RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 ATAT1Q5SQI0 421 aa22.8■■□□□ 1.24
CLN3-219ENST00000565778 CALML4Q96GE6 196 aa22.8■■□□□ 1.24
CLN3-219ENST00000565778 FBXL18Q96ME1 805 aa22.8■■□□□ 1.24
CLN3-219ENST00000565778 RIPOR3Q96MK2 946 aa22.8■■□□□ 1.24
CLN3-219ENST00000565778 KCNG1Q9UIX4 513 aa22.8■■□□□ 1.24
CLN3-219ENST00000565778 CDH22Q9UJ99 828 aa22.8■■□□□ 1.24
CLN3-219ENST00000565778 ADAM28Q9UKQ2 775 aa22.8■■□□□ 1.24
CLN3-219ENST00000565778 TNFSF13BQ9Y275 285 aa22.8■■□□□ 1.24
CLN3-219ENST00000565778 SLC16A4O15374 487 aa22.79■■□□□ 1.24
CLN3-219ENST00000565778 WEE2P0C1S8 567 aa22.79■■□□□ 1.24
CLN3-219ENST00000565778 SP100P23497 879 aaPredicted RBP22.79■■□□□ 1.24
CLN3-219ENST00000565778 MTHFRP42898 656 aa22.79■■□□□ 1.24
CLN3-219ENST00000565778 CLCN4P51793 760 aa22.79■■□□□ 1.24
CLN3-219ENST00000565778 MAPK7Q13164 816 aa22.79■■□□□ 1.24
CLN3-219ENST00000565778 KIAA0319Q5VV43 1072 aa22.79■■□□□ 1.24
CLN3-219ENST00000565778 FUT10Q6P4F1 479 aa22.79■■□□□ 1.24
CLN3-219ENST00000565778 NECTIN4Q96NY8 510 aa22.79■■□□□ 1.24
CLN3-219ENST00000565778 ACO2Q99798 780 aaKnown RBP22.79■■□□□ 1.24
CLN3-219ENST00000565778 TCHPQ9BT92 498 aa22.79■■□□□ 1.24
CLN3-219ENST00000565778 MRPL4Q9BYD3 311 aaKnown RBP22.79■■□□□ 1.24
CLN3-219ENST00000565778 GPR62Q9BZJ7 368 aa22.79■■□□□ 1.24
CLN3-219ENST00000565778 TSHZ2Q9NRE2 1034 aa22.79■■□□□ 1.24
CLN3-219ENST00000565778 CACNG4Q9UBN1 327 aa22.79■■□□□ 1.24
CLN3-219ENST00000565778 CASTOR2A6NHX0 329 aa22.78■■□□□ 1.24
CLN3-219ENST00000565778 PRR33A8MZF0 331 aa22.78■■□□□ 1.24
CLN3-219ENST00000565778 PTGESO14684 152 aa22.78■■□□□ 1.24
CLN3-219ENST00000565778 EFEMP2O95967 443 aa22.78■■□□□ 1.24
CLN3-219ENST00000565778 ADH1AP07327 375 aa22.78■■□□□ 1.24
CLN3-219ENST00000565778 SMTNP53814 917 aa22.78■■□□□ 1.24
CLN3-219ENST00000565778 SLC12A3P55017 1021 aa22.78■■□□□ 1.24
CLN3-219ENST00000565778 HSP90AA2PQ14568 343 aaPredicted RBP22.78■■□□□ 1.24
CLN3-219ENST00000565778 USP41Q3LFD5 358 aa22.78■■□□□ 1.24
CLN3-219ENST00000565778 RNF168Q8IYW5 571 aaPredicted RBP22.78■■□□□ 1.24
CLN3-219ENST00000565778 PAAF1Q9BRP4 392 aa22.78■■□□□ 1.24
CLN3-219ENST00000565778 NTPCRQ9BSD7 190 aaKnown RBP22.78■■□□□ 1.24
CLN3-219ENST00000565778 TARS2Q9BW92 718 aaKnown RBP22.78■■□□□ 1.24
CLN3-219ENST00000565778 CXCL16Q9H2A7 254 aa22.78■■□□□ 1.24
CLN3-219ENST00000565778 CHST7Q9NS84 486 aa22.78■■□□□ 1.24
CLN3-219ENST00000565778 ARHGAP28Q9P2N2 729 aa22.78■■□□□ 1.24
CLN3-219ENST00000565778 PHLPP2Q6ZVD8 1323 aa22.78■■□□□ 1.24
CLN3-219ENST00000565778 TEX28O15482 410 aa22.77■■□□□ 1.24
CLN3-219ENST00000565778 PLS3P13797 630 aa22.77■■□□□ 1.24
CLN3-219ENST00000565778 LONP1P36776 959 aaKnown RBP22.77■■□□□ 1.24
CLN3-219ENST00000565778 DSG1Q02413 1049 aa22.77■■□□□ 1.24
CLN3-219ENST00000565778 STRN3Q13033 797 aa22.77■■□□□ 1.24
CLN3-219ENST00000565778 DHX8Q14562 1220 aaKnown RBP22.77■■□□□ 1.24
CLN3-219ENST00000565778 TMEM119Q4V9L6 283 aa22.77■■□□□ 1.24
CLN3-219ENST00000565778 TMC5Q6UXY8 1006 aa22.77■■□□□ 1.24
CLN3-219ENST00000565778 ZBTB33Q86T24 672 aa22.77■■□□□ 1.24
CLN3-219ENST00000565778 RASSF8Q8NHQ8 419 aa22.77■■□□□ 1.24
CLN3-219ENST00000565778 B3GALT6Q96L58 329 aa22.77■■□□□ 1.24
CLN3-219ENST00000565778 POMKQ9H5K3 350 aa22.77■■□□□ 1.24
CLN3-219ENST00000565778 FOXD4L1Q9NU39 408 aa22.77■■□□□ 1.24
CLN3-219ENST00000565778 KCND2Q9NZV8 630 aa22.77■■□□□ 1.24
CLN3-219ENST00000565778 NR2E1Q9Y466 385 aa22.77■■□□□ 1.24
CLN3-219ENST00000565778 NPHP3-ACAD11A0A0J9YXS1 232 aa22.76■■□□□ 1.23
CLN3-219ENST00000565778 SLC26A4O43511 780 aa22.76■■□□□ 1.23
CLN3-219ENST00000565778 SYT1P21579 422 aa22.76■■□□□ 1.23
CLN3-219ENST00000565778 YARSP54577 528 aaKnown RBP22.76■■□□□ 1.23
CLN3-219ENST00000565778 OSTNP61366 133 aa22.76■■□□□ 1.23
CLN3-219ENST00000565778 TAS1R3Q7RTX0 852 aa22.76■■□□□ 1.23
CLN3-219ENST00000565778 HASPINQ8TF76 798 aa22.76■■□□□ 1.23
CLN3-219ENST00000565778 RIN2Q8WYP3 895 aaPredicted RBP22.76■■□□□ 1.23
CLN3-219ENST00000565778 EDAQ92838 391 aa22.76■■□□□ 1.23
CLN3-219ENST00000565778 CCDC94Q9BW85 323 aaPredicted RBP22.76■■□□□ 1.23
CLN3-219ENST00000565778 RXFP1Q9HBX9 757 aa22.76■■□□□ 1.23
CLN3-219ENST00000565778 CACNB1Q02641 598 aaPredicted RBP22.75■■□□□ 1.23
CLN3-219ENST00000565778 GRIN1Q05586 938 aa22.75■■□□□ 1.23
CLN3-219ENST00000565778 ZNF568Q3ZCX4 644 aa22.75■■□□□ 1.23
CLN3-219ENST00000565778 ARSHQ5FYA8 562 aa22.75■■□□□ 1.23
CLN3-219ENST00000565778 CEP57Q86XR8 500 aa22.75■■□□□ 1.23
CLN3-219ENST00000565778 PALB2Q86YC2 1186 aa22.75■■□□□ 1.23
CLN3-219ENST00000565778 SPIRE2Q8WWL2 714 aa22.75■■□□□ 1.23
CLN3-219ENST00000565778 INTS4Q96HW7 963 aaKnown RBP22.75■■□□□ 1.23
CLN3-219ENST00000565778 CDT1Q9H211 546 aa22.75■■□□□ 1.23
CLN3-219ENST00000565778 SFXN1Q9H9B4 322 aa22.75■■□□□ 1.23
CLN3-219ENST00000565778 PTPRHQ9HD43 1115 aa22.75■■□□□ 1.23
CLN3-219ENST00000565778 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP22.75■■□□□ 1.23
CLN3-219ENST00000565778 LARSQ9P2J5 1176 aaKnown RBP22.75■■□□□ 1.23
CLN3-219ENST00000565778 DPP7Q9UHL4 492 aa22.75■■□□□ 1.23
CLN3-219ENST00000565778 CLIC4Q9Y696 253 aa22.75■■□□□ 1.23
CLN3-219ENST00000565778 SF3B1O75533 1304 aaKnown RBP eCLIP22.75■■□□□ 1.233e-9■■■■■ 164.7
CLN3-219ENST00000565778 TDRD15B5MCY1 1934 aaKnown RBP22.74■■□□□ 1.23
CLN3-219ENST00000565778 GLUD1P00367 558 aa22.74■■□□□ 1.23
CLN3-219ENST00000565778 MYBP10242 640 aa22.74■■□□□ 1.23
CLN3-219ENST00000565778 GRM5P41594 1212 aa22.74■■□□□ 1.23
CLN3-219ENST00000565778 GLRA4Q5JXX5 417 aa22.74■■□□□ 1.23
CLN3-219ENST00000565778 ELMSAN1Q6PJG2 1045 aa22.74■■□□□ 1.23
CLN3-219ENST00000565778 GLYCTKQ8IVS8 523 aa22.74■■□□□ 1.23
CLN3-219ENST00000565778 CEP120Q8N960 986 aa22.74■■□□□ 1.23
CLN3-219ENST00000565778 TOPORSQ9NS56 1045 aaPredicted RBP22.74■■□□□ 1.23
CLN3-219ENST00000565778 HCN4Q9Y3Q4 1203 aa22.74■■□□□ 1.23
CLN3-219ENST00000565778 KIF4AO95239 1232 aa22.73■■□□□ 1.23
CLN3-219ENST00000565778 SPATA31D3P0C874 917 aa22.73■■□□□ 1.23
CLN3-219ENST00000565778 MCF2P10911 925 aa22.73■■□□□ 1.23
CLN3-219ENST00000565778 KARSQ15046 597 aaKnown RBP22.73■■□□□ 1.23
CLN3-219ENST00000565778 NAB2Q15742 525 aa22.73■■□□□ 1.23
CLN3-219ENST00000565778 FAM171A1Q5VUB5 890 aa22.73■■□□□ 1.23
CLN3-219ENST00000565778 SPATA31D4Q6ZUB0 917 aa22.73■■□□□ 1.23
CLN3-219ENST00000565778 GPR149Q86SP6 731 aa22.73■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms