RNA–Protein interactions for RNA: ENST00000593564.2

LSM4-202, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 656 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-202ENST00000593564 HSP90AA2PQ14568 343 aaPredicted RBP26.44■■□□□ 1.82
LSM4-202ENST00000593564 CWF19L1Q69YN2 538 aaKnown RBP26.44■■□□□ 1.82
LSM4-202ENST00000593564 LILRA6Q6PI73 481 aa26.44■■□□□ 1.82
LSM4-202ENST00000593564 PADI6Q6TGC4 694 aa26.44■■□□□ 1.82
LSM4-202ENST00000593564 SPATA31D4Q6ZUB0 917 aa26.44■■□□□ 1.82
LSM4-202ENST00000593564 BSNDQ8WZ55 320 aa26.44■■□□□ 1.82
LSM4-202ENST00000593564 RABGGTAQ92696 567 aa26.44■■□□□ 1.82
LSM4-202ENST00000593564 C8orf76Q96K31 380 aa26.44■■□□□ 1.82
LSM4-202ENST00000593564 FOXP1Q9H334 677 aaPredicted RBP26.44■■□□□ 1.82
LSM4-202ENST00000593564 EPS15L1Q9UBC2 864 aa26.44■■□□□ 1.82
LSM4-202ENST00000593564 ARHGEF35A5YM69 484 aa26.43■■□□□ 1.82
LSM4-202ENST00000593564 TTLL13PA6NNM8 815 aa26.43■■□□□ 1.82
LSM4-202ENST00000593564 PROB1E7EW31 1015 aa26.43■■□□□ 1.82
LSM4-202ENST00000593564 GBP2P32456 591 aaPredicted RBP26.43■■□□□ 1.82
LSM4-202ENST00000593564 PRPF4BQ13523 1007 aaKnown RBP26.43■■□□□ 1.82
LSM4-202ENST00000593564 MAPK6Q16659 721 aa26.43■■□□□ 1.82
LSM4-202ENST00000593564 FLCNQ8NFG4 579 aa26.43■■□□□ 1.82
LSM4-202ENST00000593564 NT5C3AQ9H0P0 336 aa26.43■■□□□ 1.82
LSM4-202ENST00000593564 CACNG4Q9UBN1 327 aa26.43■■□□□ 1.82
LSM4-202ENST00000593564 LIMCH1Q9UPQ0 1083 aa26.43■■□□□ 1.82
LSM4-202ENST00000593564 MYO15AQ9UKN7 3530 aa26.43■■□□□ 1.82
LSM4-202ENST00000593564 RPL17P18621 184 aaKnown RBP26.42■■□□□ 1.82
LSM4-202ENST00000593564 MUTP22033 750 aa26.42■■□□□ 1.82
LSM4-202ENST00000593564 NAMPTP43490 491 aa26.42■■□□□ 1.82
LSM4-202ENST00000593564 ZNF174Q15697 407 aa26.42■■□□□ 1.82
LSM4-202ENST00000593564 MYADMQ96S97 322 aa26.42■■□□□ 1.82
LSM4-202ENST00000593564 PAAF1Q9BRP4 392 aa26.42■■□□□ 1.82
LSM4-202ENST00000593564 LLPHQ9BRT6 129 aaKnown RBP26.42■■□□□ 1.82
LSM4-202ENST00000593564 CCDC113Q9H0I3 377 aa26.42■■□□□ 1.82
LSM4-202ENST00000593564 SNTG2Q9NY99 539 aa26.42■■□□□ 1.82
LSM4-202ENST00000593564 FBXL21Q9UKT6 434 aa26.42■■□□□ 1.82
LSM4-202ENST00000593564 ACKR2O00590 384 aa26.41■■□□□ 1.82
LSM4-202ENST00000593564 PTGESO14684 152 aa26.41■■□□□ 1.82
LSM4-202ENST00000593564 PRKCBP05771 671 aa26.41■■□□□ 1.82
LSM4-202ENST00000593564 NPR3P17342 541 aa26.41■■□□□ 1.82
LSM4-202ENST00000593564 AOC1P19801 751 aa26.41■■□□□ 1.82
LSM4-202ENST00000593564 TMEM132AQ24JP5 1023 aa26.41■■□□□ 1.82
LSM4-202ENST00000593564 RTP2Q5QGT7 225 aa26.41■■□□□ 1.82
LSM4-202ENST00000593564 ERICH6BQ5W0A0 696 aa26.41■■□□□ 1.82
LSM4-202ENST00000593564 GLYCTKQ8IVS8 523 aa26.41■■□□□ 1.82
LSM4-202ENST00000593564 CCDC83Q8IWF9 413 aa26.41■■□□□ 1.82
LSM4-202ENST00000593564 NXPE3Q969Y0 559 aa26.41■■□□□ 1.82
LSM4-202ENST00000593564 ADPGKQ9BRR6 497 aa26.41■■□□□ 1.82
LSM4-202ENST00000593564 PRKD2Q9BZL6 878 aa26.41■■□□□ 1.82
LSM4-202ENST00000593564 PIDD1Q9HB75 910 aa26.41■■□□□ 1.82
LSM4-202ENST00000593564 CASTOR2A6NHX0 329 aa26.4■■□□□ 1.82
LSM4-202ENST00000593564 RECQL4O94761 1208 aa26.4■■□□□ 1.82
LSM4-202ENST00000593564 KIF4AO95239 1232 aa26.4■■□□□ 1.82
LSM4-202ENST00000593564 THP07101 528 aa26.4■■□□□ 1.82
LSM4-202ENST00000593564 PPP2R5AQ15172 486 aa26.4■■□□□ 1.82
LSM4-202ENST00000593564 HAUS3Q68CZ6 603 aa26.4■■□□□ 1.82
LSM4-202ENST00000593564 SIX5Q8N196 739 aa26.4■■□□□ 1.82
LSM4-202ENST00000593564 DEPTORQ8TB45 409 aa26.4■■□□□ 1.82
LSM4-202ENST00000593564 TTPALQ9BTX7 342 aa26.4■■□□□ 1.82
LSM4-202ENST00000593564 DAXXQ9UER7 740 aaPredicted RBP26.4■■□□□ 1.82
LSM4-202ENST00000593564 CFAP54Q96N23 3096 aa26.39■■□□□ 1.82
LSM4-202ENST00000593564 NARSO43776 548 aaKnown RBP26.39■■□□□ 1.82
LSM4-202ENST00000593564 SEC24BO95487 1268 aa26.39■■□□□ 1.82
LSM4-202ENST00000593564 NBL1P41271 181 aa26.39■■□□□ 1.82
LSM4-202ENST00000593564 NAB2Q15742 525 aa26.39■■□□□ 1.82
LSM4-202ENST00000593564 TTC38Q5R3I4 469 aa26.39■■□□□ 1.82
LSM4-202ENST00000593564 PRSS55Q6UWB4 352 aaPredicted RBP26.39■■□□□ 1.82
LSM4-202ENST00000593564 NOSTRINQ8IVI9 506 aa26.39■■□□□ 1.82
LSM4-202ENST00000593564 FBXO18Q8NFZ0 1043 aa26.39■■□□□ 1.82
LSM4-202ENST00000593564 RSAD2Q8WXG1 361 aa26.39■■□□□ 1.82
LSM4-202ENST00000593564 PIK3R5Q8WYR1 880 aa26.39■■□□□ 1.82
LSM4-202ENST00000593564 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP26.39■■□□□ 1.82
LSM4-202ENST00000593564 WNT16Q9UBV4 365 aa26.39■■□□□ 1.82
LSM4-202ENST00000593564 MTCL1Q9Y4B5 1905 aaKnown RBP26.38■■□□□ 1.81
LSM4-202ENST00000593564 ZMYND10O75800 440 aa26.38■■□□□ 1.81
LSM4-202ENST00000593564 EDN1P05305 212 aa26.38■■□□□ 1.81
LSM4-202ENST00000593564 TRAPPC10P48553 1259 aa26.38■■□□□ 1.81
LSM4-202ENST00000593564 RBM25P49756 843 aaKnown RBP26.38■■□□□ 1.81
LSM4-202ENST00000593564 FAM171A1Q5VUB5 890 aa26.38■■□□□ 1.81
LSM4-202ENST00000593564 HASPINQ8TF76 798 aa26.38■■□□□ 1.81
LSM4-202ENST00000593564 RTP3Q9BQQ7 232 aa26.38■■□□□ 1.81
LSM4-202ENST00000593564 FBXW11Q9UKB1 542 aa26.38■■□□□ 1.81
LSM4-202ENST00000593564 USP20Q9Y2K6 914 aa26.38■■□□□ 1.81
LSM4-202ENST00000593564 DOCK8Q8NF50 2099 aa26.37■■□□□ 1.81
LSM4-202ENST00000593564 PI15O43692 258 aa26.37■■□□□ 1.81
LSM4-202ENST00000593564 LIG1P18858 919 aa26.37■■□□□ 1.81
LSM4-202ENST00000593564 FXR2P51116 673 aaKnown RBP eCLIP26.37■■□□□ 1.81
LSM4-202ENST00000593564 EFNA5P52803 228 aa26.37■■□□□ 1.81
LSM4-202ENST00000593564 HMGN5P82970 282 aaKnown RBP26.37■■□□□ 1.81
LSM4-202ENST00000593564 ELAVL2Q12926 359 aaKnown RBP26.37■■□□□ 1.81
LSM4-202ENST00000593564 DCAF4L1Q3SXM0 396 aa26.37■■□□□ 1.81
LSM4-202ENST00000593564 EEF1DP3Q658K8 133 aa26.37■■□□□ 1.81
LSM4-202ENST00000593564 SLC44A3Q8N4M1 653 aa26.37■■□□□ 1.81
LSM4-202ENST00000593564 LNX1Q8TBB1 728 aaPredicted RBP26.37■■□□□ 1.81
LSM4-202ENST00000593564 IFT74Q96LB3 600 aa26.37■■□□□ 1.81
LSM4-202ENST00000593564 CLSTN3Q9BQT9 956 aa26.37■■□□□ 1.81
LSM4-202ENST00000593564 CXCL16Q9H2A7 254 aa26.37■■□□□ 1.81
LSM4-202ENST00000593564 PTPRZ1P23471 2315 aaPredicted RBP26.37■■□□□ 1.81
LSM4-202ENST00000593564 LAMP2P13473 410 aa26.36■■□□□ 1.81
LSM4-202ENST00000593564 PSMD5Q16401 504 aa26.36■■□□□ 1.81
LSM4-202ENST00000593564 ECM1Q16610 540 aa26.36■■□□□ 1.81
LSM4-202ENST00000593564 GET4Q7L5D6 327 aaPredicted RBP26.36■■□□□ 1.81
LSM4-202ENST00000593564 CCDC105Q8IYK2 499 aa26.36■■□□□ 1.81
LSM4-202ENST00000593564 C4orf32Q8N8J7 132 aa26.36■■□□□ 1.81
LSM4-202ENST00000593564 KIFAP3Q92845 792 aa26.36■■□□□ 1.81
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms