RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 TNFRSF1AP19438 455 aa4.42□□□□□ -1.7
VPS35-203ENST00000562420 C5AR1P21730 350 aa4.42□□□□□ -1.7
VPS35-203ENST00000562420 NEK2P51955 445 aa4.42□□□□□ -1.7
VPS35-203ENST00000562420 CCT2P78371 535 aaKnown RBP4.42□□□□□ -1.7
VPS35-203ENST00000562420 CRHR2Q13324 411 aa4.42□□□□□ -1.7
VPS35-203ENST00000562420 RRP1BQ14684 758 aaKnown RBP4.42□□□□□ -1.7
VPS35-203ENST00000562420 SEPT2Q15019 361 aa4.42□□□□□ -1.7
VPS35-203ENST00000562420 CLUL1Q15846 466 aa4.42□□□□□ -1.7
VPS35-203ENST00000562420 VPS72Q15906 364 aa4.42□□□□□ -1.7
VPS35-203ENST00000562420 PTPN21Q16825 1174 aa4.42□□□□□ -1.7
VPS35-203ENST00000562420 BMT2Q1RMZ1 405 aa4.42□□□□□ -1.7
VPS35-203ENST00000562420 EFCAB2Q5VUJ9 269 aa4.42□□□□□ -1.7
VPS35-203ENST00000562420 OTUD7BQ6GQQ9 843 aa4.42□□□□□ -1.7
VPS35-203ENST00000562420 Q6ZRM9 215 aa4.42□□□□□ -1.7
VPS35-203ENST00000562420 MIGA2Q7L4E1 593 aa4.42□□□□□ -1.7
VPS35-203ENST00000562420 DRC7Q8IY82 874 aa4.42□□□□□ -1.7
VPS35-203ENST00000562420 ELOA2Q8IYF1 753 aaPredicted RBP4.42□□□□□ -1.7
VPS35-203ENST00000562420 IL17DQ8TAD2 202 aa4.42□□□□□ -1.7
VPS35-203ENST00000562420 ATXN2LQ8WWM7 1075 aaKnown RBP4.42□□□□□ -1.7
VPS35-203ENST00000562420 CAMKK2Q96RR4 588 aa4.42□□□□□ -1.7
VPS35-203ENST00000562420 NUP88Q99567 741 aaPredicted RBP4.42□□□□□ -1.7
VPS35-203ENST00000562420 MNTQ99583 582 aa4.42□□□□□ -1.7
VPS35-203ENST00000562420 GPR87Q9BY21 358 aa4.42□□□□□ -1.7
VPS35-203ENST00000562420 PCGF6Q9BYE7 350 aa4.42□□□□□ -1.7
VPS35-203ENST00000562420 KCNH6Q9H252 994 aa4.42□□□□□ -1.7
VPS35-203ENST00000562420 DMRT3Q9NQL9 472 aa4.42□□□□□ -1.7
VPS35-203ENST00000562420 XDHP47989 1333 aa4.42□□□□□ -1.7
VPS35-203ENST00000562420 TBKBP1A7MCY6 615 aa4.41□□□□□ -1.7
VPS35-203ENST00000562420 GRXCR1A8MXD5 290 aa4.41□□□□□ -1.7
VPS35-203ENST00000562420 PRR5-ARHGAP8B1AHC4 643 aa4.41□□□□□ -1.7
VPS35-203ENST00000562420 XPOTO43592 962 aaKnown RBP4.41□□□□□ -1.7
VPS35-203ENST00000562420 PPFIA4O75335 1185 aa4.41□□□□□ -1.7
VPS35-203ENST00000562420 GSPT1P15170 499 aaKnown RBP4.41□□□□□ -1.7
VPS35-203ENST00000562420 VCAM1P19320 739 aa4.41□□□□□ -1.7
VPS35-203ENST00000562420 SLC6A9P48067 706 aa4.41□□□□□ -1.7
VPS35-203ENST00000562420 SCNN1GP51170 649 aa4.41□□□□□ -1.7
VPS35-203ENST00000562420 CNGB1Q14028 1251 aaPredicted RBP4.41□□□□□ -1.7
VPS35-203ENST00000562420 PCBP2Q15366 365 aaKnown RBP eCLIP4.41□□□□□ -1.7
VPS35-203ENST00000562420 FAM214AQ32MH5 1076 aa4.41□□□□□ -1.7
VPS35-203ENST00000562420 USP39Q53GS9 565 aaKnown RBP4.41□□□□□ -1.7
VPS35-203ENST00000562420 RRP12Q5JTH9 1297 aaKnown RBP4.41□□□□□ -1.7
VPS35-203ENST00000562420 PNMA8AQ86V59 439 aaPredicted RBP4.41□□□□□ -1.7
VPS35-203ENST00000562420 PQLC1Q8N2U9 271 aa4.41□□□□□ -1.7
VPS35-203ENST00000562420 ZFP28Q8NHY6 868 aa4.41□□□□□ -1.7
VPS35-203ENST00000562420 MDM1Q8TC05 714 aa4.41□□□□□ -1.7
VPS35-203ENST00000562420 SH3RF3Q8TEJ3 882 aaPredicted RBP4.41□□□□□ -1.7
VPS35-203ENST00000562420 CACTINQ8WUQ7 758 aaKnown RBP4.41□□□□□ -1.7
VPS35-203ENST00000562420 STAG1Q8WVM7 1258 aa4.41□□□□□ -1.7
VPS35-203ENST00000562420 HDAC10Q969S8 669 aa4.41□□□□□ -1.7
VPS35-203ENST00000562420 ZNF503Q96F45 646 aa4.41□□□□□ -1.7
VPS35-203ENST00000562420 CEP89Q96ST8 783 aa4.41□□□□□ -1.7
VPS35-203ENST00000562420 UHRF1Q96T88 793 aaPredicted RBP4.41□□□□□ -1.7
VPS35-203ENST00000562420 C7orf25Q9BPX7 421 aa4.41□□□□□ -1.7
VPS35-203ENST00000562420 CPPED1Q9BRF8 314 aaPredicted RBP4.41□□□□□ -1.7
VPS35-203ENST00000562420 CPEB1Q9BZB8 566 aaKnown RBP4.41□□□□□ -1.7
VPS35-203ENST00000562420 EPC1Q9H2F5 836 aa4.41□□□□□ -1.7
VPS35-203ENST00000562420 TMEM140Q9NV12 185 aa4.41□□□□□ -1.7
VPS35-203ENST00000562420 PARPBPQ9NWS1 579 aa4.41□□□□□ -1.7
VPS35-203ENST00000562420 CEP72Q9P209 647 aa4.41□□□□□ -1.7
VPS35-203ENST00000562420 HDAC5Q9UQL6 1122 aa4.41□□□□□ -1.7
VPS35-203ENST00000562420 SIK3Q9Y2K2 1263 aa4.41□□□□□ -1.7
VPS35-203ENST00000562420 ZMYM3Q14202 1370 aa4.4□□□□□ -1.7
VPS35-203ENST00000562420 CXorf49A8MYA2 514 aaPredicted RBP4.4□□□□□ -1.71
VPS35-203ENST00000562420 AKAP8O43823 692 aaKnown RBP4.4□□□□□ -1.71
VPS35-203ENST00000562420 ADSLP30566 484 aaPredicted RBP4.4□□□□□ -1.71
VPS35-203ENST00000562420 PER3P56645 1201 aa4.4□□□□□ -1.71
VPS35-203ENST00000562420 CLRN1P58418 232 aa4.4□□□□□ -1.71
VPS35-203ENST00000562420 ATP8B2P98198 1209 aa4.4□□□□□ -1.71
VPS35-203ENST00000562420 CDC42EP1Q00587 391 aa4.4□□□□□ -1.71
VPS35-203ENST00000562420 FOXE3Q13461 319 aa4.4□□□□□ -1.71
VPS35-203ENST00000562420 TOB2Q14106 344 aaPredicted RBP4.4□□□□□ -1.71
VPS35-203ENST00000562420 ACAP2Q15057 778 aa4.4□□□□□ -1.71
VPS35-203ENST00000562420 NOMO1Q15155 1222 aa4.4□□□□□ -1.71
VPS35-203ENST00000562420 MFSD14BQ5SR56 506 aa4.4□□□□□ -1.71
VPS35-203ENST00000562420 PPP4R3AQ6IN85 833 aa4.4□□□□□ -1.71
VPS35-203ENST00000562420 CRIP3Q6Q6R5 217 aa4.4□□□□□ -1.71
VPS35-203ENST00000562420 SEM1Q6ZVN7 128 aa4.4□□□□□ -1.71
VPS35-203ENST00000562420 ZBTB46Q86UZ6 589 aa4.4□□□□□ -1.71
VPS35-203ENST00000562420 C1orf210Q8IVY1 113 aa4.4□□□□□ -1.71
VPS35-203ENST00000562420 CMTR2Q8IYT2 770 aaKnown RBP4.4□□□□□ -1.71
VPS35-203ENST00000562420 MB21D1Q8N884 522 aa4.4□□□□□ -1.71
VPS35-203ENST00000562420 NRG4Q8WWG1 115 aa4.4□□□□□ -1.71
VPS35-203ENST00000562420 COA7Q96BR5 231 aa4.4□□□□□ -1.71
VPS35-203ENST00000562420 CEP95Q96GE4 821 aa4.4□□□□□ -1.71
VPS35-203ENST00000562420 DCLRE1CQ96SD1 692 aaKnown RBP4.4□□□□□ -1.71
VPS35-203ENST00000562420 SENP6Q9GZR1 1112 aaPredicted RBP4.4□□□□□ -1.71
VPS35-203ENST00000562420 CSRNP2Q9H175 543 aa4.4□□□□□ -1.71
VPS35-203ENST00000562420 NIPSNAP3AQ9UFN0 247 aaPredicted RBP4.4□□□□□ -1.71
VPS35-203ENST00000562420 DNM3Q9UQ16 869 aa4.4□□□□□ -1.71
VPS35-203ENST00000562420 IPPQ9Y573 584 aa4.4□□□□□ -1.71
VPS35-203ENST00000562420 CFAP20Q9Y6A4 193 aaKnown RBP4.4□□□□□ -1.71
VPS35-203ENST00000562420 HTRA2O43464 458 aaPredicted RBP4.39□□□□□ -1.71
VPS35-203ENST00000562420 GPR32O75388 356 aa4.39□□□□□ -1.71
VPS35-203ENST00000562420 SNUPNO95149 360 aaKnown RBP4.39□□□□□ -1.71
VPS35-203ENST00000562420 ZRANB2O95218 330 aaKnown RBP eCLIP4.39□□□□□ -1.71
VPS35-203ENST00000562420 RPLP2P05387 115 aaKnown RBP4.39□□□□□ -1.71
VPS35-203ENST00000562420 CCND1P24385 295 aa4.39□□□□□ -1.71
VPS35-203ENST00000562420 PTPN7P35236 360 aa4.39□□□□□ -1.71
VPS35-203ENST00000562420 EPHB1P54762 984 aa4.39□□□□□ -1.71
VPS35-203ENST00000562420 MTM1Q13496 603 aa4.39□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms