RNA–Protein interactions for RNA: ENST00000596457.1

LIG1-211, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 792 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-211ENST00000596457 PAGE5Q96GU1 130 aa12.14□□□□□ -0.47
LIG1-211ENST00000596457 C7orf25Q9BPX7 421 aa12.14□□□□□ -0.47
LIG1-211ENST00000596457 CCDC94Q9BW85 323 aaPredicted RBP12.14□□□□□ -0.47
LIG1-211ENST00000596457 PLVAPQ9BX97 442 aa12.14□□□□□ -0.47
LIG1-211ENST00000596457 TRIM9Q9C026 710 aa12.14□□□□□ -0.47
LIG1-211ENST00000596457 CDT1Q9H211 546 aa12.14□□□□□ -0.47
LIG1-211ENST00000596457 MAGEF1Q9HAY2 307 aa12.14□□□□□ -0.47
LIG1-211ENST00000596457 KANSL3Q9P2N6 904 aa12.14□□□□□ -0.47
LIG1-211ENST00000596457 SEL1LQ9UBV2 794 aa12.14□□□□□ -0.47
LIG1-211ENST00000596457 DNAJB4Q9UDY4 337 aa12.14□□□□□ -0.47
LIG1-211ENST00000596457 COG5Q9UP83 839 aa12.14□□□□□ -0.47
LIG1-211ENST00000596457 PLAGL2Q9UPG8 496 aa12.14□□□□□ -0.47
LIG1-211ENST00000596457 HPSEQ9Y251 543 aa12.14□□□□□ -0.47
LIG1-211ENST00000596457 ANKRD63C9JTQ0 380 aa12.13□□□□□ -0.47
LIG1-211ENST00000596457 HNRNPDLO14979 420 aaKnown RBP12.13□□□□□ -0.47
LIG1-211ENST00000596457 CLDN3O15551 220 aa12.13□□□□□ -0.47
LIG1-211ENST00000596457 TOM1L1O75674 476 aa12.13□□□□□ -0.47
LIG1-211ENST00000596457 FGF18O76093 207 aa12.13□□□□□ -0.47
LIG1-211ENST00000596457 RECQL4O94761 1208 aa12.13□□□□□ -0.47
LIG1-211ENST00000596457 PRPF6O94906 941 aaKnown RBP12.13□□□□□ -0.47
LIG1-211ENST00000596457 ZNF202O95125 648 aa12.13□□□□□ -0.47
LIG1-211ENST00000596457 MCF2P10911 925 aa12.13□□□□□ -0.47
LIG1-211ENST00000596457 OR1G1P47890 313 aa12.13□□□□□ -0.47
LIG1-211ENST00000596457 YARSP54577 528 aaKnown RBP12.13□□□□□ -0.47
LIG1-211ENST00000596457 GTF2BQ00403 316 aa12.13□□□□□ -0.47
LIG1-211ENST00000596457 NOLC1Q14978 699 aaKnown RBP eCLIP12.13□□□□□ -0.47
LIG1-211ENST00000596457 SYCP3Q8IZU3 236 aa12.13□□□□□ -0.47
LIG1-211ENST00000596457 SPPL3Q8TCT6 385 aa12.13□□□□□ -0.47
LIG1-211ENST00000596457 MICAL1Q8TDZ2 1067 aa12.13□□□□□ -0.47
LIG1-211ENST00000596457 NOC3LQ8WTT2 800 aaKnown RBP12.13□□□□□ -0.47
LIG1-211ENST00000596457 POF1BQ8WVV4 589 aa12.13□□□□□ -0.47
LIG1-211ENST00000596457 RABGGTAQ92696 567 aa12.13□□□□□ -0.47
LIG1-211ENST00000596457 P2RX5Q93086 422 aa12.13□□□□□ -0.47
LIG1-211ENST00000596457 ASB2Q96Q27 587 aa12.13□□□□□ -0.47
LIG1-211ENST00000596457 ACCSQ96QU6 501 aa12.13□□□□□ -0.47
LIG1-211ENST00000596457 FIZ1Q96SL8 496 aa12.13□□□□□ -0.47
LIG1-211ENST00000596457 C1QTNF1Q9BXJ1 281 aa12.13□□□□□ -0.47
LIG1-211ENST00000596457 FGFBP2Q9BYJ0 223 aa12.13□□□□□ -0.47
LIG1-211ENST00000596457 CXCL16Q9H2A7 254 aa12.13□□□□□ -0.47
LIG1-211ENST00000596457 IKZF4Q9H2S9 585 aa12.13□□□□□ -0.47
LIG1-211ENST00000596457 PTPRHQ9HD43 1115 aa12.13□□□□□ -0.47
LIG1-211ENST00000596457 SPG21Q9NZD8 308 aa12.13□□□□□ -0.47
LIG1-211ENST00000596457 USP25Q9UHP3 1055 aa12.13□□□□□ -0.47
LIG1-211ENST00000596457 FAN1Q9Y2M0 1017 aa12.13□□□□□ -0.47
LIG1-211ENST00000596457 PCDHB13Q9Y5F0 798 aa12.13□□□□□ -0.47
LIG1-211ENST00000596457 ATG2AQ2TAZ0 1938 aa12.13□□□□□ -0.47
LIG1-211ENST00000596457 TISP43B9A030 160 aa12.12□□□□□ -0.47
LIG1-211ENST00000596457 B4GALT3O60512 393 aa12.12□□□□□ -0.47
LIG1-211ENST00000596457 ALDH2P05091 517 aa12.12□□□□□ -0.47
LIG1-211ENST00000596457 GALTP07902 379 aa12.12□□□□□ -0.47
LIG1-211ENST00000596457 GRM5P41594 1212 aa12.12□□□□□ -0.47
LIG1-211ENST00000596457 SLC11A1P49279 550 aa12.12□□□□□ -0.47
LIG1-211ENST00000596457 CASP5P51878 434 aa12.12□□□□□ -0.47
LIG1-211ENST00000596457 KRT17Q04695 432 aa12.12□□□□□ -0.47
LIG1-211ENST00000596457 KCNA1Q09470 495 aa12.12□□□□□ -0.47
LIG1-211ENST00000596457 CSPP1Q1MSJ5 1256 aa12.12□□□□□ -0.47
LIG1-211ENST00000596457 GLRA4Q5JXX5 417 aa12.12□□□□□ -0.47
LIG1-211ENST00000596457 L1TD1Q5T7N2 865 aaKnown RBP12.12□□□□□ -0.47
LIG1-211ENST00000596457 ZPBP2Q6X784 338 aa12.12□□□□□ -0.47
LIG1-211ENST00000596457 UNC13DQ70J99 1090 aa12.12□□□□□ -0.47
LIG1-211ENST00000596457 ADAMTS19Q8TE59 1207 aa12.12□□□□□ -0.47
LIG1-211ENST00000596457 FAM212AQ96EL1 285 aa12.12□□□□□ -0.47
LIG1-211ENST00000596457 ACAP3Q96P50 834 aa12.12□□□□□ -0.47
LIG1-211ENST00000596457 IPO9Q96P70 1041 aaKnown RBP12.12□□□□□ -0.47
LIG1-211ENST00000596457 MSTO1Q9BUK6 570 aa12.12□□□□□ -0.47
LIG1-211ENST00000596457 HAPLN2Q9GZV7 340 aa12.12□□□□□ -0.47
LIG1-211ENST00000596457 CACNG4Q9UBN1 327 aa12.12□□□□□ -0.47
LIG1-211ENST00000596457 EXOC7Q9UPT5 735 aa12.12□□□□□ -0.47
LIG1-211ENST00000596457 PRG3Q9Y2Y8 225 aaPredicted RBP12.12□□□□□ -0.47
LIG1-211ENST00000596457 CDH23Q9H251 3354 aa12.12□□□□□ -0.47
LIG1-211ENST00000596457 MUC6Q6W4X9 2439 aa12.12□□□□□ -0.47
LIG1-211ENST00000596457 CITO14578 2027 aa12.11□□□□□ -0.47
LIG1-211ENST00000596457 FRMD3A2A2Y4 597 aa12.11□□□□□ -0.47
LIG1-211ENST00000596457 ABLIM1O14639 778 aa12.11□□□□□ -0.47
LIG1-211ENST00000596457 NRP1O14786 923 aa12.11□□□□□ -0.47
LIG1-211ENST00000596457 GADD45BO75293 160 aaPredicted RBP12.11□□□□□ -0.47
LIG1-211ENST00000596457 NR1I2O75469 434 aa12.11□□□□□ -0.47
LIG1-211ENST00000596457 THP07101 528 aa12.11□□□□□ -0.47
LIG1-211ENST00000596457 PRR29P0C7W0 189 aa12.11□□□□□ -0.47
LIG1-211ENST00000596457 SCP2P22307 547 aa12.11□□□□□ -0.47
LIG1-211ENST00000596457 PROZP22891 400 aa12.11□□□□□ -0.47
LIG1-211ENST00000596457 DNAJB1P25685 340 aa12.11□□□□□ -0.47
LIG1-211ENST00000596457 ABCD1P33897 745 aa12.11□□□□□ -0.47
LIG1-211ENST00000596457 FAM26FQ5R3K3 315 aa12.11□□□□□ -0.47
LIG1-211ENST00000596457 SLC39A4Q6P5W5 647 aa12.11□□□□□ -0.47
LIG1-211ENST00000596457 KRBA2Q6ZNG9 492 aa12.11□□□□□ -0.47
LIG1-211ENST00000596457 EP400NLQ6ZTU2 488 aa12.11□□□□□ -0.47
LIG1-211ENST00000596457 STXBP4Q6ZWJ1 553 aa12.11□□□□□ -0.47
LIG1-211ENST00000596457 MAP4K3Q8IVH8 894 aa12.11□□□□□ -0.47
LIG1-211ENST00000596457 SLC39A11Q8N1S5 342 aa12.11□□□□□ -0.47
LIG1-211ENST00000596457 GLIS3Q8NEA6 775 aa12.11□□□□□ -0.47
LIG1-211ENST00000596457 HVCN1Q96D96 273 aa12.11□□□□□ -0.47
LIG1-211ENST00000596457 MRPL38Q96DV4 380 aaKnown RBP12.11□□□□□ -0.47
LIG1-211ENST00000596457 TMEM169Q96HH4 297 aa12.11□□□□□ -0.47
LIG1-211ENST00000596457 UHRF1Q96T88 793 aaPredicted RBP12.11□□□□□ -0.47
LIG1-211ENST00000596457 ST6GALNAC4Q9H4F1 302 aa12.11□□□□□ -0.47
LIG1-211ENST00000596457 IGFLR1Q9H665 355 aa12.11□□□□□ -0.47
LIG1-211ENST00000596457 SLC39A2Q9NP94 309 aa12.11□□□□□ -0.47
LIG1-211ENST00000596457 OLFML3Q9NRN5 406 aa12.11□□□□□ -0.47
LIG1-211ENST00000596457 EXOC1Q9NV70 894 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms