RNA–Protein interactions for RNA: ENST00000553308.1

SYNE2-209, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 557 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-209ENST00000553308 PARP2Q9UGN5 583 aa10.1□□□□□ -0.79
SYNE2-209ENST00000553308 MTF2Q9Y483 593 aaPredicted RBP10.1□□□□□ -0.79
SYNE2-209ENST00000553308 OTOGLQ3ZCN5 2332 aa10.1□□□□□ -0.79
SYNE2-209ENST00000553308 SF3B1O75533 1304 aaKnown RBP eCLIP10.09□□□□□ -0.79
SYNE2-209ENST00000553308 CACNA1IQ9P0X4 2223 aa10.09□□□□□ -0.79
SYNE2-209ENST00000553308 CCDC194A0A1B0GVG4 234 aa10.09□□□□□ -0.79
SYNE2-209ENST00000553308 CASTOR2A6NHX0 329 aa10.09□□□□□ -0.79
SYNE2-209ENST00000553308 CCL16O15467 120 aa10.09□□□□□ -0.79
SYNE2-209ENST00000553308 ADAM12O43184 909 aa10.09□□□□□ -0.79
SYNE2-209ENST00000553308 CCNT1O60563 726 aaKnown RBP10.09□□□□□ -0.79
SYNE2-209ENST00000553308 DTNBO60941 627 aa10.09□□□□□ -0.79
SYNE2-209ENST00000553308 TADA2AO75478 443 aa10.09□□□□□ -0.79
SYNE2-209ENST00000553308 KIF4AO95239 1232 aa10.09□□□□□ -0.79
SYNE2-209ENST00000553308 C8AP07357 584 aa10.09□□□□□ -0.79
SYNE2-209ENST00000553308 GCFC2P16383 781 aaKnown RBP10.09□□□□□ -0.79
SYNE2-209ENST00000553308 CD72P21854 359 aa10.09□□□□□ -0.79
SYNE2-209ENST00000553308 GLRA2P23416 452 aa10.09□□□□□ -0.79
SYNE2-209ENST00000553308 PSMA5P28066 241 aa10.09□□□□□ -0.79
SYNE2-209ENST00000553308 NCBP1Q09161 790 aaKnown RBP10.09□□□□□ -0.79
SYNE2-209ENST00000553308 STK3Q13188 491 aa10.09□□□□□ -0.79
SYNE2-209ENST00000553308 TFDP1Q14186 410 aa10.09□□□□□ -0.79
SYNE2-209ENST00000553308 HSP90AA2PQ14568 343 aaPredicted RBP10.09□□□□□ -0.79
SYNE2-209ENST00000553308 UBXN2BQ14CS0 331 aa10.09□□□□□ -0.79
SYNE2-209ENST00000553308 PPM1LQ5SGD2 360 aa10.09□□□□□ -0.79
SYNE2-209ENST00000553308 LIN9Q5TKA1 542 aa10.09□□□□□ -0.79
SYNE2-209ENST00000553308 PPP4R3AQ6IN85 833 aa10.09□□□□□ -0.79
SYNE2-209ENST00000553308 SLC27A1Q6PCB7 646 aa10.09□□□□□ -0.79
SYNE2-209ENST00000553308 PIK3AP1Q6ZUJ8 805 aa10.09□□□□□ -0.79
SYNE2-209ENST00000553308 CEP57Q86XR8 500 aa10.09□□□□□ -0.79
SYNE2-209ENST00000553308 TPH2Q8IWU9 490 aa10.09□□□□□ -0.79
SYNE2-209ENST00000553308 ITFG1Q8TB96 612 aa10.09□□□□□ -0.79
SYNE2-209ENST00000553308 OXER1Q8TDS5 423 aa10.09□□□□□ -0.79
SYNE2-209ENST00000553308 FGF13Q92913 245 aa10.09□□□□□ -0.79
SYNE2-209ENST00000553308 SHDQ96IW2 340 aa10.09□□□□□ -0.79
SYNE2-209ENST00000553308 CNTNAP3BQ96NU0 1288 aa10.09□□□□□ -0.79
SYNE2-209ENST00000553308 KXD1Q9BQD3 176 aa10.09□□□□□ -0.79
SYNE2-209ENST00000553308 CLSTN3Q9BQT9 956 aa10.09□□□□□ -0.79
SYNE2-209ENST00000553308 DDX23Q9BUQ8 820 aaKnown RBP10.09□□□□□ -0.79
SYNE2-209ENST00000553308 PHF20Q9BVI0 1012 aa10.09□□□□□ -0.79
SYNE2-209ENST00000553308 BCO2Q9BYV7 579 aa10.09□□□□□ -0.79
SYNE2-209ENST00000553308 CNTNAP3Q9BZ76 1288 aa10.09□□□□□ -0.79
SYNE2-209ENST00000553308 ZSWIM4Q9H7M6 989 aa10.09□□□□□ -0.79
SYNE2-209ENST00000553308 GJB4Q9NTQ9 266 aa10.09□□□□□ -0.79
SYNE2-209ENST00000553308 NCDNQ9UBB6 729 aa10.09□□□□□ -0.79
SYNE2-209ENST00000553308 POLIQ9UNA4 740 aa10.09□□□□□ -0.79
SYNE2-209ENST00000553308 ZFP37Q9Y6Q3 630 aaPredicted RBP10.09□□□□□ -0.79
SYNE2-209ENST00000553308 ZNF292O60281 2723 aa10.09□□□□□ -0.79
SYNE2-209ENST00000553308 DMXL1Q9Y485 3027 aa10.09□□□□□ -0.79
SYNE2-209ENST00000553308 FAM205CA6NFA0 338 aa10.08□□□□□ -0.8
SYNE2-209ENST00000553308 FAM170BA6NMN3 283 aa10.08□□□□□ -0.8
SYNE2-209ENST00000553308 TBX3O15119 743 aa10.08□□□□□ -0.8
SYNE2-209ENST00000553308 SPTLC1O15269 473 aa10.08□□□□□ -0.8
SYNE2-209ENST00000553308 LAMTOR5O43504 91 aa10.08□□□□□ -0.8
SYNE2-209ENST00000553308 MARCH6O60337 910 aa10.08□□□□□ -0.8
SYNE2-209ENST00000553308 HNRNPA1P09651 372 aaKnown RBP eCLIP10.08□□□□□ -0.8
SYNE2-209ENST00000553308 ARL2P36404 184 aa10.08□□□□□ -0.8
SYNE2-209ENST00000553308 CSTF1Q05048 431 aaKnown RBP10.08□□□□□ -0.8
SYNE2-209ENST00000553308 POU5F1BQ06416 359 aa10.08□□□□□ -0.8
SYNE2-209ENST00000553308 TUSC3Q13454 348 aa10.08□□□□□ -0.8
SYNE2-209ENST00000553308 PSMD5Q16401 504 aa10.08□□□□□ -0.8
SYNE2-209ENST00000553308 ZNF528Q3MIS6 628 aa10.08□□□□□ -0.8
SYNE2-209ENST00000553308 SLC44A4Q53GD3 710 aa10.08□□□□□ -0.8
SYNE2-209ENST00000553308 EARS2Q5JPH6 523 aaKnown RBP10.08□□□□□ -0.8
SYNE2-209ENST00000553308 VARS2Q5ST30 1063 aaKnown RBP10.08□□□□□ -0.8
SYNE2-209ENST00000553308 FAM171A1Q5VUB5 890 aa10.08□□□□□ -0.8
SYNE2-209ENST00000553308 MTSS1LQ765P7 747 aa10.08□□□□□ -0.8
SYNE2-209ENST00000553308 RUFY3Q7L099 469 aa10.08□□□□□ -0.8
SYNE2-209ENST00000553308 FAM177A1Q8N128 213 aaPredicted RBP10.08□□□□□ -0.8
SYNE2-209ENST00000553308 LNX1Q8TBB1 728 aaPredicted RBP10.08□□□□□ -0.8
SYNE2-209ENST00000553308 SLC7A14Q8TBB6 771 aa10.08□□□□□ -0.8
SYNE2-209ENST00000553308 ING5Q8WYH8 240 aa10.08□□□□□ -0.8
SYNE2-209ENST00000553308 PIK3R5Q8WYR1 880 aa10.08□□□□□ -0.8
SYNE2-209ENST00000553308 TTPALQ9BTX7 342 aa10.08□□□□□ -0.8
SYNE2-209ENST00000553308 POLR3FQ9H1D9 316 aaPredicted RBP10.08□□□□□ -0.8
SYNE2-209ENST00000553308 CXCL16Q9H2A7 254 aa10.08□□□□□ -0.8
SYNE2-209ENST00000553308 LTB4R2Q9NPC1 389 aa10.08□□□□□ -0.8
SYNE2-209ENST00000553308 HCFC1R1Q9NWW0 138 aa10.08□□□□□ -0.8
SYNE2-209ENST00000553308 FBXO4Q9UKT5 387 aa10.08□□□□□ -0.8
SYNE2-209ENST00000553308 ZMYM2Q9UBW7 1377 aa10.08□□□□□ -0.8
SYNE2-209ENST00000553308 VWA8A3KMH1 1905 aa10.07□□□□□ -0.8
SYNE2-209ENST00000553308 A0A1B0GUA9 196 aa10.07□□□□□ -0.8
SYNE2-209ENST00000553308 PTGESO14684 152 aa10.07□□□□□ -0.8
SYNE2-209ENST00000553308 DGAT1O75907 488 aa10.07□□□□□ -0.8
SYNE2-209ENST00000553308 KRT37O76014 449 aa10.07□□□□□ -0.8
SYNE2-209ENST00000553308 SLITRK3O94933 977 aa10.07□□□□□ -0.8
SYNE2-209ENST00000553308 TARSP26639 723 aaKnown RBP10.07□□□□□ -0.8
SYNE2-209ENST00000553308 HOXA9P31269 272 aa10.07□□□□□ -0.8
SYNE2-209ENST00000553308 PRKCQQ04759 706 aa10.07□□□□□ -0.8
SYNE2-209ENST00000553308 TPRG1Q6ZUI0 275 aa10.07□□□□□ -0.8
SYNE2-209ENST00000553308 CENPQQ7L2Z9 268 aaPredicted RBP10.07□□□□□ -0.8
SYNE2-209ENST00000553308 NPAS3Q8IXF0 933 aa10.07□□□□□ -0.8
SYNE2-209ENST00000553308 ZNF274Q96GC6 653 aaPredicted RBP10.07□□□□□ -0.8
SYNE2-209ENST00000553308 EIF2AK1Q9BQI3 630 aaKnown RBP10.07□□□□□ -0.8
SYNE2-209ENST00000553308 NFKBIZQ9BYH8 718 aa10.07□□□□□ -0.8
SYNE2-209ENST00000553308 ZSWIM6Q9HCJ5 1215 aa10.07□□□□□ -0.8
SYNE2-209ENST00000553308 GPRC5CQ9NQ84 441 aa10.07□□□□□ -0.8
SYNE2-209ENST00000553308 SMG5Q9UPR3 1016 aaKnown RBP10.07□□□□□ -0.8
SYNE2-209ENST00000553308 PCDHGA2Q9Y5H1 932 aa10.07□□□□□ -0.8
SYNE2-209ENST00000553308 NOTCH4Q99466 2003 aa10.07□□□□□ -0.8
SYNE2-209ENST00000553308 GPR179Q6PRD1 2367 aa10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms