RNA–Protein interactions for RNA: ENST00000589753.1

ATG4D-211, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4D, Length 931 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-211ENST00000589753 FBXL18Q96ME1 805 aa16.54■□□□□ 0.24
ATG4D-211ENST00000589753 CEP63Q96MT8 703 aa16.54■□□□□ 0.24
ATG4D-211ENST00000589753 BUD13Q9BRD0 619 aaKnown RBP eCLIP16.54■□□□□ 0.24
ATG4D-211ENST00000589753 APOL6Q9BWW8 343 aa16.54■□□□□ 0.24
ATG4D-211ENST00000589753 SRRTQ9BXP5 876 aaKnown RBP16.54■□□□□ 0.24
ATG4D-211ENST00000589753 RNF216Q9NWF9 866 aaPredicted RBP16.54■□□□□ 0.24
ATG4D-211ENST00000589753 SNTG2Q9NY99 539 aa16.54■□□□□ 0.24
ATG4D-211ENST00000589753 CPSF3Q9UKF6 684 aaKnown RBP16.54■□□□□ 0.24
ATG4D-211ENST00000589753 FRMD4BQ9Y2L6 1034 aa16.54■□□□□ 0.24
ATG4D-211ENST00000589753 SMTNL1A8MU46 457 aa16.53■□□□□ 0.24
ATG4D-211ENST00000589753 IKBKBO14920 756 aa16.53■□□□□ 0.24
ATG4D-211ENST00000589753 EOMESO95936 686 aa16.53■□□□□ 0.24
ATG4D-211ENST00000589753 CLTAP09496 248 aa16.53■□□□□ 0.24
ATG4D-211ENST00000589753 ITGA4P13612 1032 aa16.53■□□□□ 0.24
ATG4D-211ENST00000589753 PSMC2P35998 433 aaKnown RBP16.53■□□□□ 0.24
ATG4D-211ENST00000589753 CASP4P49662 377 aa16.53■□□□□ 0.24
ATG4D-211ENST00000589753 YARSP54577 528 aaKnown RBP16.53■□□□□ 0.24
ATG4D-211ENST00000589753 SNRNP35Q16560 246 aaKnown RBP16.53■□□□□ 0.24
ATG4D-211ENST00000589753 CRELD2Q6UXH1 353 aaPredicted RBP16.53■□□□□ 0.24
ATG4D-211ENST00000589753 LIN28BQ6ZN17 250 aaKnown RBP eCLIP16.53■□□□□ 0.24
ATG4D-211ENST00000589753 FILIP1Q7Z7B0 1213 aa16.53■□□□□ 0.24
ATG4D-211ENST00000589753 CBWD2Q8IUF1 395 aa16.53■□□□□ 0.24
ATG4D-211ENST00000589753 DHX40Q8IX18 779 aaKnown RBP16.53■□□□□ 0.24
ATG4D-211ENST00000589753 TMEM192Q8IY95 271 aa16.53■□□□□ 0.24
ATG4D-211ENST00000589753 RDH13Q8NBN7 331 aa16.53■□□□□ 0.24
ATG4D-211ENST00000589753 RNF169Q8NCN4 708 aa16.53■□□□□ 0.24
ATG4D-211ENST00000589753 FAM200AQ8TCP9 573 aa16.53■□□□□ 0.24
ATG4D-211ENST00000589753 ACAP3Q96P50 834 aa16.53■□□□□ 0.24
ATG4D-211ENST00000589753 MKNK1Q9BUB5 465 aa16.53■□□□□ 0.24
ATG4D-211ENST00000589753 RNF39Q9H2S5 420 aa16.53■□□□□ 0.24
ATG4D-211ENST00000589753 ELAC1Q9H777 363 aaKnown RBP16.53■□□□□ 0.24
ATG4D-211ENST00000589753 CBX8Q9HC52 389 aa16.53■□□□□ 0.24
ATG4D-211ENST00000589753 TMEM161AQ9NX61 479 aa16.53■□□□□ 0.24
ATG4D-211ENST00000589753 PARP2Q9UGN5 583 aa16.53■□□□□ 0.24
ATG4D-211ENST00000589753 NFE2L3Q9Y4A8 694 aa16.53■□□□□ 0.24
ATG4D-211ENST00000589753 PCDHB7Q9Y5E2 793 aa16.53■□□□□ 0.24
ATG4D-211ENST00000589753 MICAL3Q7RTP6 2002 aa16.52■□□□□ 0.24
ATG4D-211ENST00000589753 ZNF233A6NK53 670 aa16.52■□□□□ 0.24
ATG4D-211ENST00000589753 ZBBXA8MT70 800 aa16.52■□□□□ 0.24
ATG4D-211ENST00000589753 BECN2A8MW95 431 aa16.52■□□□□ 0.24
ATG4D-211ENST00000589753 H0YGN5 161 aa16.52■□□□□ 0.24
ATG4D-211ENST00000589753 MAPK13O15264 365 aa16.52■□□□□ 0.24
ATG4D-211ENST00000589753 SLC16A3O15427 465 aaKnown RBP16.52■□□□□ 0.24
ATG4D-211ENST00000589753 AKAP3O75969 853 aa16.52■□□□□ 0.24
ATG4D-211ENST00000589753 AMHP03971 560 aa16.52■□□□□ 0.24
ATG4D-211ENST00000589753 EPB41P11171 864 aaKnown RBP16.52■□□□□ 0.24
ATG4D-211ENST00000589753 ATF7P17544 494 aaPredicted RBP16.52■□□□□ 0.24
ATG4D-211ENST00000589753 AKAP5P24588 427 aa16.52■□□□□ 0.24
ATG4D-211ENST00000589753 KCNJ6P48051 423 aa16.52■□□□□ 0.24
ATG4D-211ENST00000589753 WDR5P61964 334 aaKnown RBP16.52■□□□□ 0.24
ATG4D-211ENST00000589753 POU5F1Q01860 360 aaKnown RBP16.52■□□□□ 0.24
ATG4D-211ENST00000589753 IQCB1Q15051 598 aa16.52■□□□□ 0.24
ATG4D-211ENST00000589753 ZNF598Q86UK7 904 aaKnown RBP16.52■□□□□ 0.24
ATG4D-211ENST00000589753 LPPQ93052 612 aa16.52■□□□□ 0.24
ATG4D-211ENST00000589753 THAP9Q9H5L6 903 aa16.52■□□□□ 0.24
ATG4D-211ENST00000589753 RPF1Q9H9Y2 349 aaKnown RBP16.52■□□□□ 0.24
ATG4D-211ENST00000589753 TOPORSQ9NS56 1045 aaPredicted RBP16.52■□□□□ 0.24
ATG4D-211ENST00000589753 LRFN2Q9ULH4 789 aa16.52■□□□□ 0.24
ATG4D-211ENST00000589753 RECQL4O94761 1208 aa16.51■□□□□ 0.23
ATG4D-211ENST00000589753 ADRB2P07550 413 aa16.51■□□□□ 0.23
ATG4D-211ENST00000589753 CXCL8P10145 99 aa16.51■□□□□ 0.23
ATG4D-211ENST00000589753 NCAPHQ15003 741 aa16.51■□□□□ 0.23
ATG4D-211ENST00000589753 ENOX2Q16206 610 aaKnown RBP16.51■□□□□ 0.23
ATG4D-211ENST00000589753 AGMOQ6ZNB7 445 aa16.51■□□□□ 0.23
ATG4D-211ENST00000589753 NPAS4Q8IUM7 802 aa16.51■□□□□ 0.23
ATG4D-211ENST00000589753 BRSK2Q8IWQ3 736 aa16.51■□□□□ 0.23
ATG4D-211ENST00000589753 FAM186BQ8IYM0 893 aa16.51■□□□□ 0.23
ATG4D-211ENST00000589753 HERVK_113Q902F9 699 aa16.51■□□□□ 0.23
ATG4D-211ENST00000589753 MTIF3Q9H2K0 278 aaKnown RBP16.51■□□□□ 0.23
ATG4D-211ENST00000589753 UBN1Q9NPG3 1134 aa16.51■□□□□ 0.23
ATG4D-211ENST00000589753 RBAKQ9NYW8 714 aaPredicted RBP16.51■□□□□ 0.23
ATG4D-211ENST00000589753 GIT1Q9Y2X7 761 aa16.51■□□□□ 0.23
ATG4D-211ENST00000589753 MEIS3P2A8K0S8 358 aa16.5■□□□□ 0.23
ATG4D-211ENST00000589753 GNA14O95837 355 aa16.5■□□□□ 0.23
ATG4D-211ENST00000589753 DEFB103AP81534 67 aa16.5■□□□□ 0.23
ATG4D-211ENST00000589753 PPP2R3AQ06190 1150 aa16.5■□□□□ 0.23
ATG4D-211ENST00000589753 CYP24A1Q07973 514 aa16.5■□□□□ 0.23
ATG4D-211ENST00000589753 SLC10A6Q3KNW5 377 aa16.5■□□□□ 0.23
ATG4D-211ENST00000589753 CCDC40Q4G0X9 1142 aa16.5■□□□□ 0.23
ATG4D-211ENST00000589753 LUZP1Q86V48 1076 aa16.5■□□□□ 0.23
ATG4D-211ENST00000589753 FAM114A1Q8IWE2 563 aa16.5■□□□□ 0.23
ATG4D-211ENST00000589753 CRIPAKQ8N1N5 446 aa16.5■□□□□ 0.23
ATG4D-211ENST00000589753 TOP1MTQ969P6 601 aa16.5■□□□□ 0.23
ATG4D-211ENST00000589753 FAM212AQ96EL1 285 aa16.5■□□□□ 0.23
ATG4D-211ENST00000589753 MFSD14AQ96MC6 490 aa16.5■□□□□ 0.23
ATG4D-211ENST00000589753 RSAD1Q9HA92 442 aa16.5■□□□□ 0.23
ATG4D-211ENST00000589753 PLEKHA5Q9HAU0 1116 aa16.5■□□□□ 0.23
ATG4D-211ENST00000589753 SAMSN1Q9NSI8 373 aaKnown RBP16.5■□□□□ 0.23
ATG4D-211ENST00000589753 FANCLQ9NW38 375 aa16.5■□□□□ 0.23
ATG4D-211ENST00000589753 KLK14Q9P0G3 267 aa16.5■□□□□ 0.23
ATG4D-211ENST00000589753 TTC26A0AVF1 554 aa16.49■□□□□ 0.23
ATG4D-211ENST00000589753 TULP1O00294 542 aaPredicted RBP16.49■□□□□ 0.23
ATG4D-211ENST00000589753 HOXA2O43364 376 aa16.49■□□□□ 0.23
ATG4D-211ENST00000589753 UPP2O95045 317 aa16.49■□□□□ 0.23
ATG4D-211ENST00000589753 IL18RAPO95256 599 aa16.49■□□□□ 0.23
ATG4D-211ENST00000589753 KRT13P13646 458 aa16.49■□□□□ 0.23
ATG4D-211ENST00000589753 MLLT1Q03111 559 aaPredicted RBP16.49■□□□□ 0.23
ATG4D-211ENST00000589753 SURF1Q15526 300 aa16.49■□□□□ 0.23
ATG4D-211ENST00000589753 HSP90AA4PQ58FG1 418 aa16.49■□□□□ 0.23
ATG4D-211ENST00000589753 INTS8Q75QN2 995 aaKnown RBP16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms