RNA–Protein interactions for RNA: ENST00000540738.3

COLCA1-204, Transcript of colorectal cancer associated 1, humanhuman

TSL 1 (best)

Gene COLCA1, Length 5,537 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COLCA1-204ENST00000540738 SIK2Q9H0K1 926 aa15.13■□□□□ 0.01
COLCA1-204ENST00000540738 SFSWAPQ12872 951 aaKnown RBP15.13■□□□□ 0.01
COLCA1-204ENST00000540738 BRD3Q15059 726 aa15.13■□□□□ 0.01
COLCA1-204ENST00000540738 SHC4Q6S5L8 630 aa15.13■□□□□ 0.01
COLCA1-204ENST00000540738 BPIFA3Q9BQP9 254 aa15.13■□□□□ 0.01
COLCA1-204ENST00000540738 MKNK1Q9BUB5 465 aa15.13■□□□□ 0.01
COLCA1-204ENST00000540738 RIOX1Q9H6W3 641 aa15.13■□□□□ 0.01
COLCA1-204ENST00000540738 RNF40O75150 1001 aa15.13■□□□□ 0.01
COLCA1-204ENST00000540738 ALDH5A1P51649 535 aaPredicted RBP15.13■□□□□ 0.01
COLCA1-204ENST00000540738 NR1H3Q13133 447 aa15.13■□□□□ 0.01
COLCA1-204ENST00000540738 PTF1AQ7RTS3 328 aa15.13■□□□□ 0.01
COLCA1-204ENST00000540738 MYLK4Q86YV6 388 aaPredicted RBP15.13■□□□□ 0.01
COLCA1-204ENST00000540738 RIOX2Q8IUF8 465 aa15.13■□□□□ 0.01
COLCA1-204ENST00000540738 PARVAQ9NVD7 372 aa15.13■□□□□ 0.01
COLCA1-204ENST00000540738 MFAP3LO75121 409 aa15.12■□□□□ 0.01
COLCA1-204ENST00000540738 FSCN1Q16658 493 aaKnown RBP15.12■□□□□ 0.01
COLCA1-204ENST00000540738 LMBRD2Q68DH5 695 aaPredicted RBP15.12■□□□□ 0.01
COLCA1-204ENST00000540738 ILDR1Q86SU0 546 aaPredicted RBP15.12■□□□□ 0.01
COLCA1-204ENST00000540738 ARHGAP24Q8N264 748 aa15.12■□□□□ 0.01
COLCA1-204ENST00000540738 ATP8B4Q8TF62 1192 aa15.12■□□□□ 0.01
COLCA1-204ENST00000540738 RILPQ96NA2 401 aa15.12■□□□□ 0.01
COLCA1-204ENST00000540738 WDR18Q9BV38 432 aa15.12■□□□□ 0.01
COLCA1-204ENST00000540738 ADGRB2O60241 1585 aa15.12■□□□□ 0.01
COLCA1-204ENST00000540738 NPM3O75607 178 aaKnown RBP15.12■□□□□ 0.01
COLCA1-204ENST00000540738 KCNQ5Q9NR82 932 aa15.12■□□□□ 0.01
COLCA1-204ENST00000540738 SPTLC3Q9NUV7 552 aa15.12■□□□□ 0.01
COLCA1-204ENST00000540738 DSEQ9UL01 958 aa15.12■□□□□ 0.01
COLCA1-204ENST00000540738 NPHP3-ACAD11A0A0J9YXS1 232 aa15.12■□□□□ 0.01
COLCA1-204ENST00000540738 DDX53Q86TM3 631 aaKnown RBP15.12■□□□□ 0.01
COLCA1-204ENST00000540738 UBE2Q2Q8WVN8 375 aa15.12■□□□□ 0.01
COLCA1-204ENST00000540738 C18orf8Q96DM3 657 aa15.12■□□□□ 0.01
COLCA1-204ENST00000540738 PLEKHA5Q9HAU0 1116 aa15.12■□□□□ 0.01
COLCA1-204ENST00000540738 SLC35F6Q8N357 371 aa15.12■□□□□ 0.01
COLCA1-204ENST00000540738 TARS2Q9BW92 718 aaKnown RBP15.12■□□□□ 0.01
COLCA1-204ENST00000540738 MRPL9Q9BYD2 267 aaKnown RBP15.12■□□□□ 0.01
COLCA1-204ENST00000540738 PLEKHA4Q9H4M7 779 aa15.12■□□□□ 0.01
COLCA1-204ENST00000540738 GOLGA8QA0A0J9YX86 632 aa15.12■□□□□ 0.01
COLCA1-204ENST00000540738 GOLGA8OA6NCC3 632 aa15.12■□□□□ 0.01
COLCA1-204ENST00000540738 GOLGA8NF8WBI6 632 aa15.12■□□□□ 0.01
COLCA1-204ENST00000540738 OGTO15294 1046 aa15.12■□□□□ 0.01
COLCA1-204ENST00000540738 FTCDO95954 541 aa15.12■□□□□ 0.01
COLCA1-204ENST00000540738 CATSPERGQ6ZRH7 1159 aa15.12■□□□□ 0.01
COLCA1-204ENST00000540738 DEFB128Q7Z7B8 93 aa15.12■□□□□ 0.01
COLCA1-204ENST00000540738 DDX4Q9NQI0 724 aaKnown RBP15.12■□□□□ 0.01
COLCA1-204ENST00000540738 CLCN3P51790 818 aa15.11■□□□□ 0.01
COLCA1-204ENST00000540738 MFSD10Q14728 455 aa15.11■□□□□ 0.01
COLCA1-204ENST00000540738 TDRD10Q5VZ19 366 aaKnown RBP15.11■□□□□ 0.01
COLCA1-204ENST00000540738 NIPA1Q7RTP0 329 aa15.11■□□□□ 0.01
COLCA1-204ENST00000540738 DDX27Q96GQ7 796 aaKnown RBP15.11■□□□□ 0.01
COLCA1-204ENST00000540738 WNK4Q96J92 1243 aa15.11■□□□□ 0.01
COLCA1-204ENST00000540738 CDC23Q9UJX2 597 aa15.11■□□□□ 0.01
COLCA1-204ENST00000540738 DDX52Q9Y2R4 599 aaKnown RBP eCLIP15.11■□□□□ 0.01
COLCA1-204ENST00000540738 FAM205CA6NFA0 338 aa15.11■□□□□ 0.01
COLCA1-204ENST00000540738 IRF6O14896 467 aa15.11■□□□□ 0.01
COLCA1-204ENST00000540738 P4HA2O15460 535 aa15.11■□□□□ 0.01
COLCA1-204ENST00000540738 CYP2C19P33261 490 aa15.11■□□□□ 0.01
COLCA1-204ENST00000540738 Q4G0T1 1027 aa15.11■□□□□ 0.01
COLCA1-204ENST00000540738 ADGRA1Q86SQ6 560 aa15.11■□□□□ 0.01
COLCA1-204ENST00000540738 GLYCTKQ8IVS8 523 aa15.11■□□□□ 0.01
COLCA1-204ENST00000540738 C10orf67Q8IYJ2 551 aa15.11■□□□□ 0.01
COLCA1-204ENST00000540738 SMYD2Q9NRG4 433 aa15.11■□□□□ 0.01
COLCA1-204ENST00000540738 BCAP29Q9UHQ4 241 aa15.11■□□□□ 0.01
COLCA1-204ENST00000540738 APBA1Q02410 837 aa15.11■□□□□ 0.01
COLCA1-204ENST00000540738 PGM5Q15124 567 aa15.11■□□□□ 0.01
COLCA1-204ENST00000540738 CATSPER3Q86XQ3 398 aa15.11■□□□□ 0.01
COLCA1-204ENST00000540738 CDKL3Q8IVW4 592 aaPredicted RBP15.11■□□□□ 0.01
COLCA1-204ENST00000540738 ZNF564Q8TBZ8 553 aaPredicted RBP15.11■□□□□ 0.01
COLCA1-204ENST00000540738 N4BP2L2Q92802 583 aaPredicted RBP15.11■□□□□ 0.01
COLCA1-204ENST00000540738 APBA2Q99767 749 aa15.11■□□□□ 0.01
COLCA1-204ENST00000540738 PPP1R12CQ9BZL4 782 aa15.11■□□□□ 0.01
COLCA1-204ENST00000540738 DHX35Q9H5Z1 703 aaKnown RBP15.11■□□□□ 0.01
COLCA1-204ENST00000540738 LRRC53A6NM62 1247 aa15.11■□□□□ 0.01
COLCA1-204ENST00000540738 MSH2P43246 934 aa15.11■□□□□ 0.01
COLCA1-204ENST00000540738 KLC3Q6P597 504 aa15.11■□□□□ 0.01
COLCA1-204ENST00000540738 TRIM42Q8IWZ5 723 aa15.11■□□□□ 0.01
COLCA1-204ENST00000540738 SYT2Q8N9I0 419 aaPredicted RBP15.11■□□□□ 0.01
COLCA1-204ENST00000540738 TRPM4Q8TD43 1214 aa15.11■□□□□ 0.01
COLCA1-204ENST00000540738 TAF1DQ9H5J8 278 aaPredicted RBP15.11■□□□□ 0.01
COLCA1-204ENST00000540738 B3GAT3O94766 335 aa15.1■□□□□ 0.01
COLCA1-204ENST00000540738 RHOBTB3O94955 611 aa15.1■□□□□ 0.01
COLCA1-204ENST00000540738 PRR29P0C7W0 189 aa15.1■□□□□ 0.01
COLCA1-204ENST00000540738 GNL1P36915 607 aaPredicted RBP15.1■□□□□ 0.01
COLCA1-204ENST00000540738 RPL10AP62906 217 aaKnown RBP15.1■□□□□ 0.01
COLCA1-204ENST00000540738 AMPD2Q01433 879 aa15.1■□□□□ 0.01
COLCA1-204ENST00000540738 GUCY2DQ02846 1103 aa15.1■□□□□ 0.01
COLCA1-204ENST00000540738 ANKRD42Q8N9B4 389 aa15.1■□□□□ 0.01
COLCA1-204ENST00000540738 MRPS31Q92665 395 aaKnown RBP15.1■□□□□ 0.01
COLCA1-204ENST00000540738 NIF3L1Q9GZT8 377 aa15.1■□□□□ 0.01
COLCA1-204ENST00000540738 GPC4O75487 556 aa15.1■□□□□ 0.01
COLCA1-204ENST00000540738 BCAR1P56945 870 aa15.1■□□□□ 0.01
COLCA1-204ENST00000540738 CACNB2Q08289 660 aaPredicted RBP15.1■□□□□ 0.01
COLCA1-204ENST00000540738 GRIK4Q16099 956 aa15.1■□□□□ 0.01
COLCA1-204ENST00000540738 KIZQ2M2Z5 673 aa15.1■□□□□ 0.01
COLCA1-204ENST00000540738 C4orf19Q8IY42 314 aa15.1■□□□□ 0.01
COLCA1-204ENST00000540738 STMN2Q93045 179 aa15.1■□□□□ 0.01
COLCA1-204ENST00000540738 HPDLQ96IR7 371 aa15.1■□□□□ 0.01
COLCA1-204ENST00000540738 TINF2Q9BSI4 451 aa15.1■□□□□ 0.01
COLCA1-204ENST00000540738 SENP2Q9HC62 589 aa15.1■□□□□ 0.01
COLCA1-204ENST00000540738 AGO4Q9HCK5 861 aaKnown RBP15.1■□□□□ 0.01
COLCA1-204ENST00000540738 PDGFRBP09619 1106 aa15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms