RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 ADAM15Q13444 863 aa14.68□□□□□ -0.06
CLK3-213ENST00000563842 DUSP6Q16828 381 aa14.68□□□□□ -0.06
CLK3-213ENST00000563842 FOXD4L6Q3SYB3 417 aaPredicted RBP14.68□□□□□ -0.06
CLK3-213ENST00000563842 FOXD4L3Q6VB84 417 aaPredicted RBP14.68□□□□□ -0.06
CLK3-213ENST00000563842 TAS1R3Q7RTX0 852 aa14.68□□□□□ -0.06
CLK3-213ENST00000563842 RBM23Q86U06 439 aaKnown RBP14.68□□□□□ -0.06
CLK3-213ENST00000563842 FAM178BQ8IXR5 827 aa14.68□□□□□ -0.06
CLK3-213ENST00000563842 VPS52Q8N1B4 723 aa14.68□□□□□ -0.06
CLK3-213ENST00000563842 BICD1Q96G01 975 aa14.68□□□□□ -0.06
CLK3-213ENST00000563842 CUEDC2Q9H467 287 aa14.68□□□□□ -0.06
CLK3-213ENST00000563842 PTPRHQ9HD43 1115 aa14.68□□□□□ -0.06
CLK3-213ENST00000563842 SEL1LQ9UBV2 794 aa14.68□□□□□ -0.06
CLK3-213ENST00000563842 SSX2IPQ9Y2D8 614 aa14.68□□□□□ -0.06
CLK3-213ENST00000563842 USP20Q9Y2K6 914 aa14.68□□□□□ -0.06
CLK3-213ENST00000563842 MUC3AQ02505 3323 aa14.68□□□□□ -0.06
CLK3-213ENST00000563842 CLDN3O15551 220 aa14.67□□□□□ -0.06
CLK3-213ENST00000563842 BRD1O95696 1058 aa14.67□□□□□ -0.06
CLK3-213ENST00000563842 CXCL14O95715 111 aa14.67□□□□□ -0.06
CLK3-213ENST00000563842 CTSAP10619 480 aa14.67□□□□□ -0.06
CLK3-213ENST00000563842 BMP1P13497 986 aa14.67□□□□□ -0.06
CLK3-213ENST00000563842 GAP43P17677 238 aa14.67□□□□□ -0.06
CLK3-213ENST00000563842 PROZP22891 400 aa14.67□□□□□ -0.06
CLK3-213ENST00000563842 CA8P35219 290 aa14.67□□□□□ -0.06
CLK3-213ENST00000563842 ME1P48163 572 aa14.67□□□□□ -0.06
CLK3-213ENST00000563842 AMPD3Q01432 767 aa14.67□□□□□ -0.06
CLK3-213ENST00000563842 DNM1Q05193 864 aaKnown RBP14.67□□□□□ -0.06
CLK3-213ENST00000563842 TUSC3Q13454 348 aa14.67□□□□□ -0.06
CLK3-213ENST00000563842 PKP1Q13835 747 aa14.67□□□□□ -0.06
CLK3-213ENST00000563842 KYAT1Q16773 422 aa14.67□□□□□ -0.06
CLK3-213ENST00000563842 ADGRD2Q7Z7M1 963 aa14.67□□□□□ -0.06
CLK3-213ENST00000563842 MRPL43Q8N983 215 aaKnown RBP14.67□□□□□ -0.06
CLK3-213ENST00000563842 GSTCDQ8NEC7 633 aa14.67□□□□□ -0.06
CLK3-213ENST00000563842 DDX12PQ92771 950 aa14.67□□□□□ -0.06
CLK3-213ENST00000563842 PYM1Q9BRP8 204 aaKnown RBP14.67□□□□□ -0.06
CLK3-213ENST00000563842 PANK2Q9BZ23 570 aa14.67□□□□□ -0.06
CLK3-213ENST00000563842 CDT1Q9H211 546 aa14.67□□□□□ -0.06
CLK3-213ENST00000563842 FAM13BQ9NYF5 915 aa14.67□□□□□ -0.06
CLK3-213ENST00000563842 GDAQ9Y2T3 454 aa14.67□□□□□ -0.06
CLK3-213ENST00000563842 PRG3Q9Y2Y8 225 aaPredicted RBP14.67□□□□□ -0.06
CLK3-213ENST00000563842 IRAK3Q9Y616 596 aa14.67□□□□□ -0.06
CLK3-213ENST00000563842 MTCL1Q9Y4B5 1905 aaKnown RBP14.66□□□□□ -0.06
CLK3-213ENST00000563842 C2orf71A6NGG8 1288 aa14.66□□□□□ -0.06
CLK3-213ENST00000563842 MATR3P43243 847 aaKnown RBP eCLIP14.66□□□□□ -0.06
CLK3-213ENST00000563842 LIG4P49917 911 aa14.66□□□□□ -0.06
CLK3-213ENST00000563842 KCNQ1P51787 676 aa14.66□□□□□ -0.06
CLK3-213ENST00000563842 KRT85P78386 507 aa14.66□□□□□ -0.06
CLK3-213ENST00000563842 NOLC1Q14978 699 aaKnown RBP eCLIP14.66□□□□□ -0.06
CLK3-213ENST00000563842 DYMQ7RTS9 669 aa14.66□□□□□ -0.06
CLK3-213ENST00000563842 ZBTB33Q86T24 672 aa14.66□□□□□ -0.06
CLK3-213ENST00000563842 TMEM173Q86WV6 379 aaPredicted RBP14.66□□□□□ -0.06
CLK3-213ENST00000563842 PDILTQ8N807 584 aa14.66□□□□□ -0.06
CLK3-213ENST00000563842 IQUBQ8NA54 791 aa14.66□□□□□ -0.06
CLK3-213ENST00000563842 ADAMTS19Q8TE59 1207 aa14.66□□□□□ -0.06
CLK3-213ENST00000563842 ACAP3Q96P50 834 aa14.66□□□□□ -0.06
CLK3-213ENST00000563842 ZBP1Q9H171 429 aa14.66□□□□□ -0.06
CLK3-213ENST00000563842 TNMDQ9H2S6 317 aa14.66□□□□□ -0.06
CLK3-213ENST00000563842 ST6GALNAC4Q9H4F1 302 aa14.66□□□□□ -0.06
CLK3-213ENST00000563842 MAGEF1Q9HAY2 307 aa14.66□□□□□ -0.06
CLK3-213ENST00000563842 RCOR1Q9UKL0 485 aa14.66□□□□□ -0.06
CLK3-213ENST00000563842 TBX20Q9UMR3 447 aa14.66□□□□□ -0.06
CLK3-213ENST00000563842 PCDHGC5Q9Y5F6 944 aa14.66□□□□□ -0.06
CLK3-213ENST00000563842 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP14.65□□□□□ -0.06
CLK3-213ENST00000563842 MYMKA6NI61 221 aa14.65□□□□□ -0.06
CLK3-213ENST00000563842 HIDE1A8MVS5 230 aa14.65□□□□□ -0.06
CLK3-213ENST00000563842 H3BQ06 376 aaPredicted RBP14.65□□□□□ -0.06
CLK3-213ENST00000563842 HNRNPDLO14979 420 aaKnown RBP14.65□□□□□ -0.06
CLK3-213ENST00000563842 PER2O15055 1255 aa14.65□□□□□ -0.06
CLK3-213ENST00000563842 B4GALT3O60512 393 aa14.65□□□□□ -0.06
CLK3-213ENST00000563842 TADA2AO75478 443 aa14.65□□□□□ -0.06
CLK3-213ENST00000563842 PIGRP01833 764 aa14.65□□□□□ -0.06
CLK3-213ENST00000563842 SOD2P04179 222 aa14.65□□□□□ -0.06
CLK3-213ENST00000563842 GTF2F1P35269 517 aaKnown RBP eCLIP14.65□□□□□ -0.06
CLK3-213ENST00000563842 LTBRP36941 435 aa14.65□□□□□ -0.06
CLK3-213ENST00000563842 GTF2BQ00403 316 aa14.65□□□□□ -0.06
CLK3-213ENST00000563842 MCL1Q07820 350 aa14.65□□□□□ -0.06
CLK3-213ENST00000563842 PTCRAQ6ISU1 281 aaPredicted RBP14.65□□□□□ -0.06
CLK3-213ENST00000563842 PPFIBP1Q86W92 1011 aa14.65□□□□□ -0.06
CLK3-213ENST00000563842 GADD45GIP1Q8TAE8 222 aaPredicted RBP14.65□□□□□ -0.06
CLK3-213ENST00000563842 HVCN1Q96D96 273 aa14.65□□□□□ -0.06
CLK3-213ENST00000563842 UROC1Q96N76 676 aa14.65□□□□□ -0.06
CLK3-213ENST00000563842 UHRF1Q96T88 793 aaPredicted RBP14.65□□□□□ -0.06
CLK3-213ENST00000563842 EMILIN2Q9BXX0 1053 aa14.65□□□□□ -0.06
CLK3-213ENST00000563842 MRPL17Q9NRX2 175 aaKnown RBP14.65□□□□□ -0.06
CLK3-213ENST00000563842 SLC38A7Q9NVC3 462 aa14.65□□□□□ -0.06
CLK3-213ENST00000563842 ANKFY1Q9P2R3 1169 aa14.65□□□□□ -0.06
CLK3-213ENST00000563842 CD207Q9UJ71 328 aa14.65□□□□□ -0.06
CLK3-213ENST00000563842 ADAM28Q9UKQ2 775 aa14.65□□□□□ -0.06
CLK3-213ENST00000563842 PCDHA7Q9UN72 937 aa14.65□□□□□ -0.06
CLK3-213ENST00000563842 A0A087X0B3 334 aa14.64□□□□□ -0.07
CLK3-213ENST00000563842 PTGESO14684 152 aa14.64□□□□□ -0.07
CLK3-213ENST00000563842 LINC01565O15544 149 aa14.64□□□□□ -0.07
CLK3-213ENST00000563842 URODP06132 367 aa14.64□□□□□ -0.07
CLK3-213ENST00000563842 HARSP12081 509 aaKnown RBP14.64□□□□□ -0.07
CLK3-213ENST00000563842 IDEP14735 1019 aa14.64□□□□□ -0.07
CLK3-213ENST00000563842 ALCAMQ13740 583 aa14.64□□□□□ -0.07
CLK3-213ENST00000563842 HSP90AA2PQ14568 343 aaPredicted RBP14.64□□□□□ -0.07
CLK3-213ENST00000563842 AXDND1Q5T1B0 1012 aaPredicted RBP14.64□□□□□ -0.07
CLK3-213ENST00000563842 KIAA1841Q6NSI8 718 aa14.64□□□□□ -0.07
CLK3-213ENST00000563842 SHC4Q6S5L8 630 aa14.64□□□□□ -0.07
CLK3-213ENST00000563842 TMEM184AQ6ZMB5 413 aa14.64□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms