RNA–Protein interactions for RNA: ENST00000586435.1

LIG3-209, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 588 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-209ENST00000586435 ZBTB8OSQ8IWT0 167 aa13.14□□□□□ -0.31
LIG3-209ENST00000586435 NECAB1Q8N987 351 aa13.14□□□□□ -0.31
LIG3-209ENST00000586435 RIN2Q8WYP3 895 aaPredicted RBP13.14□□□□□ -0.31
LIG3-209ENST00000586435 NKD2Q969F2 451 aaPredicted RBP13.14□□□□□ -0.31
LIG3-209ENST00000586435 B3GALT6Q96L58 329 aa13.14□□□□□ -0.31
LIG3-209ENST00000586435 SNX27Q96L92 541 aa13.14□□□□□ -0.31
LIG3-209ENST00000586435 MYADMQ96S97 322 aa13.14□□□□□ -0.31
LIG3-209ENST00000586435 PRKD2Q9BZL6 878 aa13.14□□□□□ -0.31
LIG3-209ENST00000586435 C2orf40Q9H1Z8 148 aa13.14□□□□□ -0.31
LIG3-209ENST00000586435 GPRC5CQ9NQ84 441 aa13.14□□□□□ -0.31
LIG3-209ENST00000586435 PARP2Q9UGN5 583 aa13.14□□□□□ -0.31
LIG3-209ENST00000586435 FBXW11Q9UKB1 542 aa13.14□□□□□ -0.31
LIG3-209ENST00000586435 ZFP37Q9Y6Q3 630 aaPredicted RBP13.14□□□□□ -0.31
LIG3-209ENST00000586435 MIA3Q5JRA6 1907 aa13.13□□□□□ -0.31
LIG3-209ENST00000586435 DMDP11532 3685 aa13.13□□□□□ -0.31
LIG3-209ENST00000586435 N4BP3O15049 544 aa13.13□□□□□ -0.31
LIG3-209ENST00000586435 PI15O43692 258 aa13.13□□□□□ -0.31
LIG3-209ENST00000586435 ZMYND10O75800 440 aa13.13□□□□□ -0.31
LIG3-209ENST00000586435 RTP2Q5QGT7 225 aa13.13□□□□□ -0.31
LIG3-209ENST00000586435 CATSPER3Q86XQ3 398 aa13.13□□□□□ -0.31
LIG3-209ENST00000586435 PALB2Q86YC2 1186 aa13.13□□□□□ -0.31
LIG3-209ENST00000586435 SLC44A3Q8N4M1 653 aa13.13□□□□□ -0.31
LIG3-209ENST00000586435 DTWD2Q8NBA8 298 aa13.13□□□□□ -0.31
LIG3-209ENST00000586435 RSAD2Q8WXG1 361 aa13.13□□□□□ -0.31
LIG3-209ENST00000586435 PIK3R5Q8WYR1 880 aa13.13□□□□□ -0.31
LIG3-209ENST00000586435 NACC1Q96RE7 527 aa13.13□□□□□ -0.31
LIG3-209ENST00000586435 POLR3CQ9BUI4 534 aaPredicted RBP13.13□□□□□ -0.31
LIG3-209ENST00000586435 TMEM60Q9H2L4 133 aa13.13□□□□□ -0.31
LIG3-209ENST00000586435 PIDD1Q9HB75 910 aa13.13□□□□□ -0.31
LIG3-209ENST00000586435 KLK14Q9P0G3 267 aa13.13□□□□□ -0.31
LIG3-209ENST00000586435 NOTCH4Q99466 2003 aa13.12□□□□□ -0.31
LIG3-209ENST00000586435 KRBA1A5PL33 1030 aa13.12□□□□□ -0.31
LIG3-209ENST00000586435 ANHXE9PGG2 379 aa13.12□□□□□ -0.31
LIG3-209ENST00000586435 PTGESO14684 152 aa13.12□□□□□ -0.31
LIG3-209ENST00000586435 JAK2O60674 1132 aa13.12□□□□□ -0.31
LIG3-209ENST00000586435 MED24O75448 989 aa13.12□□□□□ -0.31
LIG3-209ENST00000586435 TADA2AO75478 443 aa13.12□□□□□ -0.31
LIG3-209ENST00000586435 CFHP08603 1231 aa13.12□□□□□ -0.31
LIG3-209ENST00000586435 HNRNPA1P09651 372 aaKnown RBP eCLIP13.12□□□□□ -0.31
LIG3-209ENST00000586435 SPATA31D3P0C874 917 aa13.12□□□□□ -0.31
LIG3-209ENST00000586435 LAMP2P13473 410 aa13.12□□□□□ -0.31
LIG3-209ENST00000586435 ATP2B1P20020 1258 aa13.12□□□□□ -0.31
LIG3-209ENST00000586435 MUTP22033 750 aa13.12□□□□□ -0.31
LIG3-209ENST00000586435 HOXA9P31269 272 aa13.12□□□□□ -0.31
LIG3-209ENST00000586435 NAMPTP43490 491 aa13.12□□□□□ -0.31
LIG3-209ENST00000586435 ELAVL2Q12926 359 aaKnown RBP13.12□□□□□ -0.31
LIG3-209ENST00000586435 HTR4Q13639 388 aa13.12□□□□□ -0.31
LIG3-209ENST00000586435 ANGPT1Q15389 498 aa13.12□□□□□ -0.31
LIG3-209ENST00000586435 NAB2Q15742 525 aa13.12□□□□□ -0.31
LIG3-209ENST00000586435 MAPK6Q16659 721 aa13.12□□□□□ -0.31
LIG3-209ENST00000586435 PDXDC1Q6P996 788 aa13.12□□□□□ -0.31
LIG3-209ENST00000586435 SPATA31D4Q6ZUB0 917 aa13.12□□□□□ -0.31
LIG3-209ENST00000586435 FRMD5Q7Z6J6 570 aa13.12□□□□□ -0.31
LIG3-209ENST00000586435 PAAF1Q9BRP4 392 aa13.12□□□□□ -0.31
LIG3-209ENST00000586435 TTPALQ9BTX7 342 aa13.12□□□□□ -0.31
LIG3-209ENST00000586435 CCDC113Q9H0I3 377 aa13.12□□□□□ -0.31
LIG3-209ENST00000586435 PDZD7Q9H5P4 517 aa13.12□□□□□ -0.31
LIG3-209ENST00000586435 SLC2A4RGQ9NR83 387 aa13.12□□□□□ -0.31
LIG3-209ENST00000586435 CITO14578 2027 aa13.12□□□□□ -0.31
LIG3-209ENST00000586435 A0A087WWV3 80 aa13.11□□□□□ -0.31
LIG3-209ENST00000586435 ACKR2O00590 384 aa13.11□□□□□ -0.31
LIG3-209ENST00000586435 RECQL4O94761 1208 aa13.11□□□□□ -0.31
LIG3-209ENST00000586435 KIF4AO95239 1232 aa13.11□□□□□ -0.31
LIG3-209ENST00000586435 THP07101 528 aa13.11□□□□□ -0.31
LIG3-209ENST00000586435 POU2F2P09086 479 aa13.11□□□□□ -0.31
LIG3-209ENST00000586435 MYBP10242 640 aa13.11□□□□□ -0.31
LIG3-209ENST00000586435 RPL17P18621 184 aaKnown RBP13.11□□□□□ -0.31
LIG3-209ENST00000586435 CYP11B2P19099 503 aa13.11□□□□□ -0.31
LIG3-209ENST00000586435 RPA1P27694 616 aa13.11□□□□□ -0.31
LIG3-209ENST00000586435 MCM7P33993 719 aa13.11□□□□□ -0.31
LIG3-209ENST00000586435 ST3GAL1Q11201 340 aa13.11□□□□□ -0.31
LIG3-209ENST00000586435 PRPF4BQ13523 1007 aaKnown RBP13.11□□□□□ -0.31
LIG3-209ENST00000586435 PPP2R5AQ15172 486 aa13.11□□□□□ -0.31
LIG3-209ENST00000586435 PHLDB3Q6NSJ2 640 aa13.11□□□□□ -0.31
LIG3-209ENST00000586435 POTEGQ6S5H5 508 aa13.11□□□□□ -0.31
LIG3-209ENST00000586435 PRSS55Q6UWB4 352 aaPredicted RBP13.11□□□□□ -0.31
LIG3-209ENST00000586435 GET4Q7L5D6 327 aaPredicted RBP13.11□□□□□ -0.31
LIG3-209ENST00000586435 MAEAQ7L5Y9 396 aa13.11□□□□□ -0.31
LIG3-209ENST00000586435 GLYCTKQ8IVS8 523 aa13.11□□□□□ -0.31
LIG3-209ENST00000586435 ERMNQ8TAM6 284 aa13.11□□□□□ -0.31
LIG3-209ENST00000586435 BSNDQ8WZ55 320 aa13.11□□□□□ -0.31
LIG3-209ENST00000586435 CLSTN3Q9BQT9 956 aa13.11□□□□□ -0.31
LIG3-209ENST00000586435 ADPGKQ9BRR6 497 aa13.11□□□□□ -0.31
LIG3-209ENST00000586435 CACNG4Q9UBN1 327 aa13.11□□□□□ -0.31
LIG3-209ENST00000586435 VPS13AQ96RL7 3174 aa13.11□□□□□ -0.31
LIG3-209ENST00000586435 CASTOR2A6NHX0 329 aa13.1□□□□□ -0.31
LIG3-209ENST00000586435 TTLL13PA6NNM8 815 aa13.1□□□□□ -0.31
LIG3-209ENST00000586435 TMEM189-UBE2V1I3L0A0 370 aa13.1□□□□□ -0.31
LIG3-209ENST00000586435 EIF5BO60841 1220 aaKnown RBP13.1□□□□□ -0.31
LIG3-209ENST00000586435 PRKCBP05771 671 aa13.1□□□□□ -0.31
LIG3-209ENST00000586435 OR52Z1P0C646 297 aa13.1□□□□□ -0.31
LIG3-209ENST00000586435 RBM25P49756 843 aaKnown RBP13.1□□□□□ -0.31
LIG3-209ENST00000586435 FOXK2Q01167 660 aa13.1□□□□□ -0.31
LIG3-209ENST00000586435 SAFBQ15424 915 aaKnown RBP eCLIP13.1□□□□□ -0.31
LIG3-209ENST00000586435 PSMD5Q16401 504 aa13.1□□□□□ -0.31
LIG3-209ENST00000586435 DCAF4L1Q3SXM0 396 aa13.1□□□□□ -0.31
LIG3-209ENST00000586435 LIN9Q5TKA1 542 aa13.1□□□□□ -0.31
LIG3-209ENST00000586435 FAM171A1Q5VUB5 890 aa13.1□□□□□ -0.31
LIG3-209ENST00000586435 HAUS3Q68CZ6 603 aa13.1□□□□□ -0.31
LIG3-209ENST00000586435 PADI6Q6TGC4 694 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms