RNA–Protein interactions for RNA: ENST00000559961.1

SNX1-209, Transcript of sorting nexin 1, humanhuman

TSL 3

Gene SNX1, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-209ENST00000559961 TRAPPC3O43617 180 aa13.85□□□□□ -0.19
SNX1-209ENST00000559961 B4GALT3O60512 393 aa13.85□□□□□ -0.19
SNX1-209ENST00000559961 LILRB3O75022 631 aa13.85□□□□□ -0.19
SNX1-209ENST00000559961 U2AF2P26368 475 aaKnown RBP eCLIP13.85□□□□□ -0.194e-14■■■■□ 21.1
SNX1-209ENST00000559961 DMP1Q13316 513 aaPredicted RBP13.85□□□□□ -0.19
SNX1-209ENST00000559961 ZRSR1Q15695 479 aaKnown RBP13.85□□□□□ -0.19
SNX1-209ENST00000559961 RILPL1Q5EBL4 403 aa13.85□□□□□ -0.19
SNX1-209ENST00000559961 KIAA0319Q5VV43 1072 aa13.85□□□□□ -0.19
SNX1-209ENST00000559961 TAS1R1Q7RTX1 841 aa13.85□□□□□ -0.19
SNX1-209ENST00000559961 CEP57Q86XR8 500 aa13.85□□□□□ -0.19
SNX1-209ENST00000559961 TCHPQ9BT92 498 aa13.85□□□□□ -0.19
SNX1-209ENST00000559961 VN1R3Q9BXE9 311 aa13.85□□□□□ -0.19
SNX1-209ENST00000559961 RXFP1Q9HBX9 757 aa13.85□□□□□ -0.19
SNX1-209ENST00000559961 TOPORSQ9NS56 1045 aaPredicted RBP13.85□□□□□ -0.19
SNX1-209ENST00000559961 MARCH5Q9NX47 278 aa13.85□□□□□ -0.19
SNX1-209ENST00000559961 FNIP2Q9P278 1114 aa13.85□□□□□ -0.19
SNX1-209ENST00000559961 FBXL21Q9UKT6 434 aa13.85□□□□□ -0.19
SNX1-209ENST00000559961 RBM19Q9Y4C8 960 aaKnown RBP13.85□□□□□ -0.19
SNX1-209ENST00000559961 STK25O00506 426 aa13.84□□□□□ -0.19
SNX1-209ENST00000559961 AVPR2P30518 371 aa13.84□□□□□ -0.19
SNX1-209ENST00000559961 PRPHP41219 470 aa13.84□□□□□ -0.19
SNX1-209ENST00000559961 MCM2P49736 904 aa13.84□□□□□ -0.19
SNX1-209ENST00000559961 SMTNP53814 917 aa13.84□□□□□ -0.19
SNX1-209ENST00000559961 NHLH1Q02575 133 aa13.84□□□□□ -0.19
SNX1-209ENST00000559961 ST3GAL1Q11201 340 aa13.84□□□□□ -0.19
SNX1-209ENST00000559961 STRN3Q13033 797 aa13.84□□□□□ -0.19
SNX1-209ENST00000559961 LIN9Q5TKA1 542 aa13.84□□□□□ -0.19
SNX1-209ENST00000559961 ATF7IP2Q5U623 682 aa13.84□□□□□ -0.19
SNX1-209ENST00000559961 KANK3Q6NY19 840 aa13.84□□□□□ -0.19
SNX1-209ENST00000559961 SMG7Q92540 1137 aaKnown RBP13.84□□□□□ -0.19
SNX1-209ENST00000559961 TTPALQ9BTX7 342 aa13.84□□□□□ -0.19
SNX1-209ENST00000559961 TIPINQ9BVW5 301 aa13.84□□□□□ -0.19
SNX1-209ENST00000559961 CCDC94Q9BW85 323 aaPredicted RBP13.84□□□□□ -0.19
SNX1-209ENST00000559961 PDZD7Q9H5P4 517 aa13.84□□□□□ -0.19
SNX1-209ENST00000559961 KMT5AQ9NQR1 393 aa13.84□□□□□ -0.19
SNX1-209ENST00000559961 CHST7Q9NS84 486 aa13.84□□□□□ -0.19
SNX1-209ENST00000559961 IGSF9Q9P2J2 1179 aa13.84□□□□□ -0.19
SNX1-209ENST00000559961 CDH22Q9UJ99 828 aa13.84□□□□□ -0.19
SNX1-209ENST00000559961 GDAQ9Y2T3 454 aa13.84□□□□□ -0.19
SNX1-209ENST00000559961 CASTOR2A6NHX0 329 aa13.83□□□□□ -0.2
SNX1-209ENST00000559961 RECQL4O94761 1208 aa13.83□□□□□ -0.2
SNX1-209ENST00000559961 ASGR2P07307 311 aa13.83□□□□□ -0.2
SNX1-209ENST00000559961 MRE11P49959 708 aa13.83□□□□□ -0.2
SNX1-209ENST00000559961 TDGQ13569 410 aa13.83□□□□□ -0.2
SNX1-209ENST00000559961 FAM171A1Q5VUB5 890 aa13.83□□□□□ -0.2
SNX1-209ENST00000559961 GLYCTKQ8IVS8 523 aa13.83□□□□□ -0.2
SNX1-209ENST00000559961 KCTD17Q8N5Z5 321 aa13.83□□□□□ -0.2
SNX1-209ENST00000559961 ATOH1Q92858 354 aaPredicted RBP13.83□□□□□ -0.2
SNX1-209ENST00000559961 UROC1Q96N76 676 aa13.83□□□□□ -0.2
SNX1-209ENST00000559961 MRPL4Q9BYD3 311 aaKnown RBP13.83□□□□□ -0.2
SNX1-209ENST00000559961 GPR62Q9BZJ7 368 aa13.83□□□□□ -0.2
SNX1-209ENST00000559961 NT5C3AQ9H0P0 336 aa13.83□□□□□ -0.2
SNX1-209ENST00000559961 C17orf75Q9HAS0 396 aa13.83□□□□□ -0.2
SNX1-209ENST00000559961 ZDHHC7Q9NXF8 308 aa13.83□□□□□ -0.2
SNX1-209ENST00000559961 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.83□□□□□ -0.2
SNX1-209ENST00000559961 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.83□□□□□ -0.2
SNX1-209ENST00000559961 WDR81Q562E7 1941 aa13.82□□□□□ -0.2
SNX1-209ENST00000559961 TGM5O43548 720 aa13.82□□□□□ -0.2
SNX1-209ENST00000559961 BRD1O95696 1058 aa13.82□□□□□ -0.2
SNX1-209ENST00000559961 SPATA31D3P0C874 917 aa13.82□□□□□ -0.2
SNX1-209ENST00000559961 MYBP10242 640 aa13.82□□□□□ -0.2
SNX1-209ENST00000559961 PEX3P56589 373 aa13.82□□□□□ -0.2
SNX1-209ENST00000559961 DCLRE1AQ6PJP8 1040 aa13.82□□□□□ -0.2
SNX1-209ENST00000559961 SPATA31D4Q6ZUB0 917 aa13.82□□□□□ -0.2
SNX1-209ENST00000559961 IGSF22Q8N9C0 903 aa13.82□□□□□ -0.2
SNX1-209ENST00000559961 RASSF8Q8NHQ8 419 aa13.82□□□□□ -0.2
SNX1-209ENST00000559961 RABGGTAQ92696 567 aa13.82□□□□□ -0.2
SNX1-209ENST00000559961 NXPE3Q969Y0 559 aa13.82□□□□□ -0.2
SNX1-209ENST00000559961 ASIC4Q96FT7 647 aa13.82□□□□□ -0.2
SNX1-209ENST00000559961 RHOBTB2Q9BYZ6 727 aa13.82□□□□□ -0.2
SNX1-209ENST00000559961 WDR6Q9NNW5 1121 aaKnown RBP13.82□□□□□ -0.2
SNX1-209ENST00000559961 SLC38A7Q9NVC3 462 aa13.82□□□□□ -0.2
SNX1-209ENST00000559961 SMC3Q9UQE7 1217 aa13.82□□□□□ -0.2
SNX1-209ENST00000559961 PCDHB6Q9Y5E3 794 aa13.82□□□□□ -0.2
SNX1-209ENST00000559961 H0YCG3 227 aa13.81□□□□□ -0.2
SNX1-209ENST00000559961 XYLBO75191 536 aa13.81□□□□□ -0.2
SNX1-209ENST00000559961 B3GAT3O94766 335 aa13.81□□□□□ -0.2
SNX1-209ENST00000559961 MATR3P43243 847 aaKnown RBP eCLIP13.81□□□□□ -0.2
SNX1-209ENST00000559961 NBR1Q14596 966 aa13.81□□□□□ -0.2
SNX1-209ENST00000559961 PSMD5Q16401 504 aa13.81□□□□□ -0.2
SNX1-209ENST00000559961 ZNF568Q3ZCX4 644 aa13.81□□□□□ -0.2
SNX1-209ENST00000559961 PPM1LQ5SGD2 360 aa13.81□□□□□ -0.2
SNX1-209ENST00000559961 C4orf32Q8N8J7 132 aa13.81□□□□□ -0.2
SNX1-209ENST00000559961 GSTCDQ8NEC7 633 aa13.81□□□□□ -0.2
SNX1-209ENST00000559961 HASPINQ8TF76 798 aa13.81□□□□□ -0.2
SNX1-209ENST00000559961 BSNDQ8WZ55 320 aa13.81□□□□□ -0.2
SNX1-209ENST00000559961 DDX27Q96GQ7 796 aaKnown RBP13.81□□□□□ -0.2
SNX1-209ENST00000559961 B3GALT6Q96L58 329 aa13.81□□□□□ -0.2
SNX1-209ENST00000559961 PRKD2Q9BZL6 878 aa13.81□□□□□ -0.2
SNX1-209ENST00000559961 CCDC113Q9H0I3 377 aa13.81□□□□□ -0.2
SNX1-209ENST00000559961 TMEM134Q9H6X4 195 aa13.81□□□□□ -0.2
SNX1-209ENST00000559961 TNFSF13BQ9Y275 285 aa13.81□□□□□ -0.2
SNX1-209ENST00000559961 CLUHO75153 1309 aa13.81□□□□□ -0.2
SNX1-209ENST00000559961 ATG2AQ2TAZ0 1938 aa13.8□□□□□ -0.2
SNX1-209ENST00000559961 E9PMD0 336 aa13.8□□□□□ -0.2
SNX1-209ENST00000559961 HIP1RO75146 1068 aa13.8□□□□□ -0.2
SNX1-209ENST00000559961 RFPL2O75678 378 aa13.8□□□□□ -0.2
SNX1-209ENST00000559961 ELF1P32519 619 aa13.8□□□□□ -0.2
SNX1-209ENST00000559961 NPTX2P47972 431 aa13.8□□□□□ -0.2
SNX1-209ENST00000559961 C8orf34Q49A92 452 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms