RNA–Protein interactions for RNA: ENST00000536107.5

YBX3-205, Transcript of Y-box binding protein 3, human

TSL 2

Gene YBX3, Length 438 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-205	ENST00000536107	RPUSD2	Q8IZ73	545 aa	Known RBP	4.96	□□□□□ -1.62
YBX3-205	ENST00000536107	TTLL11	Q8NHH1	800 aa		4.96	□□□□□ -1.62
YBX3-205	ENST00000536107	NUP133	Q8WUM0	1156 aa		4.96	□□□□□ -1.62
YBX3-205	ENST00000536107	MBD6	Q96DN6	1003 aa		4.96	□□□□□ -1.62
YBX3-205	ENST00000536107	NAF1	Q96HR8	494 aa	Known RBP	4.96	□□□□□ -1.62
YBX3-205	ENST00000536107	SYT3	Q9BQG1	590 aa		4.96	□□□□□ -1.62
YBX3-205	ENST00000536107	TXNRD2	Q9NNW7	524 aa		4.96	□□□□□ -1.62
YBX3-205	ENST00000536107	TMOD4	Q9NZQ9	345 aa		4.96	□□□□□ -1.62
YBX3-205	ENST00000536107	FRMD4A	Q9P2Q2	1039 aa	Predicted RBP	4.96	□□□□□ -1.62
YBX3-205	ENST00000536107	TBX21	Q9UL17	535 aa		4.96	□□□□□ -1.62
YBX3-205	ENST00000536107	MTUS1	Q9ULD2	1270 aa		4.96	□□□□□ -1.62
YBX3-205	ENST00000536107	CHD7	Q9P2D1	2997 aa		4.96	□□□□□ -1.62
YBX3-205	ENST00000536107	TRANK1	O15050	2925 aa		4.96	□□□□□ -1.62
YBX3-205	ENST00000536107	PRRC2B	Q5JSZ5	2229 aa	Known RBP	4.95	□□□□□ -1.62
YBX3-205	ENST00000536107	PLXNA1	Q9UIW2	1896 aa		4.95	□□□□□ -1.62
YBX3-205	ENST00000536107	TLR3	O15455	904 aa	Known RBP	4.95	□□□□□ -1.62
YBX3-205	ENST00000536107	CTNND1	O60716	968 aa	Known RBP	4.95	□□□□□ -1.62
YBX3-205	ENST00000536107	PGK1	P00558	417 aa		4.95	□□□□□ -1.62
YBX3-205	ENST00000536107	CYBA	P13498	195 aa		4.95	□□□□□ -1.62
YBX3-205	ENST00000536107	NME1	P15531	152 aa	Known RBP	4.95	□□□□□ -1.62
YBX3-205	ENST00000536107	HIBADH	P31937	336 aa	Known RBP	4.95	□□□□□ -1.62
YBX3-205	ENST00000536107	CCL23	P55773	120 aa		4.95	□□□□□ -1.62
YBX3-205	ENST00000536107	ITGA1	P56199	1179 aa		4.95	□□□□□ -1.62
YBX3-205	ENST00000536107	CCNA1	P78396	465 aa		4.95	□□□□□ -1.62
YBX3-205	ENST00000536107	HDLBP	Q00341	1268 aa	Known RBP	4.95	□□□□□ -1.62
YBX3-205	ENST00000536107	TAP1	Q03518	808 aa		4.95	□□□□□ -1.62
YBX3-205	ENST00000536107	PRAMEF19	Q5SWL8	479 aa		4.95	□□□□□ -1.62
YBX3-205	ENST00000536107	CC2D1B	Q5T0F9	858 aa	Known RBP	4.95	□□□□□ -1.62
YBX3-205	ENST00000536107	APOBEC3H	Q6NTF7	200 aa	Known RBP	4.95	□□□□□ -1.62
YBX3-205	ENST00000536107	ARHGEF18	Q6ZSZ5	1173 aa		4.95	□□□□□ -1.62
YBX3-205	ENST00000536107	CCDC191	Q8NCU4	936 aa		4.95	□□□□□ -1.62
YBX3-205	ENST00000536107		Q8TCH9	128 aa		4.95	□□□□□ -1.62
YBX3-205	ENST00000536107	GDPD5	Q8WTR4	605 aa		4.95	□□□□□ -1.62
YBX3-205	ENST00000536107	ZNF503	Q96F45	646 aa		4.95	□□□□□ -1.62
YBX3-205	ENST00000536107	CFAP53	Q96M91	514 aa		4.95	□□□□□ -1.62
YBX3-205	ENST00000536107	ZDHHC15	Q96MV8	337 aa		4.95	□□□□□ -1.62
YBX3-205	ENST00000536107	RWDD3	Q9Y3V2	267 aa		4.95	□□□□□ -1.62
YBX3-205	ENST00000536107	MROH7	Q68CQ1	1323 aa		4.95	□□□□□ -1.62
YBX3-205	ENST00000536107	RIF1	Q5UIP0	2472 aa	Known RBP	4.95	□□□□□ -1.62
YBX3-205	ENST00000536107	FASN	P49327	2511 aa	Known RBP	4.94	□□□□□ -1.62
YBX3-205	ENST00000536107	SLC15A5	A6NIM6	579 aa		4.94	□□□□□ -1.62
YBX3-205	ENST00000536107	ZNF202	O95125	648 aa		4.94	□□□□□ -1.62
YBX3-205	ENST00000536107	CTSH	P09668	335 aa		4.94	□□□□□ -1.62
YBX3-205	ENST00000536107	ZNF28	P17035	718 aa		4.94	□□□□□ -1.62
YBX3-205	ENST00000536107	GYG1	P46976	350 aa		4.94	□□□□□ -1.62
YBX3-205	ENST00000536107	CLUL1	Q15846	466 aa		4.94	□□□□□ -1.62
YBX3-205	ENST00000536107	NFE2L2	Q16236	605 aa		4.94	□□□□□ -1.62
YBX3-205	ENST00000536107	WWC2	Q6AWC2	1192 aa		4.94	□□□□□ -1.62
YBX3-205	ENST00000536107	IGFL4	Q6B9Z1	124 aa		4.94	□□□□□ -1.62
YBX3-205	ENST00000536107	C15orf52	Q6ZUT6	534 aa	Known RBP	4.94	□□□□□ -1.62
YBX3-205	ENST00000536107	NPLOC4	Q8TAT6	608 aa		4.94	□□□□□ -1.62
YBX3-205	ENST00000536107	MTA3	Q9BTC8	594 aa		4.94	□□□□□ -1.62
YBX3-205	ENST00000536107	TRIM8	Q9BZR9	551 aa		4.94	□□□□□ -1.62
YBX3-205	ENST00000536107	JADE2	Q9NQC1	790 aa		4.94	□□□□□ -1.62
YBX3-205	ENST00000536107	RBPJL	Q9UBG7	517 aa		4.94	□□□□□ -1.62
YBX3-205	ENST00000536107	SUCO	Q9UBS9	1254 aa	Known RBP	4.94	□□□□□ -1.62
YBX3-205	ENST00000536107	ZFR2	Q9UPR6	939 aa	Known RBP	4.94	□□□□□ -1.62
YBX3-205	ENST00000536107	ZNF318	Q5VUA4	2279 aa		4.94	□□□□□ -1.62
YBX3-205	ENST00000536107	MYO15A	Q9UKN7	3530 aa		4.94	□□□□□ -1.62
YBX3-205	ENST00000536107	ZNF292	O60281	2723 aa		4.94	□□□□□ -1.62
YBX3-205	ENST00000536107		A0A0G2JMZ2	1700 aa		4.93	□□□□□ -1.62
YBX3-205	ENST00000536107	ANKRD18B	A2A2Z9	1011 aa		4.93	□□□□□ -1.62
YBX3-205	ENST00000536107	STXBP3	O00186	592 aa		4.93	□□□□□ -1.62
YBX3-205	ENST00000536107	LPXN	O60711	386 aa		4.93	□□□□□ -1.62
YBX3-205	ENST00000536107	PPFIA2	O75334	1257 aa		4.93	□□□□□ -1.62
YBX3-205	ENST00000536107	CYP1A1	P04798	512 aa	Predicted RBP	4.93	□□□□□ -1.62
YBX3-205	ENST00000536107	HOXC6	P09630	235 aa		4.93	□□□□□ -1.62
YBX3-205	ENST00000536107	IFNGR1	P15260	489 aa		4.93	□□□□□ -1.62
YBX3-205	ENST00000536107	ZEB1	P37275	1124 aa	Predicted RBP	4.93	□□□□□ -1.62
YBX3-205	ENST00000536107	ACLY	P53396	1101 aa		4.93	□□□□□ -1.62
YBX3-205	ENST00000536107	ATXN1	P54253	815 aa	Known RBP	4.93	□□□□□ -1.62
YBX3-205	ENST00000536107	ZNF445	P59923	1031 aa		4.93	□□□□□ -1.62
YBX3-205	ENST00000536107	ANKRD39	Q53RE8	183 aa		4.93	□□□□□ -1.62
YBX3-205	ENST00000536107	LRCH2	Q5VUJ6	765 aa		4.93	□□□□□ -1.62
YBX3-205	ENST00000536107	RNF207	Q6ZRF8	634 aa		4.93	□□□□□ -1.62
YBX3-205	ENST00000536107	MIB1	Q86YT6	1006 aa		4.93	□□□□□ -1.62
YBX3-205	ENST00000536107	CCDC144CP	Q8IYA2	1237 aa		4.93	□□□□□ -1.62
YBX3-205	ENST00000536107	NEK9	Q8TD19	979 aa		4.93	□□□□□ -1.62
YBX3-205	ENST00000536107	USP33	Q8TEY7	942 aa		4.93	□□□□□ -1.62
YBX3-205	ENST00000536107	TBC1D22A	Q8WUA7	517 aa		4.93	□□□□□ -1.62
YBX3-205	ENST00000536107	DHRS1	Q96LJ7	313 aa		4.93	□□□□□ -1.62
YBX3-205	ENST00000536107	GLT1D1	Q96MS3	346 aa		4.93	□□□□□ -1.62
YBX3-205	ENST00000536107	YTHDC1	Q96MU7	727 aa	Known RBP	4.93	□□□□□ -1.62
YBX3-205	ENST00000536107	CRBN	Q96SW2	442 aa		4.93	□□□□□ -1.62
YBX3-205	ENST00000536107	HIPK3	Q9H422	1215 aa		4.93	□□□□□ -1.62
YBX3-205	ENST00000536107	AS3MT	Q9HBK9	375 aa		4.93	□□□□□ -1.62
YBX3-205	ENST00000536107	DLL4	Q9NR61	685 aa		4.93	□□□□□ -1.62
YBX3-205	ENST00000536107	HYPK	Q9NX55	129 aa		4.93	□□□□□ -1.62
YBX3-205	ENST00000536107	FHOD1	Q9Y613	1164 aa		4.93	□□□□□ -1.62
YBX3-205	ENST00000536107	GPR179	Q6PRD1	2367 aa		4.93	□□□□□ -1.62
YBX3-205	ENST00000536107	MAST3	O60307	1309 aa		4.93	□□□□□ -1.62
YBX3-205	ENST00000536107	FLNB	O75369	2602 aa	Known RBP	4.93	□□□□□ -1.62
YBX3-205	ENST00000536107	MEIS3P2	A8K0S8	358 aa		4.92	□□□□□ -1.62
YBX3-205	ENST00000536107	MINDY4B	A8MYZ0	360 aa		4.92	□□□□□ -1.62
YBX3-205	ENST00000536107		C9IYK1	514 aa		4.92	□□□□□ -1.62
YBX3-205	ENST00000536107	PPP1R11	O60927	126 aa	Predicted RBP	4.92	□□□□□ -1.62
YBX3-205	ENST00000536107	ACTN1	P12814	892 aa		4.92	□□□□□ -1.62
YBX3-205	ENST00000536107	MCM7	P33993	719 aa		4.92	□□□□□ -1.62
YBX3-205	ENST00000536107	INHBC	P55103	352 aa		4.92	□□□□□ -1.62
YBX3-205	ENST00000536107	SIGLEC14	Q08ET2	396 aa		4.92	□□□□□ -1.62

Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms