RNA–Protein interactions for RNA: ENST00000556726.5

CCDC88C-211, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5

Gene CCDC88C, Length 3,617 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-211ENST00000556726 PSMC5P62195 406 aa12.98□□□□□ -0.33
CCDC88C-211ENST00000556726 SPIRE1Q08AE8 756 aa12.98□□□□□ -0.33
CCDC88C-211ENST00000556726 SLC7A3Q8WY07 619 aa12.98□□□□□ -0.33
CCDC88C-211ENST00000556726 ENTPD3O75355 529 aa12.98□□□□□ -0.33
CCDC88C-211ENST00000556726 CSDE1O75534 798 aaKnown RBP12.98□□□□□ -0.33
CCDC88C-211ENST00000556726 ADRB2P07550 413 aa12.98□□□□□ -0.33
CCDC88C-211ENST00000556726 CHRNA3P32297 505 aa12.98□□□□□ -0.33
CCDC88C-211ENST00000556726 NPTX2P47972 431 aa12.98□□□□□ -0.33
CCDC88C-211ENST00000556726 ANKMY2Q8IV38 441 aa12.98□□□□□ -0.33
CCDC88C-211ENST00000556726 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP12.98□□□□□ -0.33
CCDC88C-211ENST00000556726 ATP6V0A1Q93050 837 aa12.98□□□□□ -0.33
CCDC88C-211ENST00000556726 XPO6Q96QU8 1125 aaKnown RBP12.98□□□□□ -0.33
CCDC88C-211ENST00000556726 KLF6Q99612 283 aaPredicted RBP12.98□□□□□ -0.33
CCDC88C-211ENST00000556726 TARS2Q9BW92 718 aaKnown RBP12.98□□□□□ -0.33
CCDC88C-211ENST00000556726 CALN1Q9BXU9 219 aa12.98□□□□□ -0.33
CCDC88C-211ENST00000556726 C10orf88Q9H8K7 445 aa12.98□□□□□ -0.33
CCDC88C-211ENST00000556726 ODF2LQ9ULJ1 636 aa12.98□□□□□ -0.33
CCDC88C-211ENST00000556726 MIF4GDA9UHW6 222 aaKnown RBP12.98□□□□□ -0.33
CCDC88C-211ENST00000556726 EIF3DO15371 548 aaKnown RBP eCLIP12.98□□□□□ -0.33
CCDC88C-211ENST00000556726 TLR3O15455 904 aaKnown RBP12.98□□□□□ -0.33
CCDC88C-211ENST00000556726 PHF2O75151 1096 aa12.98□□□□□ -0.33
CCDC88C-211ENST00000556726 LCA5LO95447 670 aa12.98□□□□□ -0.33
CCDC88C-211ENST00000556726 ZNF131P52739 623 aa12.98□□□□□ -0.33
CCDC88C-211ENST00000556726 CDO1Q16878 200 aa12.98□□□□□ -0.33
CCDC88C-211ENST00000556726 SMTNL2Q2TAL5 461 aa12.98□□□□□ -0.33
CCDC88C-211ENST00000556726 HHATQ5VTY9 493 aa12.98□□□□□ -0.33
CCDC88C-211ENST00000556726 RSBN1LQ6PCB5 846 aaPredicted RBP12.98□□□□□ -0.33
CCDC88C-211ENST00000556726 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.98□□□□□ -0.33
CCDC88C-211ENST00000556726 FAM151AQ8WW52 585 aa12.98□□□□□ -0.33
CCDC88C-211ENST00000556726 SLC5A5Q92911 643 aa12.98□□□□□ -0.33
CCDC88C-211ENST00000556726 ZBTB45Q96K62 511 aaPredicted RBP12.98□□□□□ -0.33
CCDC88C-211ENST00000556726 ZSWIM1Q9BR11 485 aa12.98□□□□□ -0.33
CCDC88C-211ENST00000556726 PDGFDQ9GZP0 370 aaPredicted RBP12.98□□□□□ -0.33
CCDC88C-211ENST00000556726 CARD9Q9H257 536 aa12.98□□□□□ -0.33
CCDC88C-211ENST00000556726 EP400Q96L91 3159 aa12.97□□□□□ -0.33
CCDC88C-211ENST00000556726 EXOC1LA0A1B0GW35 172 aa12.97□□□□□ -0.33
CCDC88C-211ENST00000556726 CYP11B1P15538 503 aa12.97□□□□□ -0.33
CCDC88C-211ENST00000556726 SESN3P58005 492 aa12.97□□□□□ -0.33
CCDC88C-211ENST00000556726 PPP2R5AQ15172 486 aa12.97□□□□□ -0.33
CCDC88C-211ENST00000556726 PPP1R21Q6ZMI0 780 aa12.97□□□□□ -0.33
CCDC88C-211ENST00000556726 SV2AQ7L0J3 742 aa12.97□□□□□ -0.33
CCDC88C-211ENST00000556726 C4orf33Q8N1A6 199 aa12.97□□□□□ -0.33
CCDC88C-211ENST00000556726 CALR3Q96L12 384 aaKnown RBP12.97□□□□□ -0.33
CCDC88C-211ENST00000556726 SIX2Q9NPC8 291 aa12.97□□□□□ -0.33
CCDC88C-211ENST00000556726 ATP2A1O14983 1001 aa12.97□□□□□ -0.33
CCDC88C-211ENST00000556726 NR3C2P08235 984 aa12.97□□□□□ -0.33
CCDC88C-211ENST00000556726 RARAP10276 462 aa12.97□□□□□ -0.33
CCDC88C-211ENST00000556726 RALAP11233 206 aa12.97□□□□□ -0.33
CCDC88C-211ENST00000556726 CAP2P40123 477 aa12.97□□□□□ -0.33
CCDC88C-211ENST00000556726 PSMC4P43686 418 aa12.97□□□□□ -0.33
CCDC88C-211ENST00000556726 ITIH3Q06033 890 aa12.97□□□□□ -0.33
CCDC88C-211ENST00000556726 PPP2R5EQ16537 467 aa12.97□□□□□ -0.33
CCDC88C-211ENST00000556726 SLC13A5Q86YT5 568 aaPredicted RBP12.97□□□□□ -0.33
CCDC88C-211ENST00000556726 CCDC89Q8N998 374 aa12.97□□□□□ -0.33
CCDC88C-211ENST00000556726 MKL1Q969V6 931 aa12.97□□□□□ -0.33
CCDC88C-211ENST00000556726 KLHL29Q96CT2 875 aa12.97□□□□□ -0.33
CCDC88C-211ENST00000556726 CHST7Q9NS84 486 aa12.97□□□□□ -0.33
CCDC88C-211ENST00000556726 DDX20Q9UHI6 824 aaKnown RBP12.97□□□□□ -0.33
CCDC88C-211ENST00000556726 CYP3A7-CYP3A51PA0A087WV96 503 aa12.96□□□□□ -0.33
CCDC88C-211ENST00000556726 RASA4BC9J798 803 aa12.96□□□□□ -0.33
CCDC88C-211ENST00000556726 RASA4O43374 803 aa12.96□□□□□ -0.33
CCDC88C-211ENST00000556726 CYP3A7P24462 503 aa12.96□□□□□ -0.33
CCDC88C-211ENST00000556726 GNA15P30679 374 aa12.96□□□□□ -0.33
CCDC88C-211ENST00000556726 IRX3P78415 501 aaPredicted RBP12.96□□□□□ -0.33
CCDC88C-211ENST00000556726 LACTBP83111 547 aaPredicted RBP12.96□□□□□ -0.33
CCDC88C-211ENST00000556726 ITGB3BPQ13352 177 aaPredicted RBP12.96□□□□□ -0.33
CCDC88C-211ENST00000556726 BBS9Q3SYG4 887 aa12.96□□□□□ -0.33
CCDC88C-211ENST00000556726 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.96□□□□□ -0.33
CCDC88C-211ENST00000556726 SCFD2Q8WU76 684 aa12.96□□□□□ -0.33
CCDC88C-211ENST00000556726 PCDHB18PQ96TA0 734 aa12.96□□□□□ -0.33
CCDC88C-211ENST00000556726 IDI2Q9BXS1 227 aa12.96□□□□□ -0.33
CCDC88C-211ENST00000556726 COL20A1Q9P218 1284 aa12.96□□□□□ -0.33
CCDC88C-211ENST00000556726 PCDHA10Q9Y5I2 948 aa12.96□□□□□ -0.33
CCDC88C-211ENST00000556726 PODXLO00592 558 aa12.96□□□□□ -0.33
CCDC88C-211ENST00000556726 CYP3A4P08684 503 aa12.96□□□□□ -0.33
CCDC88C-211ENST00000556726 WEE2P0C1S8 567 aa12.96□□□□□ -0.33
CCDC88C-211ENST00000556726 COILP38432 576 aaPredicted RBP12.96□□□□□ -0.33
CCDC88C-211ENST00000556726 ITGA8P53708 1063 aa12.96□□□□□ -0.33
CCDC88C-211ENST00000556726 SNCBQ16143 134 aa12.96□□□□□ -0.33
CCDC88C-211ENST00000556726 C6orf118Q5T5N4 469 aa12.96□□□□□ -0.33
CCDC88C-211ENST00000556726 CIAPIN1Q6FI81 312 aa12.96□□□□□ -0.33
CCDC88C-211ENST00000556726 LRRC57Q8N9N7 239 aa12.96□□□□□ -0.33
CCDC88C-211ENST00000556726 GMCL1P1Q8NEA9 526 aa12.96□□□□□ -0.33
CCDC88C-211ENST00000556726 KLC4Q9NSK0 619 aa12.96□□□□□ -0.33
CCDC88C-211ENST00000556726 TBX20Q9UMR3 447 aa12.96□□□□□ -0.33
CCDC88C-211ENST00000556726 MAGED2Q9UNF1 606 aaPredicted RBP12.96□□□□□ -0.33
CCDC88C-211ENST00000556726 OPLAHO14841 1288 aa12.96□□□□□ -0.34
CCDC88C-211ENST00000556726 TMEM191BP0C7N4 346 aa12.96□□□□□ -0.34
CCDC88C-211ENST00000556726 EIF3BP55884 814 aaKnown RBP12.96□□□□□ -0.34
CCDC88C-211ENST00000556726 GNPTABQ3T906 1256 aa12.96□□□□□ -0.34
CCDC88C-211ENST00000556726 ATP13A4Q4VNC1 1196 aa12.96□□□□□ -0.34
CCDC88C-211ENST00000556726 COBLL1Q53SF7 1204 aa12.96□□□□□ -0.34
CCDC88C-211ENST00000556726 HYIQ5T013 277 aa12.96□□□□□ -0.34
CCDC88C-211ENST00000556726 TRIM68Q6AZZ1 485 aa12.96□□□□□ -0.34
CCDC88C-211ENST00000556726 MOXD1Q6UVY6 613 aa12.96□□□□□ -0.34
CCDC88C-211ENST00000556726 KCNV2Q8TDN2 545 aa12.96□□□□□ -0.34
CCDC88C-211ENST00000556726 SEMA4DQ92854 862 aa12.96□□□□□ -0.34
CCDC88C-211ENST00000556726 IQCGQ9H095 443 aaKnown RBP12.96□□□□□ -0.34
CCDC88C-211ENST00000556726 TBC1D22BQ9NU19 505 aa12.96□□□□□ -0.34
CCDC88C-211ENST00000556726 RBAKQ9NYW8 714 aaPredicted RBP12.96□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 70.7 ms