RNA–Protein interactions for RNA: ENST00000560970.5

TPM1-227, Transcript of tropomyosin 1, humanhuman

TSL 1 (best)

Gene TPM1, Length 1,039 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-227ENST00000560970 CCDC105Q8IYK2 499 aa11.88□□□□□ -0.51
TPM1-227ENST00000560970 CCDC43Q96MW1 224 aaKnown RBP11.88□□□□□ -0.51
TPM1-227ENST00000560970 GAD1Q99259 594 aa11.88□□□□□ -0.51
TPM1-227ENST00000560970 EIF2AQ9BY44 585 aaKnown RBP11.88□□□□□ -0.51
TPM1-227ENST00000560970 TRIM6Q9C030 488 aaPredicted RBP11.88□□□□□ -0.51
TPM1-227ENST00000560970 KCNK12Q9HB15 430 aa11.88□□□□□ -0.51
TPM1-227ENST00000560970 XPNPEP1Q9NQW7 623 aa11.88□□□□□ -0.51
TPM1-227ENST00000560970 IGSF9Q9P2J2 1179 aa11.88□□□□□ -0.51
TPM1-227ENST00000560970 FBXL21Q9UKT6 434 aa11.88□□□□□ -0.51
TPM1-227ENST00000560970 ZNF292O60281 2723 aa11.88□□□□□ -0.51
TPM1-227ENST00000560970 COL4A2P08572 1712 aa11.88□□□□□ -0.51
TPM1-227ENST00000560970 GVINP1Q7Z2Y8 2422 aa11.87□□□□□ -0.51
TPM1-227ENST00000560970 INO80B-WBP1J3KQ70 363 aa11.87□□□□□ -0.51
TPM1-227ENST00000560970 NR1I2O75469 434 aa11.87□□□□□ -0.51
TPM1-227ENST00000560970 EFEMP2O95967 443 aa11.87□□□□□ -0.51
TPM1-227ENST00000560970 PRPHP41219 470 aa11.87□□□□□ -0.51
TPM1-227ENST00000560970 PTENP60484 403 aa11.87□□□□□ -0.51
TPM1-227ENST00000560970 DSG1Q02413 1049 aa11.87□□□□□ -0.51
TPM1-227ENST00000560970 CREMQ03060 361 aa11.87□□□□□ -0.51
TPM1-227ENST00000560970 GRIK3Q13003 919 aa11.87□□□□□ -0.51
TPM1-227ENST00000560970 PKP1Q13835 747 aa11.87□□□□□ -0.51
TPM1-227ENST00000560970 CAPSQ13938 189 aa11.87□□□□□ -0.51
TPM1-227ENST00000560970 CATSPER3Q86XQ3 398 aa11.87□□□□□ -0.51
TPM1-227ENST00000560970 SIX5Q8N196 739 aa11.87□□□□□ -0.51
TPM1-227ENST00000560970 IGSF22Q8N9C0 903 aa11.87□□□□□ -0.51
TPM1-227ENST00000560970 PIGOQ8TEQ8 1089 aa11.87□□□□□ -0.51
TPM1-227ENST00000560970 NKD2Q969F2 451 aaPredicted RBP11.87□□□□□ -0.51
TPM1-227ENST00000560970 CPB2Q96IY4 423 aa11.87□□□□□ -0.51
TPM1-227ENST00000560970 ZFP42Q96MM3 310 aa11.87□□□□□ -0.51
TPM1-227ENST00000560970 POLR3CQ9BUI4 534 aaPredicted RBP11.87□□□□□ -0.51
TPM1-227ENST00000560970 NFKBIZQ9BYH8 718 aa11.87□□□□□ -0.51
TPM1-227ENST00000560970 CSRNP2Q9H175 543 aa11.87□□□□□ -0.51
TPM1-227ENST00000560970 NXF3Q9H4D5 531 aaKnown RBP11.87□□□□□ -0.51
TPM1-227ENST00000560970 WDR6Q9NNW5 1121 aaKnown RBP11.87□□□□□ -0.51
TPM1-227ENST00000560970 TUFT1Q9NNX1 390 aa11.87□□□□□ -0.51
TPM1-227ENST00000560970 NOTCH4Q99466 2003 aa11.87□□□□□ -0.51
TPM1-227ENST00000560970 LAD1O00515 517 aa11.86□□□□□ -0.51
TPM1-227ENST00000560970 N4BP1O75113 896 aaKnown RBP11.86□□□□□ -0.51
TPM1-227ENST00000560970 DGAT1O75907 488 aa11.86□□□□□ -0.51
TPM1-227ENST00000560970 PAPLNO95428 1278 aa11.86□□□□□ -0.51
TPM1-227ENST00000560970 ARF4P18085 180 aaPredicted RBP11.86□□□□□ -0.51
TPM1-227ENST00000560970 CDC25AP30304 524 aa11.86□□□□□ -0.51
TPM1-227ENST00000560970 GBP2P32456 591 aaPredicted RBP11.86□□□□□ -0.51
TPM1-227ENST00000560970 RARRES1P49788 294 aa11.86□□□□□ -0.51
TPM1-227ENST00000560970 GRIN1Q05586 938 aa11.86□□□□□ -0.51
TPM1-227ENST00000560970 NCBP1Q09161 790 aaKnown RBP11.86□□□□□ -0.51
TPM1-227ENST00000560970 SF3A1Q15459 793 aaKnown RBP11.86□□□□□ -0.51
TPM1-227ENST00000560970 AMHR2Q16671 573 aa11.86□□□□□ -0.51
TPM1-227ENST00000560970 FOXD4L5Q5VV16 416 aaPredicted RBP11.86□□□□□ -0.51
TPM1-227ENST00000560970 FUT10Q6P4F1 479 aa11.86□□□□□ -0.51
TPM1-227ENST00000560970 FRMD5Q7Z6J6 570 aa11.86□□□□□ -0.51
TPM1-227ENST00000560970 ASAP3Q8TDY4 903 aa11.86□□□□□ -0.51
TPM1-227ENST00000560970 FOXD4L4Q8WXT5 416 aaPredicted RBP11.86□□□□□ -0.51
TPM1-227ENST00000560970 SMG7Q92540 1137 aaKnown RBP11.86□□□□□ -0.51
TPM1-227ENST00000560970 RTP3Q9BQQ7 232 aa11.86□□□□□ -0.51
TPM1-227ENST00000560970 MMTAG2Q9BU76 263 aaKnown RBP11.86□□□□□ -0.51
TPM1-227ENST00000560970 APOL6Q9BWW8 343 aa11.86□□□□□ -0.51
TPM1-227ENST00000560970 RXFP1Q9HBX9 757 aa11.86□□□□□ -0.51
TPM1-227ENST00000560970 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP11.86□□□□□ -0.51
TPM1-227ENST00000560970 ZDHHC7Q9NXF8 308 aa11.86□□□□□ -0.51
TPM1-227ENST00000560970 EPS15L1Q9UBC2 864 aa11.86□□□□□ -0.51
TPM1-227ENST00000560970 GIT1Q9Y2X7 761 aa11.86□□□□□ -0.51
TPM1-227ENST00000560970 HES2Q9Y543 173 aa11.86□□□□□ -0.51
TPM1-227ENST00000560970 CLIC4Q9Y696 253 aa11.86□□□□□ -0.51
TPM1-227ENST00000560970 COL4A3Q01955 1670 aa11.86□□□□□ -0.51
TPM1-227ENST00000560970 FRYLO94915 3013 aa11.86□□□□□ -0.51
TPM1-227ENST00000560970 TICRRQ7Z2Z1 1910 aa11.86□□□□□ -0.51
TPM1-227ENST00000560970 CCDC195A0A1B0GUA6 201 aa11.85□□□□□ -0.51
TPM1-227ENST00000560970 VWA3AA6NCI4 1184 aa11.85□□□□□ -0.51
TPM1-227ENST00000560970 F8W810 466 aa11.85□□□□□ -0.51
TPM1-227ENST00000560970 NARSO43776 548 aaKnown RBP11.85□□□□□ -0.51
TPM1-227ENST00000560970 RFPL2O75678 378 aa11.85□□□□□ -0.51
TPM1-227ENST00000560970 C1RP00736 705 aa11.85□□□□□ -0.51
TPM1-227ENST00000560970 HSP90AA1P07900 732 aaKnown RBP11.85□□□□□ -0.51
TPM1-227ENST00000560970 NPR3P17342 541 aa11.85□□□□□ -0.51
TPM1-227ENST00000560970 RFX1P22670 979 aa11.85□□□□□ -0.51
TPM1-227ENST00000560970 RPA1P27694 616 aa11.85□□□□□ -0.51
TPM1-227ENST00000560970 CCT6AP40227 531 aaKnown RBP11.85□□□□□ -0.51
TPM1-227ENST00000560970 POU5F1BQ06416 359 aa11.85□□□□□ -0.51
TPM1-227ENST00000560970 PTPAQ15257 358 aa11.85□□□□□ -0.51
TPM1-227ENST00000560970 KIAA0319Q5VV43 1072 aa11.85□□□□□ -0.51
TPM1-227ENST00000560970 HAUS3Q68CZ6 603 aa11.85□□□□□ -0.51
TPM1-227ENST00000560970 SLC27A1Q6PCB7 646 aa11.85□□□□□ -0.51
TPM1-227ENST00000560970 DTHD1Q6ZMT9 781 aa11.85□□□□□ -0.51
TPM1-227ENST00000560970 GET4Q7L5D6 327 aaPredicted RBP11.85□□□□□ -0.51
TPM1-227ENST00000560970 GPR65Q8IYL9 337 aa11.85□□□□□ -0.51
TPM1-227ENST00000560970 SNX29Q8TEQ0 813 aa11.85□□□□□ -0.51
TPM1-227ENST00000560970 HDAC7Q8WUI4 952 aa11.85□□□□□ -0.51
TPM1-227ENST00000560970 ZNF707Q96C28 371 aaPredicted RBP11.85□□□□□ -0.51
TPM1-227ENST00000560970 COLEC11Q9BWP8 271 aa11.85□□□□□ -0.51
TPM1-227ENST00000560970 POLR3FQ9H1D9 316 aaPredicted RBP11.85□□□□□ -0.51
TPM1-227ENST00000560970 PLEKHA4Q9H4M7 779 aa11.85□□□□□ -0.51
TPM1-227ENST00000560970 ANKEF1Q9NU02 776 aa11.85□□□□□ -0.51
TPM1-227ENST00000560970 LRWD1Q9UFC0 647 aa11.85□□□□□ -0.51
TPM1-227ENST00000560970 ADAM28Q9UKQ2 775 aa11.85□□□□□ -0.51
TPM1-227ENST00000560970 TSC2P49815 1807 aa11.85□□□□□ -0.51
TPM1-227ENST00000560970 RIF1Q5UIP0 2472 aaKnown RBP11.85□□□□□ -0.51
TPM1-227ENST00000560970 CACNA1AO00555 2505 aa11.85□□□□□ -0.51
TPM1-227ENST00000560970 SF3B1O75533 1304 aaKnown RBP eCLIP11.85□□□□□ -0.519e-6■■■■■ 68.9
TPM1-227ENST00000560970 WDR87Q6ZQQ6 2873 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms