RNA–Protein interactions for RNA: ENST00000586457.1

CLIP3-203, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 1 (best)

Gene CLIP3, Length 433 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-203ENST00000586457 SSTR3P32745 418 aaPredicted RBP11.92□□□□□ -0.5
CLIP3-203ENST00000586457 GTF2F1P35269 517 aaKnown RBP eCLIP11.92□□□□□ -0.5
CLIP3-203ENST00000586457 AFF1P51825 1210 aaKnown RBP11.92□□□□□ -0.5
CLIP3-203ENST00000586457 TUSC3Q13454 348 aa11.92□□□□□ -0.5
CLIP3-203ENST00000586457 KYAT1Q16773 422 aa11.92□□□□□ -0.5
CLIP3-203ENST00000586457 DUSP6Q16828 381 aa11.92□□□□□ -0.5
CLIP3-203ENST00000586457 EEF1DP3Q658K8 133 aa11.92□□□□□ -0.5
CLIP3-203ENST00000586457 ZPBP2Q6X784 338 aa11.92□□□□□ -0.5
CLIP3-203ENST00000586457 USP49Q70CQ1 688 aa11.92□□□□□ -0.5
CLIP3-203ENST00000586457 ADGRD2Q7Z7M1 963 aa11.92□□□□□ -0.5
CLIP3-203ENST00000586457 PPFIBP1Q86W92 1011 aa11.92□□□□□ -0.5
CLIP3-203ENST00000586457 COLGALT2Q8IYK4 626 aa11.92□□□□□ -0.5
CLIP3-203ENST00000586457 IQUBQ8NA54 791 aa11.92□□□□□ -0.5
CLIP3-203ENST00000586457 TMEM161BQ8NDZ6 487 aa11.92□□□□□ -0.5
CLIP3-203ENST00000586457 PYM1Q9BRP8 204 aaKnown RBP11.92□□□□□ -0.5
CLIP3-203ENST00000586457 MRPL44Q9H9J2 332 aaKnown RBP11.92□□□□□ -0.5
CLIP3-203ENST00000586457 BLOC1S4Q9NUP1 217 aa11.92□□□□□ -0.5
CLIP3-203ENST00000586457 SLC38A7Q9NVC3 462 aa11.92□□□□□ -0.5
CLIP3-203ENST00000586457 PCDHGC5Q9Y5F6 944 aa11.92□□□□□ -0.5
CLIP3-203ENST00000586457 MORC2Q9Y6X9 1032 aaPredicted RBP11.92□□□□□ -0.5
CLIP3-203ENST00000586457 ZMYM2Q9UBW7 1377 aa11.92□□□□□ -0.5
CLIP3-203ENST00000586457 C2orf71A6NGG8 1288 aa11.91□□□□□ -0.5
CLIP3-203ENST00000586457 TTLL13PA6NNM8 815 aa11.91□□□□□ -0.5
CLIP3-203ENST00000586457 HIDE1A8MVS5 230 aa11.91□□□□□ -0.5
CLIP3-203ENST00000586457 C2CD2LO14523 706 aa11.91□□□□□ -0.5
CLIP3-203ENST00000586457 FSCN2O14926 492 aa11.91□□□□□ -0.5
CLIP3-203ENST00000586457 LINC01565O15544 149 aa11.91□□□□□ -0.5
CLIP3-203ENST00000586457 TRAPPC3O43617 180 aa11.91□□□□□ -0.5
CLIP3-203ENST00000586457 CTSAP10619 480 aa11.91□□□□□ -0.5
CLIP3-203ENST00000586457 GAP43P17677 238 aa11.91□□□□□ -0.5
CLIP3-203ENST00000586457 GRM5P41594 1212 aa11.91□□□□□ -0.5
CLIP3-203ENST00000586457 KRT85P78386 507 aa11.91□□□□□ -0.5
CLIP3-203ENST00000586457 MAPK7Q13164 816 aa11.91□□□□□ -0.5
CLIP3-203ENST00000586457 HSP90AA2PQ14568 343 aaPredicted RBP11.91□□□□□ -0.5
CLIP3-203ENST00000586457 NOLC1Q14978 699 aaKnown RBP eCLIP11.91□□□□□ -0.5
CLIP3-203ENST00000586457 TPRNQ4KMQ1 711 aa11.91□□□□□ -0.5
CLIP3-203ENST00000586457 HERC4Q5GLZ8 1057 aaPredicted RBP11.91□□□□□ -0.5
CLIP3-203ENST00000586457 CES5AQ6NT32 575 aa11.91□□□□□ -0.5
CLIP3-203ENST00000586457 STXBP4Q6ZWJ1 553 aa11.91□□□□□ -0.5
CLIP3-203ENST00000586457 CCDC65Q8IXS2 484 aa11.91□□□□□ -0.5
CLIP3-203ENST00000586457 DDX12PQ92771 950 aa11.91□□□□□ -0.5
CLIP3-203ENST00000586457 CASP10Q92851 521 aa11.91□□□□□ -0.5
CLIP3-203ENST00000586457 CUEDC2Q9H467 287 aa11.91□□□□□ -0.5
CLIP3-203ENST00000586457 MIOSQ9NXC5 875 aa11.91□□□□□ -0.5
CLIP3-203ENST00000586457 DPP7Q9UHL4 492 aa11.91□□□□□ -0.5
CLIP3-203ENST00000586457 TBX20Q9UMR3 447 aa11.91□□□□□ -0.5
CLIP3-203ENST00000586457 EXOC7Q9UPT5 735 aa11.91□□□□□ -0.5
CLIP3-203ENST00000586457 KIAA1671Q9BY89 1806 aa11.9□□□□□ -0.5
CLIP3-203ENST00000586457 GRXCR2A6NFK2 248 aa11.9□□□□□ -0.5
CLIP3-203ENST00000586457 CASTOR2A6NHX0 329 aa11.9□□□□□ -0.5
CLIP3-203ENST00000586457 TNFRSF10AO00220 468 aa11.9□□□□□ -0.5
CLIP3-203ENST00000586457 INPPL1O15357 1258 aa11.9□□□□□ -0.5
CLIP3-203ENST00000586457 SOD2P04179 222 aa11.9□□□□□ -0.5
CLIP3-203ENST00000586457 GLUD2P49448 558 aa11.9□□□□□ -0.5
CLIP3-203ENST00000586457 NCKAP1LP55160 1127 aa11.9□□□□□ -0.5
CLIP3-203ENST00000586457 CREMQ03060 361 aa11.9□□□□□ -0.5
CLIP3-203ENST00000586457 DNM1Q05193 864 aaKnown RBP11.9□□□□□ -0.5
CLIP3-203ENST00000586457 ELAVL2Q12926 359 aaKnown RBP11.9□□□□□ -0.5
CLIP3-203ENST00000586457 CTC1Q2NKJ3 1217 aa11.9□□□□□ -0.5
CLIP3-203ENST00000586457 USP41Q3LFD5 358 aa11.9□□□□□ -0.5
CLIP3-203ENST00000586457 SLFN12LQ6IEE8 588 aa11.9□□□□□ -0.5
CLIP3-203ENST00000586457 CEP57Q86XR8 500 aa11.9□□□□□ -0.5
CLIP3-203ENST00000586457 CEP57L1Q8IYX8 460 aa11.9□□□□□ -0.5
CLIP3-203ENST00000586457 SYCP3Q8IZU3 236 aa11.9□□□□□ -0.5
CLIP3-203ENST00000586457 GADD45GIP1Q8TAE8 222 aaPredicted RBP11.9□□□□□ -0.5
CLIP3-203ENST00000586457 AUTS2Q8WXX7 1259 aa11.9□□□□□ -0.5
CLIP3-203ENST00000586457 DHX58Q96C10 678 aa11.9□□□□□ -0.5
CLIP3-203ENST00000586457 SPATA32Q96LK8 384 aa11.9□□□□□ -0.5
CLIP3-203ENST00000586457 UROC1Q96N76 676 aa11.9□□□□□ -0.5
CLIP3-203ENST00000586457 POP1Q99575 1024 aaKnown RBP11.9□□□□□ -0.5
CLIP3-203ENST00000586457 ZBP1Q9H171 429 aa11.9□□□□□ -0.5
CLIP3-203ENST00000586457 CDT1Q9H211 546 aa11.9□□□□□ -0.5
CLIP3-203ENST00000586457 PANK4Q9NVE7 773 aa11.9□□□□□ -0.5
CLIP3-203ENST00000586457 SEL1LQ9UBV2 794 aa11.9□□□□□ -0.5
CLIP3-203ENST00000586457 ADAM28Q9UKQ2 775 aa11.9□□□□□ -0.5
CLIP3-203ENST00000586457 BARX2Q9UMQ3 279 aaPredicted RBP11.9□□□□□ -0.5
CLIP3-203ENST00000586457 PCDHB13Q9Y5F0 798 aa11.9□□□□□ -0.5
CLIP3-203ENST00000586457 SF3B1O75533 1304 aaKnown RBP eCLIP11.89□□□□□ -0.51
CLIP3-203ENST00000586457 XPOTO43592 962 aaKnown RBP11.89□□□□□ -0.51
CLIP3-203ENST00000586457 GCNT3O95395 438 aa11.89□□□□□ -0.51
CLIP3-203ENST00000586457 ADH1AP07327 375 aa11.89□□□□□ -0.51
CLIP3-203ENST00000586457 HOXB8P17481 243 aaPredicted RBP11.89□□□□□ -0.51
CLIP3-203ENST00000586457 NMT1P30419 496 aaKnown RBP11.89□□□□□ -0.51
CLIP3-203ENST00000586457 ZNF131P52739 623 aa11.89□□□□□ -0.51
CLIP3-203ENST00000586457 DSC1Q08554 894 aa11.89□□□□□ -0.51
CLIP3-203ENST00000586457 SMAD4Q13485 552 aaKnown RBP11.89□□□□□ -0.51
CLIP3-203ENST00000586457 DCLRE1AQ6PJP8 1040 aa11.89□□□□□ -0.51
CLIP3-203ENST00000586457 TMEM173Q86WV6 379 aaPredicted RBP11.89□□□□□ -0.51
CLIP3-203ENST00000586457 RABGGTAQ92696 567 aa11.89□□□□□ -0.51
CLIP3-203ENST00000586457 FAM212AQ96EL1 285 aa11.89□□□□□ -0.51
CLIP3-203ENST00000586457 DDX27Q96GQ7 796 aaKnown RBP11.89□□□□□ -0.51
CLIP3-203ENST00000586457 ZBTB45Q96K62 511 aaPredicted RBP11.89□□□□□ -0.51
CLIP3-203ENST00000586457 MSTO1Q9BUK6 570 aa11.89□□□□□ -0.51
CLIP3-203ENST00000586457 TBC1D7Q9P0N9 293 aa11.89□□□□□ -0.51
CLIP3-203ENST00000586457 EYSQ5T1H1 3165 aa11.89□□□□□ -0.51
CLIP3-203ENST00000586457 PLXNA4Q9HCM2 1894 aa11.89□□□□□ -0.51
CLIP3-203ENST00000586457 SMIM28A0A1B0GU29 152 aa11.88□□□□□ -0.51
CLIP3-203ENST00000586457 GOLGA6L4A6NEF3 574 aa11.88□□□□□ -0.51
CLIP3-203ENST00000586457 MYMKA6NI61 221 aa11.88□□□□□ -0.51
CLIP3-203ENST00000586457 POLR2DO15514 142 aaKnown RBP11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms