RNA–Protein interactions for RNA: ENST00000572750.1

CHD3-215, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 750 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-215ENST00000572750 GTF2BQ00403 316 aa17.32■□□□□ 0.36
CHD3-215ENST00000572750 NOLC1Q14978 699 aaKnown RBP eCLIP17.32■□□□□ 0.36
CHD3-215ENST00000572750 CNNM4Q6P4Q7 775 aa17.32■□□□□ 0.36
CHD3-215ENST00000572750 MPZL3Q6UWV2 235 aa17.32■□□□□ 0.36
CHD3-215ENST00000572750 ZPBP2Q6X784 338 aa17.32■□□□□ 0.36
CHD3-215ENST00000572750 MAP4K3Q8IVH8 894 aa17.32■□□□□ 0.36
CHD3-215ENST00000572750 GLIS3Q8NEA6 775 aa17.32■□□□□ 0.36
CHD3-215ENST00000572750 KCNN1Q92952 543 aa17.32■□□□□ 0.36
CHD3-215ENST00000572750 ZBTB45Q96K62 511 aaPredicted RBP17.32■□□□□ 0.36
CHD3-215ENST00000572750 GBP3Q9H0R5 595 aa17.32■□□□□ 0.36
CHD3-215ENST00000572750 IKZF4Q9H2S9 585 aa17.32■□□□□ 0.36
CHD3-215ENST00000572750 ST6GALNAC4Q9H4F1 302 aa17.32■□□□□ 0.36
CHD3-215ENST00000572750 SNTG2Q9NY99 539 aa17.32■□□□□ 0.36
CHD3-215ENST00000572750 KLK14Q9P0G3 267 aa17.32■□□□□ 0.36
CHD3-215ENST00000572750 PARP2Q9UGN5 583 aa17.32■□□□□ 0.36
CHD3-215ENST00000572750 USP25Q9UHP3 1055 aa17.32■□□□□ 0.36
CHD3-215ENST00000572750 GDAQ9Y2T3 454 aa17.32■□□□□ 0.36
CHD3-215ENST00000572750 MTCH2Q9Y6C9 303 aa17.32■□□□□ 0.36
CHD3-215ENST00000572750 CITO14578 2027 aa17.31■□□□□ 0.36
CHD3-215ENST00000572750 TISP43B9A030 160 aa17.31■□□□□ 0.36
CHD3-215ENST00000572750 ZC3H11AO75152 810 aaKnown RBP eCLIP17.31■□□□□ 0.36
CHD3-215ENST00000572750 TOM1L1O75674 476 aa17.31■□□□□ 0.36
CHD3-215ENST00000572750 CSPG5O95196 566 aa17.31■□□□□ 0.36
CHD3-215ENST00000572750 PRR29P0C7W0 189 aa17.31■□□□□ 0.36
CHD3-215ENST00000572750 SCP2P22307 547 aa17.31■□□□□ 0.36
CHD3-215ENST00000572750 MATR3P43243 847 aaKnown RBP eCLIP17.31■□□□□ 0.36
CHD3-215ENST00000572750 LIG4P49917 911 aa17.31■□□□□ 0.36
CHD3-215ENST00000572750 NHLH1Q02575 133 aa17.31■□□□□ 0.36
CHD3-215ENST00000572750 RNASELQ05823 741 aaKnown RBP17.31■□□□□ 0.36
CHD3-215ENST00000572750 KCNA1Q09470 495 aa17.31■□□□□ 0.36
CHD3-215ENST00000572750 SKIV2LQ15477 1246 aaKnown RBP17.31■□□□□ 0.36
CHD3-215ENST00000572750 SLC39A4Q6P5W5 647 aa17.31■□□□□ 0.36
CHD3-215ENST00000572750 ZNF720Q7Z2F6 126 aa17.31■□□□□ 0.36
CHD3-215ENST00000572750 COLGALT1Q8NBJ5 622 aa17.31■□□□□ 0.36
CHD3-215ENST00000572750 TCHPQ9BT92 498 aa17.31■□□□□ 0.36
CHD3-215ENST00000572750 HAPLN2Q9GZV7 340 aa17.31■□□□□ 0.36
CHD3-215ENST00000572750 UBN1Q9NPG3 1134 aa17.31■□□□□ 0.36
CHD3-215ENST00000572750 GIT1Q9Y2X7 761 aa17.31■□□□□ 0.36
CHD3-215ENST00000572750 TRIP11Q15643 1979 aa17.31■□□□□ 0.36
CHD3-215ENST00000572750 PDCD11Q14690 1871 aaKnown RBP17.31■□□□□ 0.36
CHD3-215ENST00000572750 C5orf42Q9H799 3197 aa17.3■□□□□ 0.36
CHD3-215ENST00000572750 BRWD1Q9NSI6 2320 aa17.3■□□□□ 0.36
CHD3-215ENST00000572750 C5orf67F2Z3F1 127 aa17.3■□□□□ 0.36
CHD3-215ENST00000572750 GADD45BO75293 160 aaPredicted RBP17.3■□□□□ 0.36
CHD3-215ENST00000572750 ZNF202O95125 648 aa17.3■□□□□ 0.36
CHD3-215ENST00000572750 PIGRP01833 764 aa17.3■□□□□ 0.36
CHD3-215ENST00000572750 MCF2P10911 925 aa17.3■□□□□ 0.36
CHD3-215ENST00000572750 LAG3P18627 525 aa17.3■□□□□ 0.36
CHD3-215ENST00000572750 OSTNP61366 133 aa17.3■□□□□ 0.36
CHD3-215ENST00000572750 GPM6BQ13491 265 aa17.3■□□□□ 0.36
CHD3-215ENST00000572750 CSPP1Q1MSJ5 1256 aa17.3■□□□□ 0.36
CHD3-215ENST00000572750 KRBA2Q6ZNG9 492 aa17.3■□□□□ 0.36
CHD3-215ENST00000572750 UNC13DQ70J99 1090 aa17.3■□□□□ 0.36
CHD3-215ENST00000572750 APBB1IPQ7Z5R6 666 aaPredicted RBP17.3■□□□□ 0.36
CHD3-215ENST00000572750 FMR1NBQ8N0W7 255 aaPredicted RBP17.3■□□□□ 0.36
CHD3-215ENST00000572750 HVCN1Q96D96 273 aa17.3■□□□□ 0.36
CHD3-215ENST00000572750 C11orf84Q9BUA3 381 aaPredicted RBP17.3■□□□□ 0.36
CHD3-215ENST00000572750 STRA6Q9BX79 667 aa17.3■□□□□ 0.36
CHD3-215ENST00000572750 CXCL16Q9H2A7 254 aa17.3■□□□□ 0.36
CHD3-215ENST00000572750 DNAJB4Q9UDY4 337 aa17.3■□□□□ 0.36
CHD3-215ENST00000572750 PLAGL2Q9UPG8 496 aa17.3■□□□□ 0.36
CHD3-215ENST00000572750 ZMYM2Q9UBW7 1377 aa17.29■□□□□ 0.36
CHD3-215ENST00000572750 H3BNC9 293 aa17.29■□□□□ 0.36
CHD3-215ENST00000572750 INPPL1O15357 1258 aa17.29■□□□□ 0.36
CHD3-215ENST00000572750 POU3F3P20264 500 aaPredicted RBP17.29■□□□□ 0.36
CHD3-215ENST00000572750 ABCD1P33897 745 aa17.29■□□□□ 0.36
CHD3-215ENST00000572750 GRM5P41594 1212 aa17.29■□□□□ 0.36
CHD3-215ENST00000572750 FAM160A1Q05DH4 1040 aa17.29■□□□□ 0.36
CHD3-215ENST00000572750 MCL1Q07820 350 aa17.29■□□□□ 0.36
CHD3-215ENST00000572750 SEZ6Q53EL9 994 aa17.29■□□□□ 0.36
CHD3-215ENST00000572750 FAM26FQ5R3K3 315 aa17.29■□□□□ 0.36
CHD3-215ENST00000572750 L1TD1Q5T7N2 865 aaKnown RBP17.29■□□□□ 0.36
CHD3-215ENST00000572750 ZNF280BQ86YH2 543 aa17.29■□□□□ 0.36
CHD3-215ENST00000572750 THNSL1Q8IYQ7 743 aa17.29■□□□□ 0.36
CHD3-215ENST00000572750 KLHL23Q8NBE8 558 aa17.29■□□□□ 0.36
CHD3-215ENST00000572750 TMEM87AQ8NBN3 555 aa17.29■□□□□ 0.36
CHD3-215ENST00000572750 GSTCDQ8NEC7 633 aa17.29■□□□□ 0.36
CHD3-215ENST00000572750 RSPH1Q8WYR4 309 aa17.29■□□□□ 0.36
CHD3-215ENST00000572750 ZNF558Q96NG5 402 aa17.29■□□□□ 0.36
CHD3-215ENST00000572750 RPS6KC1Q96S38 1066 aa17.29■□□□□ 0.36
CHD3-215ENST00000572750 PLVAPQ9BX97 442 aa17.29■□□□□ 0.36
CHD3-215ENST00000572750 NRDE2Q9H7Z3 1164 aa17.29■□□□□ 0.36
CHD3-215ENST00000572750 ALG13Q9NP73 1137 aaKnown RBP17.29■□□□□ 0.36
CHD3-215ENST00000572750 AAASQ9NRG9 546 aa17.29■□□□□ 0.36
CHD3-215ENST00000572750 PCDHB12Q9Y5F1 795 aa17.29■□□□□ 0.36
CHD3-215ENST00000572750 ANKRD63C9JTQ0 380 aa17.28■□□□□ 0.36
CHD3-215ENST00000572750 PTGESO14684 152 aa17.28■□□□□ 0.36
CHD3-215ENST00000572750 GRM6O15303 877 aa17.28■□□□□ 0.36
CHD3-215ENST00000572750 CLDN3O15551 220 aa17.28■□□□□ 0.36
CHD3-215ENST00000572750 GTPBP6O43824 516 aaPredicted RBP17.28■□□□□ 0.36
CHD3-215ENST00000572750 KLRC4O43908 158 aa17.28■□□□□ 0.36
CHD3-215ENST00000572750 DDHD2O94830 711 aa17.28■□□□□ 0.36
CHD3-215ENST00000572750 PRPF6O94906 941 aaKnown RBP17.28■□□□□ 0.36
CHD3-215ENST00000572750 ITGB1P05556 798 aa17.28■□□□□ 0.36
CHD3-215ENST00000572750 BCAR1P56945 870 aa17.28■□□□□ 0.36
CHD3-215ENST00000572750 EHHADHQ08426 723 aa17.28■□□□□ 0.36
CHD3-215ENST00000572750 ALCAMQ13740 583 aa17.28■□□□□ 0.36
CHD3-215ENST00000572750 KCNT2Q6UVM3 1135 aa17.28■□□□□ 0.36
CHD3-215ENST00000572750 CCDC94Q9BW85 323 aaPredicted RBP17.28■□□□□ 0.36
CHD3-215ENST00000572750 MIOSQ9NXC5 875 aa17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms