RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 ZBTB45Q96K62 511 aaPredicted RBP21.85■■□□□ 1.09
CLN3-230ENST00000568076 TXNRD2Q9NNW7 524 aa21.85■■□□□ 1.09
CLN3-230ENST00000568076 CHORDC1Q9UHD1 332 aaPredicted RBP21.85■■□□□ 1.09
CLN3-230ENST00000568076 KCNG1Q9UIX4 513 aa21.85■■□□□ 1.09
CLN3-230ENST00000568076 NFU1Q9UMS0 254 aa21.85■■□□□ 1.09
CLN3-230ENST00000568076 PIGRP01833 764 aa21.84■■□□□ 1.09
CLN3-230ENST00000568076 FAM153BP0C7A2 387 aa21.84■■□□□ 1.09
CLN3-230ENST00000568076 GZMAP12544 262 aa21.84■■□□□ 1.09
CLN3-230ENST00000568076 STRN3Q13033 797 aa21.84■■□□□ 1.09
CLN3-230ENST00000568076 PSMD6Q15008 389 aa21.84■■□□□ 1.09
CLN3-230ENST00000568076 FAM153CQ494X1 144 aa21.84■■□□□ 1.09
CLN3-230ENST00000568076 DEPTORQ8TB45 409 aa21.84■■□□□ 1.09
CLN3-230ENST00000568076 IFT81Q8WYA0 676 aa21.84■■□□□ 1.09
CLN3-230ENST00000568076 DDX1Q92499 740 aaKnown RBP21.84■■□□□ 1.09
CLN3-230ENST00000568076 FGD4Q96M96 766 aa21.84■■□□□ 1.09
CLN3-230ENST00000568076 CTTNBP2NLQ9P2B4 639 aa21.84■■□□□ 1.09
CLN3-230ENST00000568076 FAM153AQ9UHL3 310 aa21.84■■□□□ 1.09
CLN3-230ENST00000568076 SIP14410 1827 aa21.84■■□□□ 1.09
CLN3-230ENST00000568076 SOCS7O14512 581 aa21.83■■□□□ 1.09
CLN3-230ENST00000568076 RNF40O75150 1001 aa21.83■■□□□ 1.09
CLN3-230ENST00000568076 GGPS1O95749 300 aa21.83■■□□□ 1.09
CLN3-230ENST00000568076 ACOT2P49753 483 aa21.83■■□□□ 1.09
CLN3-230ENST00000568076 STAT5BP51692 787 aa21.83■■□□□ 1.09
CLN3-230ENST00000568076 NEDD9Q14511 834 aa21.83■■□□□ 1.09
CLN3-230ENST00000568076 EXOC4Q96A65 974 aa21.83■■□□□ 1.09
CLN3-230ENST00000568076 TTC7AQ9ULT0 858 aaPredicted RBP21.83■■□□□ 1.09
CLN3-230ENST00000568076 ALG6Q9Y672 507 aa21.83■■□□□ 1.09
CLN3-230ENST00000568076 PTPRJQ12913 1337 aa21.83■■□□□ 1.09
CLN3-230ENST00000568076 SPDYE5A6NIY4 337 aa21.83■■□□□ 1.08
CLN3-230ENST00000568076 K7ERI5 159 aa21.83■■□□□ 1.08
CLN3-230ENST00000568076 KRIT1O00522 736 aa21.83■■□□□ 1.08
CLN3-230ENST00000568076 CXCL11O14625 94 aa21.83■■□□□ 1.08
CLN3-230ENST00000568076 ATMINO43313 823 aaPredicted RBP21.83■■□□□ 1.08
CLN3-230ENST00000568076 ARIH2O95376 493 aa21.83■■□□□ 1.08
CLN3-230ENST00000568076 PGK2P07205 417 aa21.83■■□□□ 1.08
CLN3-230ENST00000568076 TCF7P36402 384 aaPredicted RBP21.83■■□□□ 1.08
CLN3-230ENST00000568076 CDR2Q01850 454 aa21.83■■□□□ 1.08
CLN3-230ENST00000568076 DRP2Q13474 957 aa21.83■■□□□ 1.08
CLN3-230ENST00000568076 ANKRD13AQ8IZ07 590 aa21.83■■□□□ 1.08
CLN3-230ENST00000568076 AFAP1L1Q8TED9 768 aa21.83■■□□□ 1.08
CLN3-230ENST00000568076 ALG3Q92685 438 aa21.83■■□□□ 1.08
CLN3-230ENST00000568076 TARS2Q9BW92 718 aaKnown RBP21.83■■□□□ 1.08
CLN3-230ENST00000568076 DDX47Q9H0S4 455 aaKnown RBP21.83■■□□□ 1.08
CLN3-230ENST00000568076 KIAA1586Q9HCI6 787 aa21.83■■□□□ 1.08
CLN3-230ENST00000568076 AGO2Q9UKV8 859 aaKnown RBP21.83■■□□□ 1.08
CLN3-230ENST00000568076 GOLGA6BA6NDN3 693 aa21.82■■□□□ 1.08
CLN3-230ENST00000568076 SART1O43290 800 aaKnown RBP21.82■■□□□ 1.08
CLN3-230ENST00000568076 GRIN3BO60391 1043 aa21.82■■□□□ 1.08
CLN3-230ENST00000568076 RFC5P40937 340 aa21.82■■□□□ 1.08
CLN3-230ENST00000568076 ERVK-9P63128 1117 aa21.82■■□□□ 1.08
CLN3-230ENST00000568076 GCNT1Q02742 428 aa21.82■■□□□ 1.08
CLN3-230ENST00000568076 PAK2Q13177 524 aa21.82■■□□□ 1.08
CLN3-230ENST00000568076 MOGSQ13724 837 aa21.82■■□□□ 1.08
CLN3-230ENST00000568076 Q3C1V9 767 aa21.82■■□□□ 1.08
CLN3-230ENST00000568076 ZBTB41Q5SVQ8 909 aa21.82■■□□□ 1.08
CLN3-230ENST00000568076 C11orf63Q6NUN7 778 aa21.82■■□□□ 1.08
CLN3-230ENST00000568076 METTL7BQ6UX53 244 aa21.82■■□□□ 1.08
CLN3-230ENST00000568076 SEPT1Q8WYJ6 367 aa21.82■■□□□ 1.08
CLN3-230ENST00000568076 CDCA5Q96FF9 252 aa21.82■■□□□ 1.08
CLN3-230ENST00000568076 AGTPBP1Q9UPW5 1226 aa21.82■■□□□ 1.08
CLN3-230ENST00000568076 KCNH4Q9UQ05 1017 aa21.82■■□□□ 1.08
CLN3-230ENST00000568076 BHMG1C9JSJ3 638 aaPredicted RBP21.81■■□□□ 1.08
CLN3-230ENST00000568076 ZC3H11AO75152 810 aaKnown RBP eCLIP21.81■■□□□ 1.08
CLN3-230ENST00000568076 CALCAP01258 141 aa21.81■■□□□ 1.08
CLN3-230ENST00000568076 C4BPAP04003 597 aaKnown RBP21.81■■□□□ 1.08
CLN3-230ENST00000568076 TGFB3P10600 412 aa21.81■■□□□ 1.08
CLN3-230ENST00000568076 PDE6CP51160 858 aa21.81■■□□□ 1.08
CLN3-230ENST00000568076 NNTQ13423 1086 aa21.81■■□□□ 1.08
CLN3-230ENST00000568076 CAPSQ13938 189 aa21.81■■□□□ 1.08
CLN3-230ENST00000568076 ZACNQ401N2 412 aa21.81■■□□□ 1.08
CLN3-230ENST00000568076 TDRD10Q5VZ19 366 aaKnown RBP21.81■■□□□ 1.08
CLN3-230ENST00000568076 CARD9Q9H257 536 aa21.81■■□□□ 1.08
CLN3-230ENST00000568076 NRBP2Q9NSY0 501 aa21.81■■□□□ 1.08
CLN3-230ENST00000568076 RBPJLQ9UBG7 517 aa21.81■■□□□ 1.08
CLN3-230ENST00000568076 ZHX1Q9UKY1 873 aaPredicted RBP21.81■■□□□ 1.08
CLN3-230ENST00000568076 NR2E1Q9Y466 385 aa21.81■■□□□ 1.08
CLN3-230ENST00000568076 CCDC188H7C350 402 aa21.81■■□□□ 1.08
CLN3-230ENST00000568076 FGGP02679 453 aa21.81■■□□□ 1.08
CLN3-230ENST00000568076 KCTD19Q17RG1 926 aaPredicted RBP21.81■■□□□ 1.08
CLN3-230ENST00000568076 UPF1Q92900 1129 aaKnown RBP eCLIP21.81■■□□□ 1.08
CLN3-230ENST00000568076 MTA2O94776 668 aa21.8■■□□□ 1.08
CLN3-230ENST00000568076 FAM160B1Q5W0V3 765 aa21.8■■□□□ 1.08
CLN3-230ENST00000568076 RNPC3Q96LT9 517 aaKnown RBP21.8■■□□□ 1.08
CLN3-230ENST00000568076 FNBP1Q96RU3 617 aa21.8■■□□□ 1.08
CLN3-230ENST00000568076 SPON1Q9HCB6 807 aa21.8■■□□□ 1.08
CLN3-230ENST00000568076 PSD3Q9NYI0 1048 aa21.8■■□□□ 1.08
CLN3-230ENST00000568076 DIS3Q9Y2L1 958 aaKnown RBP21.8■■□□□ 1.08
CLN3-230ENST00000568076 ADGRA2Q96PE1 1338 aa21.8■■□□□ 1.08
CLN3-230ENST00000568076 A0A0B4J269 797 aa21.79■■□□□ 1.08
CLN3-230ENST00000568076 KIAA0391O15091 583 aaKnown RBP21.79■■□□□ 1.08
CLN3-230ENST00000568076 MAFO75444 373 aaPredicted RBP21.79■■□□□ 1.08
CLN3-230ENST00000568076 VNN1O95497 513 aa21.79■■□□□ 1.08
CLN3-230ENST00000568076 SLC25A27O95847 323 aa21.79■■□□□ 1.08
CLN3-230ENST00000568076 HLA-DRAP01903 254 aa21.79■■□□□ 1.08
CLN3-230ENST00000568076 CYP1A2P05177 515 aa21.79■■□□□ 1.08
CLN3-230ENST00000568076 TNNI1P19237 187 aa21.79■■□□□ 1.08
CLN3-230ENST00000568076 SCP2P22307 547 aa21.79■■□□□ 1.08
CLN3-230ENST00000568076 ECHS1P30084 290 aa21.79■■□□□ 1.08
CLN3-230ENST00000568076 ZNF211Q13398 564 aaPredicted RBP21.79■■□□□ 1.08
CLN3-230ENST00000568076 ENOSF1Q7L5Y1 443 aa21.79■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms