RNA–Protein interactions for RNA: ENST00000553278.1

SCFD1-208, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 795 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-208ENST00000553278 RSRC2Q7L4I2 434 aaKnown RBP6.85□□□□□ -1.31
SCFD1-208ENST00000553278 MIB1Q86YT6 1006 aa6.85□□□□□ -1.31
SCFD1-208ENST00000553278 CACNA2D3Q8IZS8 1091 aa6.85□□□□□ -1.31
SCFD1-208ENST00000553278 TMTC2Q8N394 836 aa6.85□□□□□ -1.31
SCFD1-208ENST00000553278 ATP11CQ8NB49 1132 aa6.85□□□□□ -1.31
SCFD1-208ENST00000553278 HOXB13Q92826 284 aaPredicted RBP6.85□□□□□ -1.31
SCFD1-208ENST00000553278 RAB24Q969Q5 203 aa6.85□□□□□ -1.31
SCFD1-208ENST00000553278 CYFIP2Q96F07 1278 aa6.85□□□□□ -1.31
SCFD1-208ENST00000553278 DYDC2Q96IM9 177 aa6.85□□□□□ -1.31
SCFD1-208ENST00000553278 TMX3Q96JJ7 454 aa6.85□□□□□ -1.31
SCFD1-208ENST00000553278 MRGPRX4Q96LA9 322 aa6.85□□□□□ -1.31
SCFD1-208ENST00000553278 UBXN10Q96LJ8 280 aa6.85□□□□□ -1.31
SCFD1-208ENST00000553278 ZSCAN31Q96LW9 406 aaPredicted RBP6.85□□□□□ -1.31
SCFD1-208ENST00000553278 DMRTA2Q96SC8 542 aa6.85□□□□□ -1.31
SCFD1-208ENST00000553278 BRIP1Q9BX63 1249 aa6.85□□□□□ -1.31
SCFD1-208ENST00000553278 STK33Q9BYT3 514 aa6.85□□□□□ -1.31
SCFD1-208ENST00000553278 HAPLN2Q9GZV7 340 aa6.85□□□□□ -1.31
SCFD1-208ENST00000553278 AFF4Q9UHB7 1163 aaKnown RBP6.85□□□□□ -1.31
SCFD1-208ENST00000553278 IRAK2O43187 625 aa6.84□□□□□ -1.31
SCFD1-208ENST00000553278 PLA2G6O60733 806 aa6.84□□□□□ -1.31
SCFD1-208ENST00000553278 EFEMP2O95967 443 aa6.84□□□□□ -1.31
SCFD1-208ENST00000553278 LTA4HP09960 611 aaKnown RBP6.84□□□□□ -1.31
SCFD1-208ENST00000553278 MALP21145 153 aa6.84□□□□□ -1.31
SCFD1-208ENST00000553278 ADSLP30566 484 aaPredicted RBP6.84□□□□□ -1.31
SCFD1-208ENST00000553278 THBS2P35442 1172 aa6.84□□□□□ -1.31
SCFD1-208ENST00000553278 ARL4CP56559 192 aa6.84□□□□□ -1.31
SCFD1-208ENST00000553278 PER3P56645 1201 aa6.84□□□□□ -1.31
SCFD1-208ENST00000553278 NKX3-2P78367 333 aa6.84□□□□□ -1.31
SCFD1-208ENST00000553278 TARDBPQ13148 414 aaKnown RBP eCLIP6.84□□□□□ -1.31
SCFD1-208ENST00000553278 PFKFB4Q16877 469 aa6.84□□□□□ -1.31
SCFD1-208ENST00000553278 INTS11Q5TA45 600 aaKnown RBP6.84□□□□□ -1.31
SCFD1-208ENST00000553278 ETV3LQ6ZN32 361 aa6.84□□□□□ -1.31
SCFD1-208ENST00000553278 RFX8Q6ZV50 586 aa6.84□□□□□ -1.31
SCFD1-208ENST00000553278 BEND5Q7L4P6 421 aa6.84□□□□□ -1.31
SCFD1-208ENST00000553278 PROSER1Q86XN7 944 aa6.84□□□□□ -1.31
SCFD1-208ENST00000553278 PDILTQ8N807 584 aa6.84□□□□□ -1.31
SCFD1-208ENST00000553278 USP13Q92995 863 aaPredicted RBP6.84□□□□□ -1.31
SCFD1-208ENST00000553278 MUL1Q969V5 352 aa6.84□□□□□ -1.31
SCFD1-208ENST00000553278 OSBPL6Q9BZF3 934 aa6.84□□□□□ -1.31
SCFD1-208ENST00000553278 POLR3BQ9NW08 1133 aaPredicted RBP6.84□□□□□ -1.31
SCFD1-208ENST00000553278 CAMSAP3Q9P1Y5 1249 aaPredicted RBP6.84□□□□□ -1.31
SCFD1-208ENST00000553278 LRFN1Q9P244 771 aa6.84□□□□□ -1.31
SCFD1-208ENST00000553278 GJD2Q9UKL4 321 aa6.84□□□□□ -1.31
SCFD1-208ENST00000553278 PCDHA6Q9UN73 950 aa6.84□□□□□ -1.31
SCFD1-208ENST00000553278 SLC5A6Q9Y289 635 aa6.84□□□□□ -1.31
SCFD1-208ENST00000553278 PCDHA1Q9Y5I3 950 aa6.84□□□□□ -1.31
SCFD1-208ENST00000553278 A0A0A6YYK5 440 aaPredicted RBP6.83□□□□□ -1.32
SCFD1-208ENST00000553278 KRTAP9-6A0A140TA67 174 aa6.83□□□□□ -1.32
SCFD1-208ENST00000553278 A0A1W2PR48 441 aa6.83□□□□□ -1.32
SCFD1-208ENST00000553278 RRN3P2A6NIE6 340 aa6.83□□□□□ -1.32
SCFD1-208ENST00000553278 PRR19A6NJB7 356 aa6.83□□□□□ -1.32
SCFD1-208ENST00000553278 HNRNPDLO14979 420 aaKnown RBP6.83□□□□□ -1.32
SCFD1-208ENST00000553278 PRAMEF4O60810 478 aa6.83□□□□□ -1.32
SCFD1-208ENST00000553278 TMEM127O75204 238 aa6.83□□□□□ -1.32
SCFD1-208ENST00000553278 FSBPO95073 299 aa6.83□□□□□ -1.32
SCFD1-208ENST00000553278 HPXP02790 462 aa6.83□□□□□ -1.32
SCFD1-208ENST00000553278 PYGLP06737 847 aa6.83□□□□□ -1.32
SCFD1-208ENST00000553278 STAT5AP42229 794 aa6.83□□□□□ -1.32
SCFD1-208ENST00000553278 PRR5P85299 388 aa6.83□□□□□ -1.32
SCFD1-208ENST00000553278 TLE1Q04724 770 aa6.83□□□□□ -1.32
SCFD1-208ENST00000553278 SNAPC2Q13487 334 aa6.83□□□□□ -1.32
SCFD1-208ENST00000553278 STILQ15468 1287 aa6.83□□□□□ -1.32
SCFD1-208ENST00000553278 SKIDA1Q1XH10 827 aa6.83□□□□□ -1.32
SCFD1-208ENST00000553278 KANK2Q63ZY3 851 aa6.83□□□□□ -1.32
SCFD1-208ENST00000553278 DPP8Q6V1X1 898 aaPredicted RBP6.83□□□□□ -1.32
SCFD1-208ENST00000553278 ZC3H18Q86VM9 953 aaKnown RBP6.83□□□□□ -1.32
SCFD1-208ENST00000553278 AMIGO3Q86WK7 504 aa6.83□□□□□ -1.32
SCFD1-208ENST00000553278 ATG16L2Q8NAA4 619 aa6.83□□□□□ -1.32
SCFD1-208ENST00000553278 FANCBQ8NB91 859 aa6.83□□□□□ -1.32
SCFD1-208ENST00000553278 OR10H5Q8NGA6 315 aa6.83□□□□□ -1.32
SCFD1-208ENST00000553278 PPP1R14CQ8TAE6 165 aa6.83□□□□□ -1.32
SCFD1-208ENST00000553278 BCL7CQ8WUZ0 217 aaPredicted RBP6.83□□□□□ -1.32
SCFD1-208ENST00000553278 IQCDQ96DY2 449 aa6.83□□□□□ -1.32
SCFD1-208ENST00000553278 SOX7Q9BT81 388 aa6.83□□□□□ -1.32
SCFD1-208ENST00000553278 EIF2AQ9BY44 585 aaKnown RBP6.83□□□□□ -1.32
SCFD1-208ENST00000553278 MAGEH1Q9H213 219 aa6.83□□□□□ -1.32
SCFD1-208ENST00000553278 SACM1LQ9NTJ5 587 aa6.83□□□□□ -1.32
SCFD1-208ENST00000553278 DACT1Q9NYF0 836 aa6.83□□□□□ -1.32
SCFD1-208ENST00000553278 MYO1AQ9UBC5 1043 aa6.83□□□□□ -1.32
SCFD1-208ENST00000553278 GRHPRQ9UBQ7 328 aa6.83□□□□□ -1.32
SCFD1-208ENST00000553278 NRBP1Q9UHY1 535 aa6.83□□□□□ -1.32
SCFD1-208ENST00000553278 SLC39A10Q9ULF5 831 aa6.83□□□□□ -1.32
SCFD1-208ENST00000553278 KAT6BQ8WYB5 2073 aa6.82□□□□□ -1.32
SCFD1-208ENST00000553278 ADAM23O75077 832 aa6.82□□□□□ -1.32
SCFD1-208ENST00000553278 RNASEH2AO75792 299 aaKnown RBP6.82□□□□□ -1.32
SCFD1-208ENST00000553278 MPOP05164 745 aa6.82□□□□□ -1.32
SCFD1-208ENST00000553278 H2AFB1P0C5Y9 115 aa6.82□□□□□ -1.32
SCFD1-208ENST00000553278 H2AFB2P0C5Z0 115 aa6.82□□□□□ -1.32
SCFD1-208ENST00000553278 CD8BP10966 210 aa6.82□□□□□ -1.32
SCFD1-208ENST00000553278 RAC2P15153 192 aa6.82□□□□□ -1.32
SCFD1-208ENST00000553278 FGFR2P21802 821 aa6.82□□□□□ -1.32
SCFD1-208ENST00000553278 HOXA10P31260 410 aaPredicted RBP6.82□□□□□ -1.32
SCFD1-208ENST00000553278 SLC6A9P48067 706 aa6.82□□□□□ -1.32
SCFD1-208ENST00000553278 ERVFRD-1P60508 538 aa6.82□□□□□ -1.32
SCFD1-208ENST00000553278 KCTD2Q14681 263 aa6.82□□□□□ -1.32
SCFD1-208ENST00000553278 LIPIQ6XZB0 460 aa6.82□□□□□ -1.32
SCFD1-208ENST00000553278 CXXC5Q7LFL8 322 aaKnown RBP6.82□□□□□ -1.32
SCFD1-208ENST00000553278 OR6B3Q8NGW1 331 aa6.82□□□□□ -1.32
SCFD1-208ENST00000553278 CCHCR1Q8TD31 782 aa6.82□□□□□ -1.32
SCFD1-208ENST00000553278 SNX33Q8WV41 574 aa6.82□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms