
UPF1-204ENST00000596842 TAS1R2Q8TE23 839 aa16.31■□□□□ 0.2
UPF1-204ENST00000596842 KREMEN1Q96MU8 473 aa16.31■□□□□ 0.2
UPF1-204ENST00000596842 CCPG1Q9ULG6 757 aa16.31■□□□□ 0.2
UPF1-204ENST00000596842 TESPA1A2RU30 521 aaPredicted RBP16.31■□□□□ 0.2
UPF1-204ENST00000596842 PI4K2BG5E9Z4 385 aa16.31■□□□□ 0.2
UPF1-204ENST00000596842 IGF2BP3O00425 579 aaKnown RBP eCLIP16.31■□□□□ 0.2
UPF1-204ENST00000596842 ADRB2P07550 413 aa16.31■□□□□ 0.2
UPF1-204ENST00000596842 NUDT17P0C025 328 aa16.31■□□□□ 0.2
UPF1-204ENST00000596842 DGKZQ13574 1117 aa16.31■□□□□ 0.2
UPF1-204ENST00000596842 KIF22Q14807 665 aa16.31■□□□□ 0.2
UPF1-204ENST00000596842 CNGA2Q16280 664 aa16.31■□□□□ 0.2
UPF1-204ENST00000596842 FAM182AQ5T1J6 154 aa16.31■□□□□ 0.2
UPF1-204ENST00000596842 POMGNT1Q8WZA1 660 aa16.31■□□□□ 0.2
UPF1-204ENST00000596842 SLC5A5Q92911 643 aa16.31■□□□□ 0.2
UPF1-204ENST00000596842 PGM2Q96G03 612 aa16.31■□□□□ 0.2
UPF1-204ENST00000596842 ZDHHC15Q96MV8 337 aa16.31■□□□□ 0.2
UPF1-204ENST00000596842 KCNH7Q9NS40 1196 aa16.31■□□□□ 0.2
UPF1-204ENST00000596842 TMOD2Q9NZR1 351 aa16.31■□□□□ 0.2
UPF1-204ENST00000596842 ANAPC5Q9UJX4 755 aa16.31■□□□□ 0.2
UPF1-204ENST00000596842 DYNC1LI1Q9Y6G9 523 aaKnown RBP16.31■□□□□ 0.2
UPF1-204ENST00000596842 ZHX2Q9Y6X8 837 aa16.31■□□□□ 0.2
UPF1-204ENST00000596842 FRMPD4Q14CM0 1322 aa16.3■□□□□ 0.2
UPF1-204ENST00000596842 ATF2P15336 505 aa16.3■□□□□ 0.2
UPF1-204ENST00000596842 LDHDQ86WU2 507 aa16.3■□□□□ 0.2
UPF1-204ENST00000596842 SEC14L1Q92503 715 aa16.3■□□□□ 0.2
UPF1-204ENST00000596842 O00370 1275 aa16.3■□□□□ 0.2
UPF1-204ENST00000596842 RARGP13631 454 aa16.3■□□□□ 0.2
UPF1-204ENST00000596842 CD58P19256 250 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms