RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 RARS2Q5T160 578 aaKnown RBP18.52■□□□□ 0.56
CLK3-210ENST00000563112 ELMSAN1Q6PJG2 1045 aa18.52■□□□□ 0.56
CLK3-210ENST00000563112 TAS1R1Q7RTX1 841 aa18.52■□□□□ 0.56
CLK3-210ENST00000563112 DAW1Q8N136 415 aa18.52■□□□□ 0.56
CLK3-210ENST00000563112 MRPL4Q9BYD3 311 aaKnown RBP18.52■□□□□ 0.56
CLK3-210ENST00000563112 C11orf16Q9NQ32 467 aa18.52■□□□□ 0.56
CLK3-210ENST00000563112 KCND2Q9NZV8 630 aa18.52■□□□□ 0.56
CLK3-210ENST00000563112 DPP7Q9UHL4 492 aa18.52■□□□□ 0.56
CLK3-210ENST00000563112 MUTYHQ9UIF7 546 aa18.52■□□□□ 0.56
CLK3-210ENST00000563112 ADAM28Q9UKQ2 775 aa18.52■□□□□ 0.56
CLK3-210ENST00000563112 NR2E1Q9Y466 385 aa18.52■□□□□ 0.56
CLK3-210ENST00000563112 SFI1A8K8P3 1242 aa18.51■□□□□ 0.55
CLK3-210ENST00000563112 PLA2G4BP0C869 781 aa18.51■□□□□ 0.55
CLK3-210ENST00000563112 LONP1P36776 959 aaKnown RBP18.51■□□□□ 0.55
CLK3-210ENST00000563112 CLCN4P51793 760 aa18.51■□□□□ 0.55
CLK3-210ENST00000563112 STRN3Q13033 797 aa18.51■□□□□ 0.55
CLK3-210ENST00000563112 MAPK7Q13164 816 aa18.51■□□□□ 0.55
CLK3-210ENST00000563112 HSP90AA2PQ14568 343 aaPredicted RBP18.51■□□□□ 0.55
CLK3-210ENST00000563112 SF3A1Q15459 793 aaKnown RBP18.51■□□□□ 0.55
CLK3-210ENST00000563112 KIAA0319Q5VV43 1072 aa18.51■□□□□ 0.55
CLK3-210ENST00000563112 FUT10Q6P4F1 479 aa18.51■□□□□ 0.55
CLK3-210ENST00000563112 RNF168Q8IYW5 571 aaPredicted RBP18.51■□□□□ 0.55
CLK3-210ENST00000563112 C12orf76Q8N812 135 aaPredicted RBP18.51■□□□□ 0.55
CLK3-210ENST00000563112 RASSF8Q8NHQ8 419 aa18.51■□□□□ 0.55
CLK3-210ENST00000563112 FBXL18Q96ME1 805 aa18.51■□□□□ 0.55
CLK3-210ENST00000563112 TCHPQ9BT92 498 aa18.51■□□□□ 0.55
CLK3-210ENST00000563112 PTGESO14684 152 aa18.5■□□□□ 0.55
CLK3-210ENST00000563112 SLC16A4O15374 487 aa18.5■□□□□ 0.55
CLK3-210ENST00000563112 EFEMP2O95967 443 aa18.5■□□□□ 0.55
CLK3-210ENST00000563112 PLS3P13797 630 aa18.5■□□□□ 0.55
CLK3-210ENST00000563112 YARSP54577 528 aaKnown RBP18.5■□□□□ 0.55
CLK3-210ENST00000563112 DSG1Q02413 1049 aa18.5■□□□□ 0.55
CLK3-210ENST00000563112 RAD51AP2Q09MP3 1159 aa18.5■□□□□ 0.55
CLK3-210ENST00000563112 TMEM119Q4V9L6 283 aa18.5■□□□□ 0.55
CLK3-210ENST00000563112 GPR65Q8IYL9 337 aa18.5■□□□□ 0.55
CLK3-210ENST00000563112 SPIRE2Q8WWL2 714 aa18.5■□□□□ 0.55
CLK3-210ENST00000563112 ACO2Q99798 780 aaKnown RBP18.5■□□□□ 0.55
CLK3-210ENST00000563112 NTPCRQ9BSD7 190 aaKnown RBP18.5■□□□□ 0.55
CLK3-210ENST00000563112 CCDC94Q9BW85 323 aaPredicted RBP18.5■□□□□ 0.55
CLK3-210ENST00000563112 SFXN1Q9H9B4 322 aa18.5■□□□□ 0.55
CLK3-210ENST00000563112 RXFP1Q9HBX9 757 aa18.5■□□□□ 0.55
CLK3-210ENST00000563112 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP18.5■□□□□ 0.55
CLK3-210ENST00000563112 CHST7Q9NS84 486 aa18.5■□□□□ 0.55
CLK3-210ENST00000563112 ARHGAP28Q9P2N2 729 aa18.5■□□□□ 0.55
CLK3-210ENST00000563112 HCN4Q9Y3Q4 1203 aa18.5■□□□□ 0.55
CLK3-210ENST00000563112 SF3B1O75533 1304 aaKnown RBP eCLIP18.49■□□□□ 0.55
CLK3-210ENST00000563112 CASTOR2A6NHX0 329 aa18.49■□□□□ 0.55
CLK3-210ENST00000563112 F8W810 466 aa18.49■□□□□ 0.55
CLK3-210ENST00000563112 TEX28O15482 410 aa18.49■□□□□ 0.55
CLK3-210ENST00000563112 SLC12A3P55017 1021 aa18.49■□□□□ 0.55
CLK3-210ENST00000563112 CREMQ03060 361 aa18.49■□□□□ 0.55
CLK3-210ENST00000563112 ZNF568Q3ZCX4 644 aa18.49■□□□□ 0.55
CLK3-210ENST00000563112 RABGGTAQ92696 567 aa18.49■□□□□ 0.55
CLK3-210ENST00000563112 INTS4Q96HW7 963 aaKnown RBP18.49■□□□□ 0.55
CLK3-210ENST00000563112 TARS2Q9BW92 718 aaKnown RBP18.49■□□□□ 0.55
CLK3-210ENST00000563112 GPR62Q9BZJ7 368 aa18.49■□□□□ 0.55
CLK3-210ENST00000563112 TSHZ2Q9NRE2 1034 aa18.49■□□□□ 0.55
CLK3-210ENST00000563112 TOPORSQ9NS56 1045 aaPredicted RBP18.49■□□□□ 0.55
CLK3-210ENST00000563112 LARSQ9P2J5 1176 aaKnown RBP18.49■□□□□ 0.55
CLK3-210ENST00000563112 MYH11P35749 1972 aa18.48■□□□□ 0.55
CLK3-210ENST00000563112 H0YCG3 227 aa18.48■□□□□ 0.55
CLK3-210ENST00000563112 GLUD1P00367 558 aa18.48■□□□□ 0.55
CLK3-210ENST00000563112 MCF2P10911 925 aa18.48■□□□□ 0.55
CLK3-210ENST00000563112 GRM5P41594 1212 aa18.48■□□□□ 0.55
CLK3-210ENST00000563112 ELAVL2Q12926 359 aaKnown RBP18.48■□□□□ 0.55
CLK3-210ENST00000563112 TMC5Q6UXY8 1006 aa18.48■□□□□ 0.55
CLK3-210ENST00000563112 ZBTB33Q86T24 672 aa18.48■□□□□ 0.55
CLK3-210ENST00000563112 RIN2Q8WYP3 895 aaPredicted RBP18.48■□□□□ 0.55
CLK3-210ENST00000563112 EDAQ92838 391 aa18.48■□□□□ 0.55
CLK3-210ENST00000563112 CDT1Q9H211 546 aa18.48■□□□□ 0.55
CLK3-210ENST00000563112 POMKQ9H5K3 350 aa18.48■□□□□ 0.55
CLK3-210ENST00000563112 K7ELQ4 463 aaPredicted RBP18.47■□□□□ 0.55
CLK3-210ENST00000563112 C1RP00736 705 aa18.47■□□□□ 0.55
CLK3-210ENST00000563112 KRT18P05783 430 aaKnown RBP18.47■□□□□ 0.55
CLK3-210ENST00000563112 WEE2P0C1S8 567 aa18.47■□□□□ 0.55
CLK3-210ENST00000563112 SYT1P21579 422 aa18.47■□□□□ 0.55
CLK3-210ENST00000563112 SP100P23497 879 aaPredicted RBP18.47■□□□□ 0.55
CLK3-210ENST00000563112 DHX8Q14562 1220 aaKnown RBP18.47■□□□□ 0.55
CLK3-210ENST00000563112 KANK3Q6NY19 840 aa18.47■□□□□ 0.55
CLK3-210ENST00000563112 MPZL3Q6UWV2 235 aa18.47■□□□□ 0.55
CLK3-210ENST00000563112 TAS1R3Q7RTX0 852 aa18.47■□□□□ 0.55
CLK3-210ENST00000563112 GPR149Q86SP6 731 aa18.47■□□□□ 0.55
CLK3-210ENST00000563112 GPBP1Q86WP2 473 aa18.47■□□□□ 0.55
CLK3-210ENST00000563112 B3GALT6Q96L58 329 aa18.47■□□□□ 0.55
CLK3-210ENST00000563112 UROC1Q96N76 676 aa18.47■□□□□ 0.55
CLK3-210ENST00000563112 PAAF1Q9BRP4 392 aa18.47■□□□□ 0.55
CLK3-210ENST00000563112 PTPRHQ9HD43 1115 aa18.47■□□□□ 0.55
CLK3-210ENST00000563112 FNIP2Q9P278 1114 aa18.47■□□□□ 0.55
CLK3-210ENST00000563112 RAPGEFL1Q9UHV5 662 aa18.47■□□□□ 0.55
CLK3-210ENST00000563112 CDH22Q9UJ99 828 aa18.47■□□□□ 0.55
CLK3-210ENST00000563112 ODF2LQ9ULJ1 636 aa18.47■□□□□ 0.55
CLK3-210ENST00000563112 OSTNP61366 133 aa18.46■□□□□ 0.55
CLK3-210ENST00000563112 ZXDAP98168 799 aa18.46■□□□□ 0.55
CLK3-210ENST00000563112 NAB2Q15742 525 aa18.46■□□□□ 0.55
CLK3-210ENST00000563112 GLRA4Q5JXX5 417 aa18.46■□□□□ 0.55
CLK3-210ENST00000563112 FAM171A1Q5VUB5 890 aa18.46■□□□□ 0.55
CLK3-210ENST00000563112 C15orf39Q6ZRI6 1047 aa18.46■□□□□ 0.55
CLK3-210ENST00000563112 CEP57Q86XR8 500 aa18.46■□□□□ 0.55
CLK3-210ENST00000563112 PALB2Q86YC2 1186 aa18.46■□□□□ 0.55
CLK3-210ENST00000563112 TMEM161BQ8NDZ6 487 aa18.46■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms