RNA–Protein interactions for RNA: ENST00000538120.5

CLIP1-210, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 3

Gene CLIP1, Length 2,472 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-210ENST00000538120 ZNF454Q8N9F8 522 aa11.61□□□□□ -0.55
CLIP1-210ENST00000538120 ASAP3Q8TDY4 903 aa11.61□□□□□ -0.55
CLIP1-210ENST00000538120 TMEM143Q96AN5 459 aa11.61□□□□□ -0.55
CLIP1-210ENST00000538120 USP20Q9Y2K6 914 aa11.61□□□□□ -0.55
CLIP1-210ENST00000538120 PALMO75781 387 aa11.61□□□□□ -0.55
CLIP1-210ENST00000538120 CXCR5P32302 372 aa11.61□□□□□ -0.55
CLIP1-210ENST00000538120 ARL2P36404 184 aa11.61□□□□□ -0.55
CLIP1-210ENST00000538120 MATR3P43243 847 aaKnown RBP eCLIP11.61□□□□□ -0.55
CLIP1-210ENST00000538120 EAPPQ56P03 285 aaPredicted RBP11.61□□□□□ -0.55
CLIP1-210ENST00000538120 TTC19Q6DKK2 380 aaPredicted RBP11.61□□□□□ -0.55
CLIP1-210ENST00000538120 ALKBH5Q6P6C2 394 aaKnown RBP11.61□□□□□ -0.55
CLIP1-210ENST00000538120 FASTKD5Q7L8L6 764 aaKnown RBP11.61□□□□□ -0.55
CLIP1-210ENST00000538120 ARMC9Q7Z3E5 817 aa11.61□□□□□ -0.55
CLIP1-210ENST00000538120 MFSD14AQ96MC6 490 aa11.61□□□□□ -0.55
CLIP1-210ENST00000538120 ALS2CR12Q96Q35 445 aa11.61□□□□□ -0.55
CLIP1-210ENST00000538120 LRRC1Q9BTT6 524 aa11.61□□□□□ -0.55
CLIP1-210ENST00000538120 LUC7LQ9NQ29 371 aaKnown RBP11.61□□□□□ -0.55
CLIP1-210ENST00000538120 DAAM1Q9Y4D1 1078 aa11.61□□□□□ -0.55
CLIP1-210ENST00000538120 PCDHGC5Q9Y5F6 944 aa11.61□□□□□ -0.55
CLIP1-210ENST00000538120 LRRC37A2A6NM11 1700 aa11.6□□□□□ -0.55
CLIP1-210ENST00000538120 FOXN3O00409 490 aaPredicted RBP11.6□□□□□ -0.55
CLIP1-210ENST00000538120 TGFB3P10600 412 aa11.6□□□□□ -0.55
CLIP1-210ENST00000538120 CKAP4Q07065 602 aaKnown RBP11.6□□□□□ -0.55
CLIP1-210ENST00000538120 NEDD9Q14511 834 aa11.6□□□□□ -0.55
CLIP1-210ENST00000538120 ARHGAP44Q17R89 818 aa11.6□□□□□ -0.55
CLIP1-210ENST00000538120 NFRKBQ6P4R8 1299 aa11.6□□□□□ -0.55
CLIP1-210ENST00000538120 PARD3BQ8TEW8 1205 aa11.6□□□□□ -0.55
CLIP1-210ENST00000538120 SEMA4DQ92854 862 aa11.6□□□□□ -0.55
CLIP1-210ENST00000538120 KCNN1Q92952 543 aa11.6□□□□□ -0.55
CLIP1-210ENST00000538120 OSBPL9Q96SU4 736 aa11.6□□□□□ -0.55
CLIP1-210ENST00000538120 POP1Q99575 1024 aaKnown RBP11.6□□□□□ -0.55
CLIP1-210ENST00000538120 FAM117AQ9C073 453 aa11.6□□□□□ -0.55
CLIP1-210ENST00000538120 PORCNQ9H237 461 aa11.6□□□□□ -0.55
CLIP1-210ENST00000538120 SRCAPQ6ZRS2 3230 aa11.6□□□□□ -0.55
CLIP1-210ENST00000538120 GRID2IPA4D2P6 1211 aa11.6□□□□□ -0.55
CLIP1-210ENST00000538120 GOLGA6BA6NDN3 693 aa11.6□□□□□ -0.55
CLIP1-210ENST00000538120 GGPS1O95749 300 aa11.6□□□□□ -0.55
CLIP1-210ENST00000538120 GLRA2P23416 452 aa11.6□□□□□ -0.55
CLIP1-210ENST00000538120 POLGP54098 1239 aaPredicted RBP11.6□□□□□ -0.55
CLIP1-210ENST00000538120 TTC31Q49AM3 519 aaPredicted RBP11.6□□□□□ -0.55
CLIP1-210ENST00000538120 BRDTQ58F21 947 aaPredicted RBP11.6□□□□□ -0.55
CLIP1-210ENST00000538120 METTL7BQ6UX53 244 aa11.6□□□□□ -0.55
CLIP1-210ENST00000538120 SND1Q7KZF4 910 aaKnown RBP eCLIP11.6□□□□□ -0.55
CLIP1-210ENST00000538120 AENQ8WTP8 325 aaKnown RBP11.6□□□□□ -0.55
CLIP1-210ENST00000538120 IFT74Q96LB3 600 aa11.6□□□□□ -0.55
CLIP1-210ENST00000538120 EFCC1Q9HA90 598 aa11.6□□□□□ -0.55
CLIP1-210ENST00000538120 UBE2TQ9NPD8 197 aaPredicted RBP11.6□□□□□ -0.55
CLIP1-210ENST00000538120 ATP8B3O60423 1300 aa11.59□□□□□ -0.55
CLIP1-210ENST00000538120 GOLGA6CA6NDK9 693 aa11.59□□□□□ -0.55
CLIP1-210ENST00000538120 GOLGA6DP0CG33 693 aa11.59□□□□□ -0.55
CLIP1-210ENST00000538120 GARTP22102 1010 aa11.59□□□□□ -0.55
CLIP1-210ENST00000538120 RFX1P22670 979 aa11.59□□□□□ -0.55
CLIP1-210ENST00000538120 MCM3P25205 808 aa11.59□□□□□ -0.55
CLIP1-210ENST00000538120 CCT5P48643 541 aa11.59□□□□□ -0.55
CLIP1-210ENST00000538120 MXI1P50539 228 aa11.59□□□□□ -0.55
CLIP1-210ENST00000538120 KIF22Q14807 665 aa11.59□□□□□ -0.55
CLIP1-210ENST00000538120 ZNF572Q7Z3I7 529 aaPredicted RBP11.59□□□□□ -0.55
CLIP1-210ENST00000538120 U2AF1L4Q8WU68 220 aaKnown RBP11.59□□□□□ -0.55
CLIP1-210ENST00000538120 SEPT1Q8WYJ6 367 aa11.59□□□□□ -0.55
CLIP1-210ENST00000538120 KAT5Q92993 513 aa11.59□□□□□ -0.55
CLIP1-210ENST00000538120 CCDC127Q96BQ5 260 aa11.59□□□□□ -0.55
CLIP1-210ENST00000538120 RPGRIP1Q96KN7 1286 aa11.59□□□□□ -0.55
CLIP1-210ENST00000538120 MMP19Q99542 508 aa11.59□□□□□ -0.55
CLIP1-210ENST00000538120 TOPORSQ9NS56 1045 aaPredicted RBP11.59□□□□□ -0.55
CLIP1-210ENST00000538120 GOLGA6AQ9NYA3 693 aa11.59□□□□□ -0.55
CLIP1-210ENST00000538120 HYOU1Q9Y4L1 999 aa11.59□□□□□ -0.55
CLIP1-210ENST00000538120 TTC36A6NLP5 189 aa11.59□□□□□ -0.55
CLIP1-210ENST00000538120 SHOX2O60902 331 aaPredicted RBP11.59□□□□□ -0.55
CLIP1-210ENST00000538120 COPB2P35606 906 aa11.59□□□□□ -0.55
CLIP1-210ENST00000538120 TCF7P36402 384 aaPredicted RBP11.59□□□□□ -0.55
CLIP1-210ENST00000538120 IRAK1P51617 712 aa11.59□□□□□ -0.55
CLIP1-210ENST00000538120 STAT5BP51692 787 aa11.59□□□□□ -0.55
CLIP1-210ENST00000538120 NAP1L1P55209 391 aaKnown RBP11.59□□□□□ -0.55
CLIP1-210ENST00000538120 MAP2K1Q02750 393 aaPredicted RBP11.59□□□□□ -0.55
CLIP1-210ENST00000538120 CYP24A1Q07973 514 aa11.59□□□□□ -0.55
CLIP1-210ENST00000538120 DNAJC21Q5F1R6 531 aaKnown RBP11.59□□□□□ -0.55
CLIP1-210ENST00000538120 VARS2Q5ST30 1063 aaKnown RBP11.59□□□□□ -0.55
CLIP1-210ENST00000538120 TMEM63BQ5T3F8 832 aa11.59□□□□□ -0.55
CLIP1-210ENST00000538120 MEI1Q5TIA1 1274 aa11.59□□□□□ -0.55
CLIP1-210ENST00000538120 GLYCTKQ8IVS8 523 aa11.59□□□□□ -0.55
CLIP1-210ENST00000538120 FAM76AQ8TAV0 307 aa11.59□□□□□ -0.55
CLIP1-210ENST00000538120 MORC4Q8TE76 937 aa11.59□□□□□ -0.55
CLIP1-210ENST00000538120 POMGNT1Q8WZA1 660 aa11.59□□□□□ -0.55
CLIP1-210ENST00000538120 HAPLN2Q9GZV7 340 aa11.59□□□□□ -0.55
CLIP1-210ENST00000538120 COQ4Q9Y3A0 265 aa11.59□□□□□ -0.55
CLIP1-210ENST00000538120 STYXL1Q9Y6J8 313 aa11.59□□□□□ -0.55
CLIP1-210ENST00000538120 HNRNPDLO14979 420 aaKnown RBP11.58□□□□□ -0.56
CLIP1-210ENST00000538120 FTCDO95954 541 aa11.58□□□□□ -0.56
CLIP1-210ENST00000538120 EDN1P05305 212 aa11.58□□□□□ -0.56
CLIP1-210ENST00000538120 CYP2C8P10632 490 aa11.58□□□□□ -0.56
CLIP1-210ENST00000538120 TCP1P17987 556 aaKnown RBP11.58□□□□□ -0.56
CLIP1-210ENST00000538120 ERVK-9P63128 1117 aa11.58□□□□□ -0.56
CLIP1-210ENST00000538120 SNAPC2Q13487 334 aa11.58□□□□□ -0.56
CLIP1-210ENST00000538120 GPD1LQ8N335 351 aa11.58□□□□□ -0.56
CLIP1-210ENST00000538120 TSEN2Q8NCE0 465 aaKnown RBP11.58□□□□□ -0.56
CLIP1-210ENST00000538120 KREMEN1Q96MU8 473 aa11.58□□□□□ -0.56
CLIP1-210ENST00000538120 GPR20Q99678 358 aa11.58□□□□□ -0.56
CLIP1-210ENST00000538120 NRBP2Q9NSY0 501 aa11.58□□□□□ -0.56
CLIP1-210ENST00000538120 H0YCG3 227 aa11.58□□□□□ -0.56
CLIP1-210ENST00000538120 PEX14O75381 377 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms