RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 CAPN12Q6ZSI9 719 aa12.03□□□□□ -0.48
SYNE1-237ENST00000539504 ZNF365Q70YC5 407 aa12.03□□□□□ -0.48
SYNE1-237ENST00000539504 SLC47A2Q86VL8 602 aa12.03□□□□□ -0.48
SYNE1-237ENST00000539504 SNF8Q96H20 258 aa12.03□□□□□ -0.48
SYNE1-237ENST00000539504 ZNF570Q96NI8 536 aa12.03□□□□□ -0.48
SYNE1-237ENST00000539504 CHST7Q9NS84 486 aa12.03□□□□□ -0.48
SYNE1-237ENST00000539504 SEL1LQ9UBV2 794 aa12.03□□□□□ -0.48
SYNE1-237ENST00000539504 SPAG7O75391 227 aa12.03□□□□□ -0.48
SYNE1-237ENST00000539504 TTC4O95801 387 aa12.03□□□□□ -0.48
SYNE1-237ENST00000539504 STRN3Q13033 797 aa12.03□□□□□ -0.48
SYNE1-237ENST00000539504 MPP2Q14168 576 aa12.03□□□□□ -0.48
SYNE1-237ENST00000539504 GSTA5Q7RTV2 222 aa12.03□□□□□ -0.48
SYNE1-237ENST00000539504 HSD17B14Q9BPX1 270 aa12.03□□□□□ -0.48
SYNE1-237ENST00000539504 ANAPC7Q9UJX3 599 aa12.03□□□□□ -0.48
SYNE1-237ENST00000539504 RASA4BC9J798 803 aa12.03□□□□□ -0.48
SYNE1-237ENST00000539504 RASA4O43374 803 aa12.03□□□□□ -0.48
SYNE1-237ENST00000539504 KRT5P13647 590 aa12.03□□□□□ -0.48
SYNE1-237ENST00000539504 RFX1P22670 979 aa12.03□□□□□ -0.48
SYNE1-237ENST00000539504 MAPK4P31152 587 aa12.03□□□□□ -0.48
SYNE1-237ENST00000539504 IL9RQ01113 521 aa12.03□□□□□ -0.48
SYNE1-237ENST00000539504 ZNF449Q6P9G9 518 aa12.03□□□□□ -0.48
SYNE1-237ENST00000539504 MAB21L3Q8N8X9 362 aa12.03□□□□□ -0.48
SYNE1-237ENST00000539504 TEKT1Q969V4 418 aa12.03□□□□□ -0.48
SYNE1-237ENST00000539504 RAB3IPQ96QF0 476 aaPredicted RBP12.03□□□□□ -0.48
SYNE1-237ENST00000539504 SH2D3AQ9BRG2 576 aa12.03□□□□□ -0.48
SYNE1-237ENST00000539504 CBWD1Q9BRT8 395 aa12.03□□□□□ -0.48
SYNE1-237ENST00000539504 TUFT1Q9NNX1 390 aa12.03□□□□□ -0.48
SYNE1-237ENST00000539504 PCDHA3Q9Y5H8 950 aa12.03□□□□□ -0.48
SYNE1-237ENST00000539504 O00370 1275 aa12.02□□□□□ -0.48
SYNE1-237ENST00000539504 NDUFB10O96000 172 aa12.02□□□□□ -0.48
SYNE1-237ENST00000539504 ALAS1P13196 640 aa12.02□□□□□ -0.48
SYNE1-237ENST00000539504 ITIH2P19823 946 aa12.02□□□□□ -0.48
SYNE1-237ENST00000539504 PCK1P35558 622 aa12.02□□□□□ -0.48
SYNE1-237ENST00000539504 ANKRD20A2Q5SQ80 823 aa12.02□□□□□ -0.48
SYNE1-237ENST00000539504 ANKRD20A1Q5TYW2 823 aa12.02□□□□□ -0.48
SYNE1-237ENST00000539504 ANKRD20A3Q5VUR7 823 aa12.02□□□□□ -0.48
SYNE1-237ENST00000539504 CCDC174Q6PII3 467 aa12.02□□□□□ -0.48
SYNE1-237ENST00000539504 FAM196AQ6ZSG2 479 aa12.02□□□□□ -0.48
SYNE1-237ENST00000539504 OTOP1Q7RTM1 612 aa12.02□□□□□ -0.48
SYNE1-237ENST00000539504 CYP4X1Q8N118 509 aa12.02□□□□□ -0.48
SYNE1-237ENST00000539504 EPS8L1Q8TE68 723 aa12.02□□□□□ -0.48
SYNE1-237ENST00000539504 ERP27Q96DN0 273 aa12.02□□□□□ -0.48
SYNE1-237ENST00000539504 ADAM33Q9BZ11 813 aa12.02□□□□□ -0.48
SYNE1-237ENST00000539504 ADAM22Q9P0K1 906 aa12.02□□□□□ -0.48
SYNE1-237ENST00000539504 SPATA31A5Q5VU36 1347 aa12.02□□□□□ -0.48
SYNE1-237ENST00000539504 SPATA31A7Q8IWB4 1347 aa12.02□□□□□ -0.48
SYNE1-237ENST00000539504 PRELPP51888 382 aa12.02□□□□□ -0.49
SYNE1-237ENST00000539504 RASA3Q14644 834 aa12.02□□□□□ -0.49
SYNE1-237ENST00000539504 CERS5Q8N5B7 392 aa12.02□□□□□ -0.49
SYNE1-237ENST00000539504 MORC4Q8TE76 937 aa12.02□□□□□ -0.49
SYNE1-237ENST00000539504 DMAC2Q9NW81 257 aa12.02□□□□□ -0.49
SYNE1-237ENST00000539504 WHRNQ9P202 907 aa12.02□□□□□ -0.49
SYNE1-237ENST00000539504 NAALADL1Q9UQQ1 740 aa12.02□□□□□ -0.49
SYNE1-237ENST00000539504 POC1B-GALNT4F8VUJ3 575 aa12.02□□□□□ -0.49
SYNE1-237ENST00000539504 H0Y3Z8 333 aa12.02□□□□□ -0.49
SYNE1-237ENST00000539504 OAS1P00973 400 aaKnown RBP12.02□□□□□ -0.49
SYNE1-237ENST00000539504 DNAJC3Q13217 504 aa12.02□□□□□ -0.49
SYNE1-237ENST00000539504 GALNTL6Q49A17 601 aa12.02□□□□□ -0.49
SYNE1-237ENST00000539504 HP1BP3Q5SSJ5 553 aaPredicted RBP12.02□□□□□ -0.49
SYNE1-237ENST00000539504 WDR18Q9BV38 432 aa12.02□□□□□ -0.49
SYNE1-237ENST00000539504 YIPF3Q9GZM5 350 aa12.02□□□□□ -0.49
SYNE1-237ENST00000539504 AAASQ9NRG9 546 aa12.02□□□□□ -0.49
SYNE1-237ENST00000539504 TXLNGQ9NUQ3 528 aa12.02□□□□□ -0.49
SYNE1-237ENST00000539504 BMP3P12645 472 aa12.01□□□□□ -0.49
SYNE1-237ENST00000539504 CCNHP51946 323 aaPredicted RBP12.01□□□□□ -0.49
SYNE1-237ENST00000539504 HADHBP55084 474 aaKnown RBP12.01□□□□□ -0.49
SYNE1-237ENST00000539504 EPC2Q52LR7 807 aa12.01□□□□□ -0.49
SYNE1-237ENST00000539504 RBM26Q5T8P6 1007 aaKnown RBP12.01□□□□□ -0.49
SYNE1-237ENST00000539504 PPP1R21Q6ZMI0 780 aa12.01□□□□□ -0.49
SYNE1-237ENST00000539504 CRYGNQ8WXF5 182 aa12.01□□□□□ -0.49
SYNE1-237ENST00000539504 TMEM237Q96Q45 408 aa12.01□□□□□ -0.49
SYNE1-237ENST00000539504 LXNQ9BS40 222 aa12.01□□□□□ -0.49
SYNE1-237ENST00000539504 ZNF577Q9BSK1 485 aa12.01□□□□□ -0.49
SYNE1-237ENST00000539504 ARHGEF3Q9NR81 526 aa12.01□□□□□ -0.49
SYNE1-237ENST00000539504 NINJ2Q9NZG7 142 aa12.01□□□□□ -0.49
SYNE1-237ENST00000539504 LARSQ9P2J5 1176 aaKnown RBP12.01□□□□□ -0.49
SYNE1-237ENST00000539504 ENO4A6NNW6 628 aa12.01□□□□□ -0.49
SYNE1-237ENST00000539504 RGL2O15211 777 aa12.01□□□□□ -0.49
SYNE1-237ENST00000539504 BBOX1O75936 387 aa12.01□□□□□ -0.49
SYNE1-237ENST00000539504 CALCAP01258 141 aa12.01□□□□□ -0.49
SYNE1-237ENST00000539504 KRT15P19012 456 aa12.01□□□□□ -0.49
SYNE1-237ENST00000539504 TARSP26639 723 aaKnown RBP12.01□□□□□ -0.49
SYNE1-237ENST00000539504 CALRP27797 417 aaKnown RBP12.01□□□□□ -0.49
SYNE1-237ENST00000539504 SLC15A2Q16348 729 aa12.01□□□□□ -0.49
SYNE1-237ENST00000539504 CYP1B1Q16678 543 aa12.01□□□□□ -0.49
SYNE1-237ENST00000539504 ECHDC2Q86YB7 292 aa12.01□□□□□ -0.49
SYNE1-237ENST00000539504 ANKRD35Q8N283 1001 aa12.01□□□□□ -0.49
SYNE1-237ENST00000539504 GRK7Q8WTQ7 553 aa12.01□□□□□ -0.49
SYNE1-237ENST00000539504 MAGEB18Q96M61 343 aa12.01□□□□□ -0.49
SYNE1-237ENST00000539504 LRRC19Q9H756 370 aa12.01□□□□□ -0.49
SYNE1-237ENST00000539504 KIF9Q9HAQ2 790 aa12.01□□□□□ -0.49
SYNE1-237ENST00000539504 NYAP2Q9P242 653 aa12.01□□□□□ -0.49
SYNE1-237ENST00000539504 CDH16O75309 829 aa12.01□□□□□ -0.49
SYNE1-237ENST00000539504 GJB6O95452 261 aa12.01□□□□□ -0.49
SYNE1-237ENST00000539504 CIITAP33076 1130 aa12.01□□□□□ -0.49
SYNE1-237ENST00000539504 MFAP3P55082 362 aa12.01□□□□□ -0.49
SYNE1-237ENST00000539504 MKRN3Q13064 507 aaKnown RBP12.01□□□□□ -0.49
SYNE1-237ENST00000539504 C2CD6Q53TS8 623 aa12.01□□□□□ -0.49
SYNE1-237ENST00000539504 PADI6Q6TGC4 694 aa12.01□□□□□ -0.49
SYNE1-237ENST00000539504 PRUNE1Q86TP1 453 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms