RNA–Protein interactions for RNA: ENST00000558919.1

VPS13C-207, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 5

Gene VPS13C, Length 566 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-207ENST00000558919 LANCL2Q9NS86 450 aa4.99□□□□□ -1.61
VPS13C-207ENST00000558919 ANKRD62A6NC57 917 aa4.98□□□□□ -1.61
VPS13C-207ENST00000558919 KLHL33A6NCF5 533 aa4.98□□□□□ -1.61
VPS13C-207ENST00000558919 CXorf49A8MYA2 514 aaPredicted RBP4.98□□□□□ -1.61
VPS13C-207ENST00000558919 DIRC3C9JPN6 131 aa4.98□□□□□ -1.61
VPS13C-207ENST00000558919 CYR61O00622 381 aa4.98□□□□□ -1.61
VPS13C-207ENST00000558919 GABRDO14764 452 aa4.98□□□□□ -1.61
VPS13C-207ENST00000558919 NARSO43776 548 aaKnown RBP4.98□□□□□ -1.61
VPS13C-207ENST00000558919 KATNA1O75449 491 aa4.98□□□□□ -1.61
VPS13C-207ENST00000558919 ZNF202O95125 648 aa4.98□□□□□ -1.61
VPS13C-207ENST00000558919 MT-CO1P00395 513 aa4.98□□□□□ -1.61
VPS13C-207ENST00000558919 SNRPA1P09661 255 aaKnown RBP4.98□□□□□ -1.61
VPS13C-207ENST00000558919 MYBL2P10244 700 aa4.98□□□□□ -1.61
VPS13C-207ENST00000558919 ALOX15P16050 662 aaPredicted RBP4.98□□□□□ -1.61
VPS13C-207ENST00000558919 IBSPP21815 317 aaPredicted RBP4.98□□□□□ -1.61
VPS13C-207ENST00000558919 GUCY1A2P33402 732 aa4.98□□□□□ -1.61
VPS13C-207ENST00000558919 MCM7P33993 719 aa4.98□□□□□ -1.61
VPS13C-207ENST00000558919 FAM50AQ14320 339 aaKnown RBP4.98□□□□□ -1.61
VPS13C-207ENST00000558919 CSRP2Q16527 193 aa4.98□□□□□ -1.61
VPS13C-207ENST00000558919 EFCAB12Q6NXP0 572 aa4.98□□□□□ -1.61
VPS13C-207ENST00000558919 REPS2Q8NFH8 660 aa4.98□□□□□ -1.61
VPS13C-207ENST00000558919 ZFP28Q8NHY6 868 aa4.98□□□□□ -1.61
VPS13C-207ENST00000558919 CASKIN2Q8WXE0 1202 aa4.98□□□□□ -1.61
VPS13C-207ENST00000558919 JADE3Q92613 823 aa4.98□□□□□ -1.61
VPS13C-207ENST00000558919 FUBP3Q96I24 572 aaKnown RBP eCLIP4.98□□□□□ -1.61
VPS13C-207ENST00000558919 SLC2A13Q96QE2 648 aa4.98□□□□□ -1.61
VPS13C-207ENST00000558919 CCDC8Q9H0W5 538 aaPredicted RBP4.98□□□□□ -1.61
VPS13C-207ENST00000558919 SPON1Q9HCB6 807 aa4.98□□□□□ -1.61
VPS13C-207ENST00000558919 MOCS1Q9NZB8 636 aa4.98□□□□□ -1.61
VPS13C-207ENST00000558919 SORCS3Q9UPU3 1222 aa4.98□□□□□ -1.61
VPS13C-207ENST00000558919 DNM3Q9UQ16 869 aa4.98□□□□□ -1.61
VPS13C-207ENST00000558919 SPEF1Q9Y4P9 236 aa4.98□□□□□ -1.61
VPS13C-207ENST00000558919 MRFAP1Q9Y605 127 aa4.98□□□□□ -1.61
VPS13C-207ENST00000558919 ATRNL1Q5VV63 1379 aa4.98□□□□□ -1.61
VPS13C-207ENST00000558919 FZD9O00144 591 aa4.97□□□□□ -1.61
VPS13C-207ENST00000558919 PCDHGA12O60330 932 aa4.97□□□□□ -1.61
VPS13C-207ENST00000558919 FSHBP01225 129 aa4.97□□□□□ -1.61
VPS13C-207ENST00000558919 PTGS2P35354 604 aa4.97□□□□□ -1.61
VPS13C-207ENST00000558919 CLRN1P58418 232 aa4.97□□□□□ -1.61
VPS13C-207ENST00000558919 ABHD18Q0P651 414 aa4.97□□□□□ -1.61
VPS13C-207ENST00000558919 SEPT2Q15019 361 aa4.97□□□□□ -1.61
VPS13C-207ENST00000558919 ABCB5Q2M3G0 1257 aa4.97□□□□□ -1.61
VPS13C-207ENST00000558919 FNDC7Q5VTL7 733 aa4.97□□□□□ -1.61
VPS13C-207ENST00000558919 SLC16A11Q8NCK7 471 aa4.97□□□□□ -1.61
VPS13C-207ENST00000558919 OR10H5Q8NGA6 315 aa4.97□□□□□ -1.61
VPS13C-207ENST00000558919 ZNF483Q8TF39 744 aaPredicted RBP4.97□□□□□ -1.61
VPS13C-207ENST00000558919 SLC25A43Q8WUT9 341 aaPredicted RBP4.97□□□□□ -1.61
VPS13C-207ENST00000558919 TFAP2CQ92754 450 aa4.97□□□□□ -1.61
VPS13C-207ENST00000558919 SLC13A1Q9BZW2 595 aa4.97□□□□□ -1.61
VPS13C-207ENST00000558919 SENP6Q9GZR1 1112 aaPredicted RBP4.97□□□□□ -1.61
VPS13C-207ENST00000558919 MANSC1Q9H8J5 431 aa4.97□□□□□ -1.61
VPS13C-207ENST00000558919 TMEM140Q9NV12 185 aa4.97□□□□□ -1.61
VPS13C-207ENST00000558919 FAM30AQ9NZY2 134 aa4.97□□□□□ -1.61
VPS13C-207ENST00000558919 SRRDQ9UH36 339 aa4.97□□□□□ -1.61
VPS13C-207ENST00000558919 SAP30BPQ9UHR5 308 aaKnown RBP4.97□□□□□ -1.61
VPS13C-207ENST00000558919 EIF2B4Q9UI10 523 aaKnown RBP4.97□□□□□ -1.61
VPS13C-207ENST00000558919 SIK3Q9Y2K2 1263 aa4.97□□□□□ -1.61
VPS13C-207ENST00000558919 NOP58Q9Y2X3 529 aaKnown RBP4.97□□□□□ -1.61
VPS13C-207ENST00000558919 PCDHGA9Q9Y5G4 932 aaKnown RBP4.97□□□□□ -1.61
VPS13C-207ENST00000558919 PCDHGA8Q9Y5G5 932 aa4.97□□□□□ -1.61
VPS13C-207ENST00000558919 PCDHGA7Q9Y5G6 932 aa4.97□□□□□ -1.61
VPS13C-207ENST00000558919 PCDHGA6Q9Y5G7 932 aa4.97□□□□□ -1.61
VPS13C-207ENST00000558919 PCDHGA3Q9Y5H0 932 aa4.97□□□□□ -1.61
VPS13C-207ENST00000558919 HS3ST3A1Q9Y663 406 aa4.97□□□□□ -1.61
VPS13C-207ENST00000558919 TEX33O43247 280 aa4.96□□□□□ -1.62
VPS13C-207ENST00000558919 AKAP8O43823 692 aaKnown RBP4.96□□□□□ -1.62
VPS13C-207ENST00000558919 FAM20BO75063 409 aa4.96□□□□□ -1.62
VPS13C-207ENST00000558919 NDUFS2O75306 463 aa4.96□□□□□ -1.62
VPS13C-207ENST00000558919 PPFIA4O75335 1185 aa4.96□□□□□ -1.62
VPS13C-207ENST00000558919 MAKP20794 623 aa4.96□□□□□ -1.62
VPS13C-207ENST00000558919 APOBEC3AP31941 199 aaPredicted RBP4.96□□□□□ -1.62
VPS13C-207ENST00000558919 SLC6A9P48067 706 aa4.96□□□□□ -1.62
VPS13C-207ENST00000558919 SLC16A1P53985 500 aa4.96□□□□□ -1.62
VPS13C-207ENST00000558919 ACAP2Q15057 778 aa4.96□□□□□ -1.62
VPS13C-207ENST00000558919 RRP12Q5JTH9 1297 aaKnown RBP4.96□□□□□ -1.62
VPS13C-207ENST00000558919 ATXN7L2Q5T6C5 722 aaPredicted RBP4.96□□□□□ -1.62
VPS13C-207ENST00000558919 IGFL4Q6B9Z1 124 aa4.96□□□□□ -1.62
VPS13C-207ENST00000558919 OTUD7BQ6GQQ9 843 aa4.96□□□□□ -1.62
VPS13C-207ENST00000558919 FAM177A1Q8N128 213 aaPredicted RBP4.96□□□□□ -1.62
VPS13C-207ENST00000558919 ZNF276Q8N554 614 aa4.96□□□□□ -1.62
VPS13C-207ENST00000558919 PPM1NQ8N819 430 aa4.96□□□□□ -1.62
VPS13C-207ENST00000558919 OR2I1PQ8NGU4 316 aa4.96□□□□□ -1.62
VPS13C-207ENST00000558919 SLC35B2Q8TB61 432 aa4.96□□□□□ -1.62
VPS13C-207ENST00000558919 CPT1CQ8TCG5 803 aa4.96□□□□□ -1.62
VPS13C-207ENST00000558919 NRG4Q8WWG1 115 aa4.96□□□□□ -1.62
VPS13C-207ENST00000558919 C7orf25Q9BPX7 421 aa4.96□□□□□ -1.62
VPS13C-207ENST00000558919 SLC46A2Q9BY10 475 aa4.96□□□□□ -1.62
VPS13C-207ENST00000558919 HOMER2Q9NSB8 354 aa4.96□□□□□ -1.62
VPS13C-207ENST00000558919 GPRC5BQ9NZH0 403 aa4.96□□□□□ -1.62
VPS13C-207ENST00000558919 POGKQ9P215 609 aa4.96□□□□□ -1.62
VPS13C-207ENST00000558919 TUBD1Q9UJT1 453 aa4.96□□□□□ -1.62
VPS13C-207ENST00000558919 TNKSO95271 1327 aa4.96□□□□□ -1.62
VPS13C-207ENST00000558919 XPOTO43592 962 aaKnown RBP4.95□□□□□ -1.62
VPS13C-207ENST00000558919 SCAF4O95104 1147 aaKnown RBP4.95□□□□□ -1.62
VPS13C-207ENST00000558919 C5AR1P21730 350 aa4.95□□□□□ -1.62
VPS13C-207ENST00000558919 NHLH2Q02577 135 aa4.95□□□□□ -1.62
VPS13C-207ENST00000558919 PCBP2Q15366 365 aaKnown RBP eCLIP4.95□□□□□ -1.62
VPS13C-207ENST00000558919 AFMIDQ63HM1 303 aa4.95□□□□□ -1.62
VPS13C-207ENST00000558919 GDF7Q7Z4P5 450 aa4.95□□□□□ -1.62
VPS13C-207ENST00000558919 SYT12Q8IV01 421 aa4.95□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms