RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 MYADMQ96S97 322 aa10.15□□□□□ -0.78
HDDC3-204ENST00000559834 ADPGKQ9BRR6 497 aa10.15□□□□□ -0.78
HDDC3-204ENST00000559834 TTPALQ9BTX7 342 aa10.15□□□□□ -0.78
HDDC3-204ENST00000559834 C2orf40Q9H1Z8 148 aa10.15□□□□□ -0.78
HDDC3-204ENST00000559834 FZD8Q9H461 694 aa10.15□□□□□ -0.78
HDDC3-204ENST00000559834 TUFT1Q9NNX1 390 aa10.15□□□□□ -0.78
HDDC3-204ENST00000559834 SIT1Q9Y3P8 196 aa10.15□□□□□ -0.78
HDDC3-204ENST00000559834 ZFHX2Q9C0A1 2572 aaPredicted RBP10.15□□□□□ -0.79
HDDC3-204ENST00000559834 KRBA1A5PL33 1030 aa10.14□□□□□ -0.79
HDDC3-204ENST00000559834 FAM205CA6NFA0 338 aa10.14□□□□□ -0.79
HDDC3-204ENST00000559834 ANHXE9PGG2 379 aa10.14□□□□□ -0.79
HDDC3-204ENST00000559834 F8W810 466 aa10.14□□□□□ -0.79
HDDC3-204ENST00000559834 EIF5BO60841 1220 aaKnown RBP10.14□□□□□ -0.79
HDDC3-204ENST00000559834 HNRNPA1P09651 372 aaKnown RBP eCLIP10.14□□□□□ -0.79
HDDC3-204ENST00000559834 FDPSP14324 419 aaKnown RBP10.14□□□□□ -0.79
HDDC3-204ENST00000559834 FSHRP23945 695 aa10.14□□□□□ -0.79
HDDC3-204ENST00000559834 PRPF4BQ13523 1007 aaKnown RBP10.14□□□□□ -0.79
HDDC3-204ENST00000559834 SAFBQ15424 915 aaKnown RBP eCLIP10.14□□□□□ -0.79
HDDC3-204ENST00000559834 MAPK6Q16659 721 aa10.14□□□□□ -0.79
HDDC3-204ENST00000559834 FAM187BQ17R55 369 aa10.14□□□□□ -0.79
HDDC3-204ENST00000559834 PPM1LQ5SGD2 360 aa10.14□□□□□ -0.79
HDDC3-204ENST00000559834 LIN9Q5TKA1 542 aa10.14□□□□□ -0.79
HDDC3-204ENST00000559834 FAM171A1Q5VUB5 890 aa10.14□□□□□ -0.79
HDDC3-204ENST00000559834 MAEAQ7L5Y9 396 aa10.14□□□□□ -0.79
HDDC3-204ENST00000559834 APBB1IPQ7Z5R6 666 aaPredicted RBP10.14□□□□□ -0.79
HDDC3-204ENST00000559834 CDR2LQ86X02 465 aaPredicted RBP10.14□□□□□ -0.79
HDDC3-204ENST00000559834 DIS3L2Q8IYB7 885 aaKnown RBP10.14□□□□□ -0.79
HDDC3-204ENST00000559834 NECAB1Q8N987 351 aa10.14□□□□□ -0.79
HDDC3-204ENST00000559834 ERMNQ8TAM6 284 aa10.14□□□□□ -0.79
HDDC3-204ENST00000559834 RABGGTAQ92696 567 aa10.14□□□□□ -0.79
HDDC3-204ENST00000559834 B3GALT6Q96L58 329 aa10.14□□□□□ -0.79
HDDC3-204ENST00000559834 TBC1D17Q9HA65 648 aa10.14□□□□□ -0.79
HDDC3-204ENST00000559834 CA14Q9ULX7 337 aa10.14□□□□□ -0.79
HDDC3-204ENST00000559834 TRIOO75962 3097 aa10.14□□□□□ -0.79
HDDC3-204ENST00000559834 RIF1Q5UIP0 2472 aaKnown RBP10.13□□□□□ -0.79
HDDC3-204ENST00000559834 FAM186AA6NE01 2351 aa10.13□□□□□ -0.79
HDDC3-204ENST00000559834 A0A087WWV3 80 aa10.13□□□□□ -0.79
HDDC3-204ENST00000559834 ACKR2O00590 384 aa10.13□□□□□ -0.79
HDDC3-204ENST00000559834 DTNBO60941 627 aa10.13□□□□□ -0.79
HDDC3-204ENST00000559834 XYLBO75191 536 aa10.13□□□□□ -0.79
HDDC3-204ENST00000559834 LMNAP02545 664 aaKnown RBP10.13□□□□□ -0.79
HDDC3-204ENST00000559834 SPATA31C1P0DKV0 1188 aa10.13□□□□□ -0.79
HDDC3-204ENST00000559834 RPL17P18621 184 aaKnown RBP10.13□□□□□ -0.79
HDDC3-204ENST00000559834 PPP2R5AQ15172 486 aa10.13□□□□□ -0.79
HDDC3-204ENST00000559834 ME3Q16798 604 aa10.13□□□□□ -0.79
HDDC3-204ENST00000559834 UVSSAQ2YD98 709 aa10.13□□□□□ -0.79
HDDC3-204ENST00000559834 DCLRE1AQ6PJP8 1040 aa10.13□□□□□ -0.79
HDDC3-204ENST00000559834 ZC3H14Q6PJT7 736 aaKnown RBP10.13□□□□□ -0.79
HDDC3-204ENST00000559834 RTL10Q7L3V2 364 aa10.13□□□□□ -0.79
HDDC3-204ENST00000559834 GET4Q7L5D6 327 aaPredicted RBP10.13□□□□□ -0.79
HDDC3-204ENST00000559834 ERMP1Q7Z2K6 904 aa10.13□□□□□ -0.79
HDDC3-204ENST00000559834 CATSPER3Q86XQ3 398 aa10.13□□□□□ -0.79
HDDC3-204ENST00000559834 DEPTORQ8TB45 409 aa10.13□□□□□ -0.79
HDDC3-204ENST00000559834 LNX1Q8TBB1 728 aaPredicted RBP10.13□□□□□ -0.79
HDDC3-204ENST00000559834 GPR152Q8TDT2 470 aa10.13□□□□□ -0.79
HDDC3-204ENST00000559834 PIK3R5Q8WYR1 880 aa10.13□□□□□ -0.79
HDDC3-204ENST00000559834 CLSTN3Q9BQT9 956 aa10.13□□□□□ -0.79
HDDC3-204ENST00000559834 POLR3CQ9BUI4 534 aaPredicted RBP10.13□□□□□ -0.79
HDDC3-204ENST00000559834 GPRC5CQ9NQ84 441 aa10.13□□□□□ -0.79
HDDC3-204ENST00000559834 ARHGEF3Q9NR81 526 aa10.13□□□□□ -0.79
HDDC3-204ENST00000559834 SLC2A4RGQ9NR83 387 aa10.13□□□□□ -0.79
HDDC3-204ENST00000559834 CDH7Q9ULB5 785 aa10.13□□□□□ -0.79
HDDC3-204ENST00000559834 NUMBLQ9Y6R0 609 aa10.13□□□□□ -0.79
HDDC3-204ENST00000559834 ARHGEF35A5YM69 484 aa10.12□□□□□ -0.79
HDDC3-204ENST00000559834 CASTOR2A6NHX0 329 aa10.12□□□□□ -0.79
HDDC3-204ENST00000559834 POTEMA6NI47 508 aa10.12□□□□□ -0.79
HDDC3-204ENST00000559834 TRAPPC3O43617 180 aa10.12□□□□□ -0.79
HDDC3-204ENST00000559834 CYP11B2P19099 503 aa10.12□□□□□ -0.79
HDDC3-204ENST00000559834 MUTP22033 750 aa10.12□□□□□ -0.79
HDDC3-204ENST00000559834 HOXA9P31269 272 aa10.12□□□□□ -0.79
HDDC3-204ENST00000559834 MCM7P33993 719 aa10.12□□□□□ -0.79
HDDC3-204ENST00000559834 NAMPTP43490 491 aa10.12□□□□□ -0.79
HDDC3-204ENST00000559834 ID4P47928 161 aa10.12□□□□□ -0.79
HDDC3-204ENST00000559834 EFNA5P52803 228 aa10.12□□□□□ -0.79
HDDC3-204ENST00000559834 HTR4Q13639 388 aa10.12□□□□□ -0.79
HDDC3-204ENST00000559834 PSMD5Q16401 504 aa10.12□□□□□ -0.79
HDDC3-204ENST00000559834 RTP2Q5QGT7 225 aa10.12□□□□□ -0.79
HDDC3-204ENST00000559834 CDCA2Q69YH5 1023 aaPredicted RBP10.12□□□□□ -0.79
HDDC3-204ENST00000559834 PADI6Q6TGC4 694 aa10.12□□□□□ -0.79
HDDC3-204ENST00000559834 PRSS55Q6UWB4 352 aaPredicted RBP10.12□□□□□ -0.79
HDDC3-204ENST00000559834 MTSS1LQ765P7 747 aa10.12□□□□□ -0.79
HDDC3-204ENST00000559834 GRASPQ7Z6J2 395 aaPredicted RBP10.12□□□□□ -0.79
HDDC3-204ENST00000559834 NSUN7Q8NE18 718 aaKnown RBP10.12□□□□□ -0.79
HDDC3-204ENST00000559834 HASPINQ8TF76 798 aa10.12□□□□□ -0.79
HDDC3-204ENST00000559834 GTF3C6Q969F1 213 aa10.12□□□□□ -0.79
HDDC3-204ENST00000559834 BORCS6Q96GS4 357 aa10.12□□□□□ -0.79
HDDC3-204ENST00000559834 IFT74Q96LB3 600 aa10.12□□□□□ -0.79
HDDC3-204ENST00000559834 PDZD7Q9H5P4 517 aa10.12□□□□□ -0.79
HDDC3-204ENST00000559834 SNTG2Q9NY99 539 aa10.12□□□□□ -0.79
HDDC3-204ENST00000559834 FBXW11Q9UKB1 542 aa10.12□□□□□ -0.79
HDDC3-204ENST00000559834 POLIQ9UNA4 740 aa10.12□□□□□ -0.79
HDDC3-204ENST00000559834 DENND4AQ7Z401 1863 aa10.12□□□□□ -0.79
HDDC3-204ENST00000559834 WDFY4Q6ZS81 3184 aa10.12□□□□□ -0.79
HDDC3-204ENST00000559834 PLXNA3P51805 1871 aa10.11□□□□□ -0.79
HDDC3-204ENST00000559834 RECQL4O94761 1208 aa10.11□□□□□ -0.79
HDDC3-204ENST00000559834 B3GAT3O94766 335 aa10.11□□□□□ -0.79
HDDC3-204ENST00000559834 KIF4AO95239 1232 aa10.11□□□□□ -0.79
HDDC3-204ENST00000559834 PRKCBP05771 671 aa10.11□□□□□ -0.79
HDDC3-204ENST00000559834 C8AP07357 584 aa10.11□□□□□ -0.79
HDDC3-204ENST00000559834 DCNP07585 359 aaKnown RBP10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 88.3 ms