RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 HSPA6P17066 643 aa5.82□□□□□ -1.48
LIMA1-212ENST00000552491 GAP43P17677 238 aa5.82□□□□□ -1.48
LIMA1-212ENST00000552491 PAX7P23759 505 aa5.82□□□□□ -1.48
LIMA1-212ENST00000552491 GCLMP48507 274 aa5.82□□□□□ -1.48
LIMA1-212ENST00000552491 ALDH5A1P51649 535 aaPredicted RBP5.82□□□□□ -1.48
LIMA1-212ENST00000552491 ZNF131P52739 623 aa5.82□□□□□ -1.48
LIMA1-212ENST00000552491 GPC5P78333 572 aa5.82□□□□□ -1.48
LIMA1-212ENST00000552491 MGAT5Q09328 741 aa5.82□□□□□ -1.48
LIMA1-212ENST00000552491 MYO1EQ12965 1108 aa5.82□□□□□ -1.48
LIMA1-212ENST00000552491 TNIP1Q15025 636 aa5.82□□□□□ -1.48
LIMA1-212ENST00000552491 MFSD5Q6N075 450 aa5.82□□□□□ -1.48
LIMA1-212ENST00000552491 CGB2Q6NT52 195 aa5.82□□□□□ -1.48
LIMA1-212ENST00000552491 SEPT14Q6ZU15 432 aa5.82□□□□□ -1.48
LIMA1-212ENST00000552491 NOP9Q86U38 636 aaKnown RBP5.82□□□□□ -1.48
LIMA1-212ENST00000552491 FBXO11Q86XK2 927 aa5.82□□□□□ -1.48
LIMA1-212ENST00000552491 SLC13A5Q86YT5 568 aaPredicted RBP5.82□□□□□ -1.48
LIMA1-212ENST00000552491 RHOT2Q8IXI1 618 aa5.82□□□□□ -1.48
LIMA1-212ENST00000552491 FAM178BQ8IXR5 827 aa5.82□□□□□ -1.48
LIMA1-212ENST00000552491 SPICE1Q8N0Z3 855 aa5.82□□□□□ -1.48
LIMA1-212ENST00000552491 CYP4X1Q8N118 509 aa5.82□□□□□ -1.48
LIMA1-212ENST00000552491 KCTD17Q8N5Z5 321 aa5.82□□□□□ -1.48
LIMA1-212ENST00000552491 DCAF4Q8WV16 495 aa5.82□□□□□ -1.48
LIMA1-212ENST00000552491 NSMCE1Q8WV22 266 aa5.82□□□□□ -1.48
LIMA1-212ENST00000552491 UPF1Q92900 1129 aaKnown RBP eCLIP5.82□□□□□ -1.48
LIMA1-212ENST00000552491 EBF2Q9HAK2 575 aa5.82□□□□□ -1.48
LIMA1-212ENST00000552491 SAMD15Q9P1V8 674 aa5.82□□□□□ -1.48
LIMA1-212ENST00000552491 RASAL2Q9UJF2 1139 aa5.82□□□□□ -1.48
LIMA1-212ENST00000552491 TMEM120BA0PK00 339 aa5.81□□□□□ -1.48
LIMA1-212ENST00000552491 MIF4GDA9UHW6 222 aaKnown RBP5.81□□□□□ -1.48
LIMA1-212ENST00000552491 IGF2BP3O00425 579 aaKnown RBP eCLIP5.81□□□□□ -1.48
LIMA1-212ENST00000552491 PODXLO00592 558 aa5.81□□□□□ -1.48
LIMA1-212ENST00000552491 HGSO14964 777 aaPredicted RBP5.81□□□□□ -1.48
LIMA1-212ENST00000552491 CLDN3O15551 220 aa5.81□□□□□ -1.48
LIMA1-212ENST00000552491 EXOC3O60645 756 aa5.81□□□□□ -1.48
LIMA1-212ENST00000552491 RTN2O75298 545 aa5.81□□□□□ -1.48
LIMA1-212ENST00000552491 ANP32DO95626 131 aa5.81□□□□□ -1.48
LIMA1-212ENST00000552491 SERPINB2P05120 415 aa5.81□□□□□ -1.48
LIMA1-212ENST00000552491 KRT16P08779 473 aa5.81□□□□□ -1.48
LIMA1-212ENST00000552491 ALADP13716 330 aa5.81□□□□□ -1.48
LIMA1-212ENST00000552491 NQO1P15559 274 aaKnown RBP5.81□□□□□ -1.48
LIMA1-212ENST00000552491 CDC25CP30307 473 aa5.81□□□□□ -1.48
LIMA1-212ENST00000552491 ZNF76P36508 570 aa5.81□□□□□ -1.48
LIMA1-212ENST00000552491 CLNS1AP54105 237 aaKnown RBP5.81□□□□□ -1.48
LIMA1-212ENST00000552491 ZNF268Q14587 947 aaPredicted RBP5.81□□□□□ -1.48
LIMA1-212ENST00000552491 RRP1BQ14684 758 aaKnown RBP5.81□□□□□ -1.48
LIMA1-212ENST00000552491 CERKLQ49MI3 558 aaPredicted RBP5.81□□□□□ -1.48
LIMA1-212ENST00000552491 ODR4Q5SWX8 454 aa5.81□□□□□ -1.48
LIMA1-212ENST00000552491 RHBDF2Q6PJF5 856 aa5.81□□□□□ -1.48
LIMA1-212ENST00000552491 BTNL9Q6UXG8 535 aa5.81□□□□□ -1.48
LIMA1-212ENST00000552491 NSMFQ6X4W1 530 aa5.81□□□□□ -1.48
LIMA1-212ENST00000552491 MAEAQ7L5Y9 396 aa5.81□□□□□ -1.48
LIMA1-212ENST00000552491 HS2ST1Q7LGA3 356 aa5.81□□□□□ -1.48
LIMA1-212ENST00000552491 SLC47A2Q86VL8 602 aa5.81□□□□□ -1.48
LIMA1-212ENST00000552491 CCDC105Q8IYK2 499 aa5.81□□□□□ -1.48
LIMA1-212ENST00000552491 FITM2Q8N6M3 262 aa5.81□□□□□ -1.48
LIMA1-212ENST00000552491 EPS8L1Q8TE68 723 aa5.81□□□□□ -1.48
LIMA1-212ENST00000552491 C1orf54Q8WWF1 131 aa5.81□□□□□ -1.48
LIMA1-212ENST00000552491 ARHGEF2Q92974 986 aaKnown RBP5.81□□□□□ -1.48
LIMA1-212ENST00000552491 FAXDC2Q96IV6 333 aa5.81□□□□□ -1.48
LIMA1-212ENST00000552491 RMDN2Q96LZ7 410 aa5.81□□□□□ -1.48
LIMA1-212ENST00000552491 KREMEN1Q96MU8 473 aa5.81□□□□□ -1.48
LIMA1-212ENST00000552491 CBWD1Q9BRT8 395 aa5.81□□□□□ -1.48
LIMA1-212ENST00000552491 STRA6Q9BX79 667 aa5.81□□□□□ -1.48
LIMA1-212ENST00000552491 TRIM7Q9C029 511 aa5.81□□□□□ -1.48
LIMA1-212ENST00000552491 ECT2Q9H8V3 914 aa5.81□□□□□ -1.48
LIMA1-212ENST00000552491 LRRC4BQ9NT99 713 aa5.81□□□□□ -1.48
LIMA1-212ENST00000552491 NYAP2Q9P242 653 aa5.81□□□□□ -1.48
LIMA1-212ENST00000552491 PARP2Q9UGN5 583 aa5.81□□□□□ -1.48
LIMA1-212ENST00000552491 NOCTQ9UK39 431 aaKnown RBP5.81□□□□□ -1.48
LIMA1-212ENST00000552491 FRMD4BQ9Y2L6 1034 aa5.81□□□□□ -1.48
LIMA1-212ENST00000552491 A0A1W2PRG0 241 aa5.81□□□□□ -1.48
LIMA1-212ENST00000552491 SKAP2O75563 359 aaPredicted RBP5.81□□□□□ -1.48
LIMA1-212ENST00000552491 BBOX1O75936 387 aa5.81□□□□□ -1.48
LIMA1-212ENST00000552491 HLA-DOAP06340 250 aa5.81□□□□□ -1.48
LIMA1-212ENST00000552491 CYP3A4P08684 503 aa5.81□□□□□ -1.48
LIMA1-212ENST00000552491 DLATP10515 647 aaKnown RBP5.81□□□□□ -1.48
LIMA1-212ENST00000552491 GYS1P13807 737 aa5.81□□□□□ -1.48
LIMA1-212ENST00000552491 IVDP26440 423 aa5.81□□□□□ -1.48
LIMA1-212ENST00000552491 ADCY1Q08828 1119 aa5.81□□□□□ -1.48
LIMA1-212ENST00000552491 BNIP1Q12981 228 aa5.81□□□□□ -1.48
LIMA1-212ENST00000552491 IKQ13123 557 aaPredicted RBP5.81□□□□□ -1.48
LIMA1-212ENST00000552491 RIPK1Q13546 671 aa5.81□□□□□ -1.48
LIMA1-212ENST00000552491 SNX1Q13596 522 aa5.81□□□□□ -1.48
LIMA1-212ENST00000552491 TCEAL1Q15170 157 aa5.81□□□□□ -1.48
LIMA1-212ENST00000552491 PPP2R5AQ15172 486 aa5.81□□□□□ -1.48
LIMA1-212ENST00000552491 TRIP13Q15645 432 aaPredicted RBP5.81□□□□□ -1.48
LIMA1-212ENST00000552491 ZKSCAN8Q15776 578 aaPredicted RBP5.81□□□□□ -1.48
LIMA1-212ENST00000552491 EPC2Q52LR7 807 aa5.81□□□□□ -1.48
LIMA1-212ENST00000552491 SEL1L2Q5TEA6 688 aa5.81□□□□□ -1.48
LIMA1-212ENST00000552491 SYDE2Q5VT97 1194 aa5.81□□□□□ -1.48
LIMA1-212ENST00000552491 LRCH2Q5VUJ6 765 aa5.81□□□□□ -1.48
LIMA1-212ENST00000552491 CRELD2Q6UXH1 353 aaPredicted RBP5.81□□□□□ -1.48
LIMA1-212ENST00000552491 MIGA2Q7L4E1 593 aa5.81□□□□□ -1.48
LIMA1-212ENST00000552491 PRUNE1Q86TP1 453 aa5.81□□□□□ -1.48
LIMA1-212ENST00000552491 UBL4BQ8N7F7 174 aa5.81□□□□□ -1.48
LIMA1-212ENST00000552491 ANKRD42Q8N9B4 389 aa5.81□□□□□ -1.48
LIMA1-212ENST00000552491 GDAP1Q8TB36 358 aa5.81□□□□□ -1.48
LIMA1-212ENST00000552491 PSPC1Q8WXF1 523 aaKnown RBP5.81□□□□□ -1.48
LIMA1-212ENST00000552491 ATG4AQ8WYN0 398 aa5.81□□□□□ -1.48
LIMA1-212ENST00000552491 RBM17Q96I25 401 aaKnown RBP5.81□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms