RNA–Protein interactions for RNA: ENST00000544989.1

HDAC4-216, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 342 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-216ENST00000544989 DZANK1Q9NVP4 752 aa12.96□□□□□ -0.33
HDAC4-216ENST00000544989 SNTG2Q9NY99 539 aa12.96□□□□□ -0.33
HDAC4-216ENST00000544989 DPP7Q9UHL4 492 aa12.96□□□□□ -0.33
HDAC4-216ENST00000544989 ATG2AQ2TAZ0 1938 aa12.96□□□□□ -0.34
HDAC4-216ENST00000544989 HIDE1A8MVS5 230 aa12.95□□□□□ -0.34
HDAC4-216ENST00000544989 PER2O15055 1255 aa12.95□□□□□ -0.34
HDAC4-216ENST00000544989 SPTLC2O15270 562 aa12.95□□□□□ -0.34
HDAC4-216ENST00000544989 PPP6R2O75170 966 aa12.95□□□□□ -0.34
HDAC4-216ENST00000544989 TBX10O75333 385 aa12.95□□□□□ -0.34
HDAC4-216ENST00000544989 RECQL4O94761 1208 aa12.95□□□□□ -0.34
HDAC4-216ENST00000544989 BRD1O95696 1058 aa12.95□□□□□ -0.34
HDAC4-216ENST00000544989 C1RP00736 705 aa12.95□□□□□ -0.34
HDAC4-216ENST00000544989 SOD2P04179 222 aa12.95□□□□□ -0.34
HDAC4-216ENST00000544989 URODP06132 367 aa12.95□□□□□ -0.34
HDAC4-216ENST00000544989 ZSCAN22P10073 491 aaPredicted RBP12.95□□□□□ -0.34
HDAC4-216ENST00000544989 MAPTP10636 758 aaKnown RBP12.95□□□□□ -0.34
HDAC4-216ENST00000544989 GRM5P41594 1212 aa12.95□□□□□ -0.34
HDAC4-216ENST00000544989 AFF1P51825 1210 aaKnown RBP12.95□□□□□ -0.34
HDAC4-216ENST00000544989 NCKAP1LP55160 1127 aa12.95□□□□□ -0.34
HDAC4-216ENST00000544989 RAD51AP2Q09MP3 1159 aa12.95□□□□□ -0.34
HDAC4-216ENST00000544989 ELAVL2Q12926 359 aaKnown RBP12.95□□□□□ -0.34
HDAC4-216ENST00000544989 MCM6Q14566 821 aa12.95□□□□□ -0.34
HDAC4-216ENST00000544989 ARSHQ5FYA8 562 aa12.95□□□□□ -0.34
HDAC4-216ENST00000544989 SV2BQ7L1I2 683 aa12.95□□□□□ -0.34
HDAC4-216ENST00000544989 ADHFE1Q8IWW8 467 aa12.95□□□□□ -0.34
HDAC4-216ENST00000544989 FAM178BQ8IXR5 827 aa12.95□□□□□ -0.34
HDAC4-216ENST00000544989 MYCT1Q8N699 235 aa12.95□□□□□ -0.34
HDAC4-216ENST00000544989 LINC00301Q8NCQ3 95 aa12.95□□□□□ -0.34
HDAC4-216ENST00000544989 GSTCDQ8NEC7 633 aa12.95□□□□□ -0.34
HDAC4-216ENST00000544989 EPSTI1Q96J88 318 aa12.95□□□□□ -0.34
HDAC4-216ENST00000544989 UROC1Q96N76 676 aa12.95□□□□□ -0.34
HDAC4-216ENST00000544989 REEP2Q9BRK0 252 aa12.95□□□□□ -0.34
HDAC4-216ENST00000544989 HERC2P3Q9BVR0 1158 aa12.95□□□□□ -0.34
HDAC4-216ENST00000544989 LRRC27Q9C0I9 530 aa12.95□□□□□ -0.34
HDAC4-216ENST00000544989 POLD4Q9HCU8 107 aa12.95□□□□□ -0.34
HDAC4-216ENST00000544989 PTPRHQ9HD43 1115 aa12.95□□□□□ -0.34
HDAC4-216ENST00000544989 SLC38A7Q9NVC3 462 aa12.95□□□□□ -0.34
HDAC4-216ENST00000544989 CLEC1BQ9P126 229 aa12.95□□□□□ -0.34
HDAC4-216ENST00000544989 PRG3Q9Y2Y8 225 aaPredicted RBP12.95□□□□□ -0.34
HDAC4-216ENST00000544989 PCDHGC5Q9Y5F6 944 aa12.95□□□□□ -0.34
HDAC4-216ENST00000544989 TTLL13PA6NNM8 815 aa12.94□□□□□ -0.34
HDAC4-216ENST00000544989 SFI1A8K8P3 1242 aa12.94□□□□□ -0.34
HDAC4-216ENST00000544989 LINC01565O15544 149 aa12.94□□□□□ -0.34
HDAC4-216ENST00000544989 MBTPS2O43462 519 aa12.94□□□□□ -0.34
HDAC4-216ENST00000544989 GPR37L1O60883 481 aa12.94□□□□□ -0.34
HDAC4-216ENST00000544989 GLP2RO95838 553 aa12.94□□□□□ -0.34
HDAC4-216ENST00000544989 PROZP22891 400 aa12.94□□□□□ -0.34
HDAC4-216ENST00000544989 GRIN1Q05586 938 aa12.94□□□□□ -0.34
HDAC4-216ENST00000544989 ITIH3Q06033 890 aa12.94□□□□□ -0.34
HDAC4-216ENST00000544989 DLX2Q07687 328 aaPredicted RBP12.94□□□□□ -0.34
HDAC4-216ENST00000544989 KCNC3Q14003 757 aa12.94□□□□□ -0.34
HDAC4-216ENST00000544989 DHX8Q14562 1220 aaKnown RBP12.94□□□□□ -0.34
HDAC4-216ENST00000544989 HSP90AA2PQ14568 343 aaPredicted RBP12.94□□□□□ -0.34
HDAC4-216ENST00000544989 NOLC1Q14978 699 aaKnown RBP eCLIP12.94□□□□□ -0.34
HDAC4-216ENST00000544989 PTPN14Q15678 1187 aa12.94□□□□□ -0.34
HDAC4-216ENST00000544989 EEF1DP3Q658K8 133 aa12.94□□□□□ -0.34
HDAC4-216ENST00000544989 KIAA1841Q6NSI8 718 aa12.94□□□□□ -0.34
HDAC4-216ENST00000544989 ANKRD54Q6NXT1 300 aa12.94□□□□□ -0.34
HDAC4-216ENST00000544989 FAM173BQ6P4H8 233 aa12.94□□□□□ -0.34
HDAC4-216ENST00000544989 TAS1R3Q7RTX0 852 aa12.94□□□□□ -0.34
HDAC4-216ENST00000544989 HAUS6Q7Z4H7 955 aa12.94□□□□□ -0.34
HDAC4-216ENST00000544989 TMEM173Q86WV6 379 aaPredicted RBP12.94□□□□□ -0.34
HDAC4-216ENST00000544989 KCNG4Q8TDN1 519 aa12.94□□□□□ -0.34
HDAC4-216ENST00000544989 BICD1Q96G01 975 aa12.94□□□□□ -0.34
HDAC4-216ENST00000544989 ACAP3Q96P50 834 aa12.94□□□□□ -0.34
HDAC4-216ENST00000544989 TARS2Q9BW92 718 aaKnown RBP12.94□□□□□ -0.34
HDAC4-216ENST00000544989 CDT1Q9H211 546 aa12.94□□□□□ -0.34
HDAC4-216ENST00000544989 CUEDC2Q9H467 287 aa12.94□□□□□ -0.34
HDAC4-216ENST00000544989 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP12.94□□□□□ -0.34
HDAC4-216ENST00000544989 MIOSQ9NXC5 875 aa12.94□□□□□ -0.34
HDAC4-216ENST00000544989 KLK14Q9P0G3 267 aa12.94□□□□□ -0.34
HDAC4-216ENST00000544989 SEL1LQ9UBV2 794 aa12.94□□□□□ -0.34
HDAC4-216ENST00000544989 ADAM28Q9UKQ2 775 aa12.94□□□□□ -0.34
HDAC4-216ENST00000544989 CFAP45Q9UL16 551 aa12.94□□□□□ -0.34
HDAC4-216ENST00000544989 GDAQ9Y2T3 454 aa12.94□□□□□ -0.34
HDAC4-216ENST00000544989 SF3B1O75533 1304 aaKnown RBP eCLIP12.93□□□□□ -0.343e-6■■■■■ 134.5
HDAC4-216ENST00000544989 MYH11P35749 1972 aa12.93□□□□□ -0.34
HDAC4-216ENST00000544989 K7ENM7 598 aa12.93□□□□□ -0.34
HDAC4-216ENST00000544989 CLDN3O15551 220 aa12.93□□□□□ -0.34
HDAC4-216ENST00000544989 TRAK2O60296 914 aa12.93□□□□□ -0.34
HDAC4-216ENST00000544989 B4GALT3O60512 393 aa12.93□□□□□ -0.34
HDAC4-216ENST00000544989 CLASP2O75122 1294 aaKnown RBP12.93□□□□□ -0.34
HDAC4-216ENST00000544989 TADA2AO75478 443 aa12.93□□□□□ -0.34
HDAC4-216ENST00000544989 F13A1P00488 732 aa12.93□□□□□ -0.34
HDAC4-216ENST00000544989 ADH1AP07327 375 aa12.93□□□□□ -0.34
HDAC4-216ENST00000544989 IL9P15248 144 aa12.93□□□□□ -0.34
HDAC4-216ENST00000544989 GAP43P17677 238 aa12.93□□□□□ -0.34
HDAC4-216ENST00000544989 STAT6P42226 847 aa12.93□□□□□ -0.34
HDAC4-216ENST00000544989 GLUD2P49448 558 aa12.93□□□□□ -0.34
HDAC4-216ENST00000544989 USP41Q3LFD5 358 aa12.93□□□□□ -0.34
HDAC4-216ENST00000544989 CES5AQ6NT32 575 aa12.93□□□□□ -0.34
HDAC4-216ENST00000544989 PDXDC1Q6P996 788 aa12.93□□□□□ -0.34
HDAC4-216ENST00000544989 GJD3Q8N144 294 aa12.93□□□□□ -0.34
HDAC4-216ENST00000544989 BCL7CQ8WUZ0 217 aaPredicted RBP12.93□□□□□ -0.34
HDAC4-216ENST00000544989 HVCN1Q96D96 273 aa12.93□□□□□ -0.34
HDAC4-216ENST00000544989 DDX27Q96GQ7 796 aaKnown RBP12.93□□□□□ -0.34
HDAC4-216ENST00000544989 CLIC6Q96NY7 704 aa12.93□□□□□ -0.34
HDAC4-216ENST00000544989 TSPAN18Q96SJ8 248 aa12.93□□□□□ -0.34
HDAC4-216ENST00000544989 ST6GALNAC4Q9H4F1 302 aa12.93□□□□□ -0.34
HDAC4-216ENST00000544989 MARCH5Q9NX47 278 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms