RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 DEFB103AP81534 67 aa19.1■□□□□ 0.65
CLSTN3-210ENST00000540931 TCTN1Q2MV58 587 aa19.1■□□□□ 0.65
CLSTN3-210ENST00000540931 SMG8Q8ND04 991 aaKnown RBP19.1■□□□□ 0.65
CLSTN3-210ENST00000540931 RPS6KC1Q96S38 1066 aa19.1■□□□□ 0.65
CLSTN3-210ENST00000540931 EIF2AQ9BY44 585 aaKnown RBP19.1■□□□□ 0.65
CLSTN3-210ENST00000540931 SLC38A7Q9NVC3 462 aa19.1■□□□□ 0.65
CLSTN3-210ENST00000540931 STK39Q9UEW8 545 aa19.1■□□□□ 0.65
CLSTN3-210ENST00000540931 PARP2Q9UGN5 583 aa19.1■□□□□ 0.65
CLSTN3-210ENST00000540931 SPTBN5Q9NRC6 3674 aaKnown RBP19.1■□□□□ 0.65
CLSTN3-210ENST00000540931 PRUNE2Q8WUY3 3088 aa19.1■□□□□ 0.65
CLSTN3-210ENST00000540931 COL4A6Q14031 1691 aa19.09■□□□□ 0.65
CLSTN3-210ENST00000540931 EXTL3O43909 919 aa19.09■□□□□ 0.65
CLSTN3-210ENST00000540931 IL18RAPO95256 599 aa19.09■□□□□ 0.65
CLSTN3-210ENST00000540931 FGFR1OPO95684 399 aaKnown RBP19.09■□□□□ 0.65
CLSTN3-210ENST00000540931 EEF1DP3Q658K8 133 aa19.09■□□□□ 0.65
CLSTN3-210ENST00000540931 ZBTB33Q86T24 672 aa19.09■□□□□ 0.65
CLSTN3-210ENST00000540931 NT5DC4Q86YG4 428 aa19.09■□□□□ 0.65
CLSTN3-210ENST00000540931 ADSSL1Q8N142 457 aa19.09■□□□□ 0.65
CLSTN3-210ENST00000540931 LRRC43Q8N309 656 aa19.09■□□□□ 0.65
CLSTN3-210ENST00000540931 GPD1LQ8N335 351 aa19.09■□□□□ 0.65
CLSTN3-210ENST00000540931 RNF169Q8NCN4 708 aa19.09■□□□□ 0.65
CLSTN3-210ENST00000540931 HPS3Q969F9 1004 aa19.09■□□□□ 0.65
CLSTN3-210ENST00000540931 ZNF689Q96CS4 500 aaPredicted RBP19.09■□□□□ 0.65
CLSTN3-210ENST00000540931 ASB7Q9H672 318 aa19.09■□□□□ 0.65
CLSTN3-210ENST00000540931 RPF1Q9H9Y2 349 aaKnown RBP19.09■□□□□ 0.65
CLSTN3-210ENST00000540931 AGPAT3Q9NRZ7 376 aa19.09■□□□□ 0.65
CLSTN3-210ENST00000540931 CDH23Q9H251 3354 aa19.09■□□□□ 0.65
CLSTN3-210ENST00000540931 ABLIM1O14639 778 aa19.08■□□□□ 0.64
CLSTN3-210ENST00000540931 MAPK13O15264 365 aa19.08■□□□□ 0.64
CLSTN3-210ENST00000540931 PRKCSHP14314 528 aaPredicted RBP19.08■□□□□ 0.64
CLSTN3-210ENST00000540931 ENPEPQ07075 957 aa19.08■□□□□ 0.64
CLSTN3-210ENST00000540931 BTG3Q14201 252 aaPredicted RBP19.08■□□□□ 0.64
CLSTN3-210ENST00000540931 NOMO2Q5JPE7 1267 aa19.08■□□□□ 0.64
CLSTN3-210ENST00000540931 CENPPQ6IPU0 288 aa19.08■□□□□ 0.64
CLSTN3-210ENST00000540931 NELFCDQ8IXH7 590 aa19.08■□□□□ 0.64
CLSTN3-210ENST00000540931 THNSL1Q8IYQ7 743 aa19.08■□□□□ 0.64
CLSTN3-210ENST00000540931 XXYLT1Q8NBI6 393 aa19.08■□□□□ 0.64
CLSTN3-210ENST00000540931 MYLIPQ8WY64 445 aa19.08■□□□□ 0.64
CLSTN3-210ENST00000540931 FAM193BQ96PV7 902 aaPredicted RBP19.08■□□□□ 0.64
CLSTN3-210ENST00000540931 KCTD10Q9H3F6 313 aa19.08■□□□□ 0.64
CLSTN3-210ENST00000540931 FRMD4BQ9Y2L6 1034 aa19.08■□□□□ 0.64
CLSTN3-210ENST00000540931 GDAQ9Y2T3 454 aa19.08■□□□□ 0.64
CLSTN3-210ENST00000540931 DERAQ9Y315 318 aa19.08■□□□□ 0.64
CLSTN3-210ENST00000540931 ZNF233A6NK53 670 aa19.07■□□□□ 0.64
CLSTN3-210ENST00000540931 TTLL13PA6NNM8 815 aa19.07■□□□□ 0.64
CLSTN3-210ENST00000540931 EDN1P05305 212 aa19.07■□□□□ 0.64
CLSTN3-210ENST00000540931 ATF7P17544 494 aaPredicted RBP19.07■□□□□ 0.64
CLSTN3-210ENST00000540931 PAX3P23760 479 aa19.07■□□□□ 0.64
CLSTN3-210ENST00000540931 CCNE1P24864 410 aa19.07■□□□□ 0.64
CLSTN3-210ENST00000540931 PRCPP42785 496 aa19.07■□□□□ 0.64
CLSTN3-210ENST00000540931 NLRP12P59046 1061 aa19.07■□□□□ 0.64
CLSTN3-210ENST00000540931 FKBP3Q00688 224 aaKnown RBP19.07■□□□□ 0.64
CLSTN3-210ENST00000540931 PPP2R3AQ06190 1150 aa19.07■□□□□ 0.64
CLSTN3-210ENST00000540931 KCNA1Q09470 495 aa19.07■□□□□ 0.64
CLSTN3-210ENST00000540931 AGMOQ6ZNB7 445 aa19.07■□□□□ 0.64
CLSTN3-210ENST00000540931 FIBCD1Q8N539 461 aa19.07■□□□□ 0.64
CLSTN3-210ENST00000540931 SP7Q8TDD2 431 aaPredicted RBP19.07■□□□□ 0.64
CLSTN3-210ENST00000540931 FGFBP2Q9BYJ0 223 aa19.07■□□□□ 0.64
CLSTN3-210ENST00000540931 NXF3Q9H4D5 531 aaKnown RBP19.07■□□□□ 0.64
CLSTN3-210ENST00000540931 ANO10Q9NW15 660 aa19.07■□□□□ 0.64
CLSTN3-210ENST00000540931 SNTG2Q9NY99 539 aa19.07■□□□□ 0.64
CLSTN3-210ENST00000540931 CPSF3Q9UKF6 684 aaKnown RBP19.07■□□□□ 0.64
CLSTN3-210ENST00000540931 ARL5CA6NH57 179 aa19.06■□□□□ 0.64
CLSTN3-210ENST00000540931 ANKRD63C9JTQ0 380 aa19.06■□□□□ 0.64
CLSTN3-210ENST00000540931 CETN3O15182 167 aa19.06■□□□□ 0.64
CLSTN3-210ENST00000540931 TGFB1I1O43294 461 aa19.06■□□□□ 0.64
CLSTN3-210ENST00000540931 OFD1O75665 1012 aa19.06■□□□□ 0.64
CLSTN3-210ENST00000540931 RECQL4O94761 1208 aa19.06■□□□□ 0.64
CLSTN3-210ENST00000540931 CAVIN2O95810 425 aa19.06■□□□□ 0.64
CLSTN3-210ENST00000540931 THP07101 528 aa19.06■□□□□ 0.64
CLSTN3-210ENST00000540931 ERCC5P28715 1186 aaPredicted RBP19.06■□□□□ 0.64
CLSTN3-210ENST00000540931 ADSSP30520 456 aa19.06■□□□□ 0.64
CLSTN3-210ENST00000540931 RNASELQ05823 741 aaKnown RBP19.06■□□□□ 0.64
CLSTN3-210ENST00000540931 GRIK3Q13003 919 aa19.06■□□□□ 0.64
CLSTN3-210ENST00000540931 NFKBIBQ15653 356 aa19.06■□□□□ 0.64
CLSTN3-210ENST00000540931 CAVIN1Q6NZI2 390 aaKnown RBP19.06■□□□□ 0.64
CLSTN3-210ENST00000540931 SLC39A4Q6P5W5 647 aa19.06■□□□□ 0.64
CLSTN3-210ENST00000540931 CDR2LQ86X02 465 aaPredicted RBP19.06■□□□□ 0.64
CLSTN3-210ENST00000540931 P2RX5Q93086 422 aa19.06■□□□□ 0.64
CLSTN3-210ENST00000540931 ZBTB45Q96K62 511 aaPredicted RBP19.06■□□□□ 0.64
CLSTN3-210ENST00000540931 FBXL18Q96ME1 805 aa19.06■□□□□ 0.64
CLSTN3-210ENST00000540931 MKNK1Q9BUB5 465 aa19.06■□□□□ 0.64
CLSTN3-210ENST00000540931 NAT10Q9H0A0 1025 aaKnown RBP19.06■□□□□ 0.64
CLSTN3-210ENST00000540931 SLC28A3Q9HAS3 691 aa19.06■□□□□ 0.64
CLSTN3-210ENST00000540931 HSPBP1Q9NZL4 362 aa19.06■□□□□ 0.64
CLSTN3-210ENST00000540931 TBKBP1A7MCY6 615 aa19.05■□□□□ 0.64
CLSTN3-210ENST00000540931 BIN1O00499 593 aa19.05■□□□□ 0.64
CLSTN3-210ENST00000540931 EXOC3O60645 756 aa19.05■□□□□ 0.64
CLSTN3-210ENST00000540931 ADRB2P07550 413 aa19.05■□□□□ 0.64
CLSTN3-210ENST00000540931 HARSP12081 509 aaKnown RBP19.05■□□□□ 0.64
CLSTN3-210ENST00000540931 KCNE1P15382 129 aa19.05■□□□□ 0.64
CLSTN3-210ENST00000540931 LAG3P18627 525 aa19.05■□□□□ 0.64
CLSTN3-210ENST00000540931 HOXD13P35453 343 aa19.05■□□□□ 0.64
CLSTN3-210ENST00000540931 PPM1AP35813 382 aa19.05■□□□□ 0.64
CLSTN3-210ENST00000540931 PAK1Q13153 545 aa19.05■□□□□ 0.64
CLSTN3-210ENST00000540931 XKR4Q5GH76 650 aa19.05■□□□□ 0.64
CLSTN3-210ENST00000540931 GLIS3Q8NEA6 775 aa19.05■□□□□ 0.64
CLSTN3-210ENST00000540931 HELQQ8TDG4 1101 aa19.05■□□□□ 0.64
CLSTN3-210ENST00000540931 CACTINQ8WUQ7 758 aaKnown RBP19.05■□□□□ 0.64
CLSTN3-210ENST00000540931 ERCC4Q92889 916 aaPredicted RBP19.05■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms