RNA–Protein interactions for RNA: ENST00000570359.1

VPS53-206, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 2,781 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-206ENST00000570359 RBAKQ9NYW8 714 aaPredicted RBP10.69□□□□□ -0.7
VPS53-206ENST00000570359 UMODL1Q5DID0 1318 aa10.69□□□□□ -0.7
VPS53-206ENST00000570359 GSTTP1A0A1W2PQM5 241 aa10.68□□□□□ -0.7
VPS53-206ENST00000570359 TTI1O43156 1089 aa10.68□□□□□ -0.7
VPS53-206ENST00000570359 SPOPO43791 374 aa10.68□□□□□ -0.7
VPS53-206ENST00000570359 GJB6O95452 261 aa10.68□□□□□ -0.7
VPS53-206ENST00000570359 CFHP08603 1231 aa10.68□□□□□ -0.7
VPS53-206ENST00000570359 POTEJP0CG39 1038 aa10.68□□□□□ -0.7
VPS53-206ENST00000570359 CHRNB2P17787 502 aa10.68□□□□□ -0.7
VPS53-206ENST00000570359 KIF22Q14807 665 aa10.68□□□□□ -0.7
VPS53-206ENST00000570359 DCAF12L1Q5VU92 463 aa10.68□□□□□ -0.7
VPS53-206ENST00000570359 RHPN2Q8IUC4 686 aa10.68□□□□□ -0.7
VPS53-206ENST00000570359 TEX2Q8IWB9 1127 aa10.68□□□□□ -0.7
VPS53-206ENST00000570359 CHST13Q8NET6 341 aa10.68□□□□□ -0.7
VPS53-206ENST00000570359 LMBR1Q8WVP7 490 aa10.68□□□□□ -0.7
VPS53-206ENST00000570359 ALG3Q92685 438 aa10.68□□□□□ -0.7
VPS53-206ENST00000570359 TMEM8AQ9HCN3 771 aa10.68□□□□□ -0.7
VPS53-206ENST00000570359 MAFGO15525 162 aa10.68□□□□□ -0.7
VPS53-206ENST00000570359 TMEM253P0C7T8 217 aa10.68□□□□□ -0.7
VPS53-206ENST00000570359 CYP11B1P15538 503 aa10.68□□□□□ -0.7
VPS53-206ENST00000570359 IRX5P78411 483 aaPredicted RBP10.68□□□□□ -0.7
VPS53-206ENST00000570359 KCTD2Q14681 263 aa10.68□□□□□ -0.7
VPS53-206ENST00000570359 XRRA1Q6P2D8 792 aa10.68□□□□□ -0.7
VPS53-206ENST00000570359 IFT20Q8IY31 132 aa10.68□□□□□ -0.7
VPS53-206ENST00000570359 RNF149Q8NC42 400 aa10.68□□□□□ -0.7
VPS53-206ENST00000570359 OR5B17Q8NGF7 314 aa10.68□□□□□ -0.7
VPS53-206ENST00000570359 PRPF31Q8WWY3 499 aaKnown RBP10.68□□□□□ -0.7
VPS53-206ENST00000570359 NUP85Q9BW27 656 aa10.68□□□□□ -0.7
VPS53-206ENST00000570359 PNMA2Q9UL42 364 aa10.68□□□□□ -0.7
VPS53-206ENST00000570359 BRCA2P51587 3418 aa10.68□□□□□ -0.7
VPS53-206ENST00000570359 TULP2O00295 520 aa10.67□□□□□ -0.7
VPS53-206ENST00000570359 SART1O43290 800 aaKnown RBP10.67□□□□□ -0.7
VPS53-206ENST00000570359 DKC1O60832 514 aaKnown RBP eCLIP10.67□□□□□ -0.7
VPS53-206ENST00000570359 SYF2O95926 243 aaKnown RBP10.67□□□□□ -0.7
VPS53-206ENST00000570359 HLA-DRAP01903 254 aa10.67□□□□□ -0.7
VPS53-206ENST00000570359 KRT14P02533 472 aa10.67□□□□□ -0.7
VPS53-206ENST00000570359 FMO1Q01740 532 aa10.67□□□□□ -0.7
VPS53-206ENST00000570359 CAPSQ13938 189 aa10.67□□□□□ -0.7
VPS53-206ENST00000570359 NOL9Q5SY16 702 aaKnown RBP10.67□□□□□ -0.7
VPS53-206ENST00000570359 TDRD10Q5VZ19 366 aaKnown RBP10.67□□□□□ -0.7
VPS53-206ENST00000570359 MAATS1Q7Z4T9 603 aa10.67□□□□□ -0.7
VPS53-206ENST00000570359 CCDC125Q86Z20 511 aa10.67□□□□□ -0.7
VPS53-206ENST00000570359 THNSL1Q8IYQ7 743 aa10.67□□□□□ -0.7
VPS53-206ENST00000570359 SH2D3CQ8N5H7 860 aa10.67□□□□□ -0.7
VPS53-206ENST00000570359 OR2W6PQ8NHA6 318 aa10.67□□□□□ -0.7
VPS53-206ENST00000570359 HELQQ8TDG4 1101 aa10.67□□□□□ -0.7
VPS53-206ENST00000570359 AENQ8WTP8 325 aaKnown RBP10.67□□□□□ -0.7
VPS53-206ENST00000570359 RNPC3Q96LT9 517 aaKnown RBP10.67□□□□□ -0.7
VPS53-206ENST00000570359 SPATA33Q96N06 139 aa10.67□□□□□ -0.7
VPS53-206ENST00000570359 MMP19Q99542 508 aa10.67□□□□□ -0.7
VPS53-206ENST00000570359 PORCNQ9H237 461 aa10.67□□□□□ -0.7
VPS53-206ENST00000570359 ERVK-5Q9HDB9 667 aa10.67□□□□□ -0.7
VPS53-206ENST00000570359 GINS2Q9Y248 185 aa10.67□□□□□ -0.7
VPS53-206ENST00000570359 PTPN22Q9Y2R2 807 aa10.67□□□□□ -0.7
VPS53-206ENST00000570359 ALG6Q9Y672 507 aa10.67□□□□□ -0.7
VPS53-206ENST00000570359 LCTP09848 1927 aa10.67□□□□□ -0.7
VPS53-206ENST00000570359 ANKRD62A6NC57 917 aa10.67□□□□□ -0.7
VPS53-206ENST00000570359 DAPK3O43293 454 aa10.67□□□□□ -0.7
VPS53-206ENST00000570359 CAPN2P17655 700 aa10.67□□□□□ -0.7
VPS53-206ENST00000570359 COMTP21964 271 aa10.67□□□□□ -0.7
VPS53-206ENST00000570359 CLCN3P51790 818 aa10.67□□□□□ -0.7
VPS53-206ENST00000570359 ERVK-9P63128 1117 aa10.67□□□□□ -0.7
VPS53-206ENST00000570359 TMEM270Q6UE05 265 aa10.67□□□□□ -0.7
VPS53-206ENST00000570359 RIOX2Q8IUF8 465 aa10.67□□□□□ -0.7
VPS53-206ENST00000570359 SYCE1Q8N0S2 351 aa10.67□□□□□ -0.7
VPS53-206ENST00000570359 RDM1Q8NG50 284 aa10.67□□□□□ -0.7
VPS53-206ENST00000570359 FAM118BQ9BPY3 351 aa10.67□□□□□ -0.7
VPS53-206ENST00000570359 BUD13Q9BRD0 619 aaKnown RBP eCLIP10.67□□□□□ -0.7
VPS53-206ENST00000570359 TIPINQ9BVW5 301 aa10.67□□□□□ -0.7
VPS53-206ENST00000570359 UBXN6Q9BZV1 441 aa10.67□□□□□ -0.7
VPS53-206ENST00000570359 ARHGAP28Q9P2N2 729 aa10.67□□□□□ -0.7
VPS53-206ENST00000570359 NENFQ9UMX5 172 aa10.67□□□□□ -0.7
VPS53-206ENST00000570359 NFASCO94856 1347 aa10.67□□□□□ -0.7
VPS53-206ENST00000570359 INO80B-WBP1J3KQ70 363 aa10.66□□□□□ -0.7
VPS53-206ENST00000570359 EPHB4P54760 987 aa10.66□□□□□ -0.7
VPS53-206ENST00000570359 ORC1Q13415 861 aa10.66□□□□□ -0.7
VPS53-206ENST00000570359 WDR44Q5JSH3 913 aa10.66□□□□□ -0.7
VPS53-206ENST00000570359 ZFYVE27Q5T4F4 411 aa10.66□□□□□ -0.7
VPS53-206ENST00000570359 C12orf56Q8IXR9 622 aa10.66□□□□□ -0.7
VPS53-206ENST00000570359 DHX37Q8IY37 1157 aaKnown RBP10.66□□□□□ -0.7
VPS53-206ENST00000570359 SAMD3Q8N6K7 520 aa10.66□□□□□ -0.7
VPS53-206ENST00000570359 CEP120Q8N960 986 aa10.66□□□□□ -0.7
VPS53-206ENST00000570359 ZNF564Q8TBZ8 553 aaPredicted RBP10.66□□□□□ -0.7
VPS53-206ENST00000570359 SPIRE2Q8WWL2 714 aa10.66□□□□□ -0.7
VPS53-206ENST00000570359 UPF1Q92900 1129 aaKnown RBP eCLIP10.66□□□□□ -0.7
VPS53-206ENST00000570359 SENP7Q9BQF6 1050 aa10.66□□□□□ -0.7
VPS53-206ENST00000570359 SYT11Q9BT88 431 aa10.66□□□□□ -0.7
VPS53-206ENST00000570359 INO80BQ9C086 356 aaPredicted RBP10.66□□□□□ -0.7
VPS53-206ENST00000570359 NOCTQ9UK39 431 aaKnown RBP10.66□□□□□ -0.7
VPS53-206ENST00000570359 USTQ9Y2C2 406 aa10.66□□□□□ -0.7
VPS53-206ENST00000570359 PCDHB4Q9Y5E5 795 aa10.66□□□□□ -0.7
VPS53-206ENST00000570359 PPP2R3BQ9Y5P8 575 aa10.66□□□□□ -0.7
VPS53-206ENST00000570359 ATP2A1O14983 1001 aa10.66□□□□□ -0.7
VPS53-206ENST00000570359 B4GALT5O43286 388 aa10.66□□□□□ -0.7
VPS53-206ENST00000570359 HSF2BPO75031 334 aa10.66□□□□□ -0.7
VPS53-206ENST00000570359 TUBBP07437 444 aa10.66□□□□□ -0.7
VPS53-206ENST00000570359 EPHX2P34913 555 aa10.66□□□□□ -0.7
VPS53-206ENST00000570359 CDR1P51861 262 aa10.66□□□□□ -0.7
VPS53-206ENST00000570359 GPC5P78333 572 aa10.66□□□□□ -0.7
VPS53-206ENST00000570359 MAP1SQ66K74 1059 aaPredicted RBP10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms