RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 BLZF1Q9H2G9 400 aa22.56■■□□□ 1.2
VPS53-210ENST00000571456 TMEM206Q9H813 350 aa22.56■■□□□ 1.2
VPS53-210ENST00000571456 UBN1Q9NPG3 1134 aa22.56■■□□□ 1.2
VPS53-210ENST00000571456 FAM105AQ9NUU6 356 aa22.56■■□□□ 1.2
VPS53-210ENST00000571456 LRFN2Q9ULH4 789 aa22.56■■□□□ 1.2
VPS53-210ENST00000571456 PCDHB7Q9Y5E2 793 aa22.56■■□□□ 1.2
VPS53-210ENST00000571456 MGEA5O60502 916 aa22.55■■□□□ 1.2
VPS53-210ENST00000571456 TOM1L1O75674 476 aa22.55■■□□□ 1.2
VPS53-210ENST00000571456 MBD3O95983 291 aa22.55■■□□□ 1.2
VPS53-210ENST00000571456 RPN1P04843 607 aaKnown RBP22.55■■□□□ 1.2
VPS53-210ENST00000571456 ATF7IP2Q5U623 682 aa22.55■■□□□ 1.2
VPS53-210ENST00000571456 RNF135Q8IUD6 432 aa22.55■■□□□ 1.2
VPS53-210ENST00000571456 TRIM6Q9C030 488 aaPredicted RBP22.55■■□□□ 1.2
VPS53-210ENST00000571456 CLDND1Q9NY35 253 aa22.55■■□□□ 1.2
VPS53-210ENST00000571456 KMT2EQ8IZD2 1858 aa22.55■■□□□ 1.2
VPS53-210ENST00000571456 COL4A6Q14031 1691 aa22.55■■□□□ 1.2
VPS53-210ENST00000571456 RHOBTB3O94955 611 aa22.54■■□□□ 1.2
VPS53-210ENST00000571456 GCNT3O95395 438 aa22.54■■□□□ 1.2
VPS53-210ENST00000571456 NMT1P30419 496 aaKnown RBP22.54■■□□□ 1.2
VPS53-210ENST00000571456 SNRPFP62306 86 aaKnown RBP22.54■■□□□ 1.2
VPS53-210ENST00000571456 SMAD2Q15796 467 aaKnown RBP22.54■■□□□ 1.2
VPS53-210ENST00000571456 EPC2Q52LR7 807 aa22.54■■□□□ 1.2
VPS53-210ENST00000571456 L1TD1Q5T7N2 865 aaKnown RBP22.54■■□□□ 1.2
VPS53-210ENST00000571456 SLFN12LQ6IEE8 588 aa22.54■■□□□ 1.2
VPS53-210ENST00000571456 LIN28BQ6ZN17 250 aaKnown RBP eCLIP22.54■■□□□ 1.2
VPS53-210ENST00000571456 TAS1R3Q7RTX0 852 aa22.54■■□□□ 1.2
VPS53-210ENST00000571456 ECHDC2Q86YB7 292 aa22.54■■□□□ 1.2
VPS53-210ENST00000571456 GRAMD1CQ8IYS0 662 aa22.54■■□□□ 1.2
VPS53-210ENST00000571456 CRIPAKQ8N1N5 446 aa22.54■■□□□ 1.2
VPS53-210ENST00000571456 PBXIP1Q96AQ6 731 aa22.54■■□□□ 1.2
VPS53-210ENST00000571456 SAMD11Q96NU1 681 aa22.54■■□□□ 1.2
VPS53-210ENST00000571456 ACCSQ96QU6 501 aa22.54■■□□□ 1.2
VPS53-210ENST00000571456 ACO2Q99798 780 aaKnown RBP22.54■■□□□ 1.2
VPS53-210ENST00000571456 NSUN3Q9H649 340 aaKnown RBP22.54■■□□□ 1.2
VPS53-210ENST00000571456 HNRNPDLO14979 420 aaKnown RBP22.53■■□□□ 1.2
VPS53-210ENST00000571456 KLRC4O43908 158 aa22.53■■□□□ 1.2
VPS53-210ENST00000571456 KYAT1Q16773 422 aa22.53■■□□□ 1.2
VPS53-210ENST00000571456 MRPL10Q7Z7H8 261 aaKnown RBP22.53■■□□□ 1.2
VPS53-210ENST00000571456 SUGP1Q8IWZ8 645 aaKnown RBP22.53■■□□□ 1.2
VPS53-210ENST00000571456 SPATA20Q8TB22 786 aa22.53■■□□□ 1.2
VPS53-210ENST00000571456 SP7Q8TDD2 431 aaPredicted RBP22.53■■□□□ 1.2
VPS53-210ENST00000571456 BICD1Q96G01 975 aa22.53■■□□□ 1.2
VPS53-210ENST00000571456 PDZD7Q9H5P4 517 aa22.53■■□□□ 1.2
VPS53-210ENST00000571456 PCDHB2Q9Y5E7 798 aa22.53■■□□□ 1.2
VPS53-210ENST00000571456 MYO15AQ9UKN7 3530 aa22.52■■□□□ 1.2
VPS53-210ENST00000571456 TMEM221A6NGB7 291 aa22.52■■□□□ 1.2
VPS53-210ENST00000571456 H3BNC9 293 aa22.52■■□□□ 1.2
VPS53-210ENST00000571456 M0R296 226 aa22.52■■□□□ 1.2
VPS53-210ENST00000571456 B4GALT5O43286 388 aa22.52■■□□□ 1.2
VPS53-210ENST00000571456 NCK2O43639 380 aa22.52■■□□□ 1.2
VPS53-210ENST00000571456 MCF2P10911 925 aa22.52■■□□□ 1.2
VPS53-210ENST00000571456 PROZP22891 400 aa22.52■■□□□ 1.2
VPS53-210ENST00000571456 LTBRP36941 435 aa22.52■■□□□ 1.2
VPS53-210ENST00000571456 LIG4P49917 911 aa22.52■■□□□ 1.2
VPS53-210ENST00000571456 HTRA4P83105 476 aaPredicted RBP22.52■■□□□ 1.2
VPS53-210ENST00000571456 GPM6BQ13491 265 aa22.52■■□□□ 1.2
VPS53-210ENST00000571456 HSP90AA2PQ14568 343 aaPredicted RBP22.52■■□□□ 1.2
VPS53-210ENST00000571456 KMT5BQ4FZB7 885 aa22.52■■□□□ 1.2
VPS53-210ENST00000571456 NT5DC1Q5TFE4 455 aa22.52■■□□□ 1.2
VPS53-210ENST00000571456 MPZL3Q6UWV2 235 aa22.52■■□□□ 1.2
VPS53-210ENST00000571456 SMARCE1Q969G3 411 aa22.52■■□□□ 1.2
VPS53-210ENST00000571456 CPB2Q96IY4 423 aa22.52■■□□□ 1.2
VPS53-210ENST00000571456 PTPRHQ9HD43 1115 aa22.52■■□□□ 1.2
VPS53-210ENST00000571456 CGNQ9P2M7 1197 aaKnown RBP22.52■■□□□ 1.2
VPS53-210ENST00000571456 ATG2AQ2TAZ0 1938 aa22.52■■□□□ 1.2
VPS53-210ENST00000571456 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP22.51■■□□□ 1.19
VPS53-210ENST00000571456 CARNS1A5YM72 827 aa22.51■■□□□ 1.19
VPS53-210ENST00000571456 BMT2Q1RMZ1 405 aa22.51■■□□□ 1.19
VPS53-210ENST00000571456 UBXN11Q5T124 520 aa22.51■■□□□ 1.19
VPS53-210ENST00000571456 TRIM67Q6ZTA4 783 aa22.51■■□□□ 1.19
VPS53-210ENST00000571456 EPM2AIP1Q7L775 607 aaPredicted RBP22.51■■□□□ 1.19
VPS53-210ENST00000571456 ZNF598Q86UK7 904 aaKnown RBP22.51■■□□□ 1.19
VPS53-210ENST00000571456 ZNF507Q8TCN5 953 aa22.51■■□□□ 1.19
VPS53-210ENST00000571456 TCHPQ9BT92 498 aa22.51■■□□□ 1.19
VPS53-210ENST00000571456 TARS2Q9BW92 718 aaKnown RBP22.51■■□□□ 1.19
VPS53-210ENST00000571456 DCHS1Q96JQ0 3298 aa22.5■■□□□ 1.19
VPS53-210ENST00000571456 KIAA0391O15091 583 aaKnown RBP22.5■■□□□ 1.19
VPS53-210ENST00000571456 CLDN3O15551 220 aa22.5■■□□□ 1.19
VPS53-210ENST00000571456 DGKIO75912 1065 aa22.5■■□□□ 1.19
VPS53-210ENST00000571456 CASP1P29466 404 aa22.5■■□□□ 1.19
VPS53-210ENST00000571456 PPP1R2P41236 205 aa22.5■■□□□ 1.19
VPS53-210ENST00000571456 POU5F1Q01860 360 aaKnown RBP22.5■■□□□ 1.19
VPS53-210ENST00000571456 PNOCQ13519 176 aa22.5■■□□□ 1.19
VPS53-210ENST00000571456 ABI1Q8IZP0 508 aa22.5■■□□□ 1.19
VPS53-210ENST00000571456 SYCP3Q8IZU3 236 aa22.5■■□□□ 1.19
VPS53-210ENST00000571456 FAM86C1Q9NVL1 165 aa22.5■■□□□ 1.19
VPS53-210ENST00000571456 TBC1D7Q9P0N9 293 aa22.5■■□□□ 1.19
VPS53-210ENST00000571456 RALGAPA2Q2PPJ7 1873 aa22.49■■□□□ 1.19
VPS53-210ENST00000571456 MBTPS2O43462 519 aa22.49■■□□□ 1.19
VPS53-210ENST00000571456 PRR29P0C7W0 189 aa22.49■■□□□ 1.19
VPS53-210ENST00000571456 MCM4P33991 863 aa22.49■■□□□ 1.19
VPS53-210ENST00000571456 MCL1Q07820 350 aa22.49■■□□□ 1.19
VPS53-210ENST00000571456 NOLC1Q14978 699 aaKnown RBP eCLIP22.49■■□□□ 1.19
VPS53-210ENST00000571456 CLUL1Q15846 466 aa22.49■■□□□ 1.19
VPS53-210ENST00000571456 ZNF568Q3ZCX4 644 aa22.49■■□□□ 1.19
VPS53-210ENST00000571456 ZC2HC1CQ53FD0 456 aaPredicted RBP22.49■■□□□ 1.19
VPS53-210ENST00000571456 CMTR2Q8IYT2 770 aaKnown RBP22.49■■□□□ 1.19
VPS53-210ENST00000571456 GOLGA5Q8TBA6 731 aa22.49■■□□□ 1.19
VPS53-210ENST00000571456 YME1L1Q96TA2 773 aa22.49■■□□□ 1.19
VPS53-210ENST00000571456 MRPL9Q9BYD2 267 aaKnown RBP22.49■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms