RNA–Protein interactions for RNA: ENST00000533704.1

CAPN1-225, Transcript of calpain 1, humanhuman

TSL 3

Gene CAPN1, Length 643 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-225ENST00000533704 PLA2G4BP0C869 781 aa11.48□□□□□ -0.57
CAPN1-225ENST00000533704 PDCP20941 246 aa11.48□□□□□ -0.57
CAPN1-225ENST00000533704 UBA7P41226 1012 aa11.48□□□□□ -0.57
CAPN1-225ENST00000533704 OSTNP61366 133 aa11.48□□□□□ -0.57
CAPN1-225ENST00000533704 CACNB1Q02641 598 aaPredicted RBP11.48□□□□□ -0.57
CAPN1-225ENST00000533704 TUSC3Q13454 348 aa11.48□□□□□ -0.57
CAPN1-225ENST00000533704 CUL4AQ13619 759 aa11.48□□□□□ -0.57
CAPN1-225ENST00000533704 HSP90AA2PQ14568 343 aaPredicted RBP11.48□□□□□ -0.57
CAPN1-225ENST00000533704 SF3A1Q15459 793 aaKnown RBP11.48□□□□□ -0.57
CAPN1-225ENST00000533704 ZNF568Q3ZCX4 644 aa11.48□□□□□ -0.57
CAPN1-225ENST00000533704 GLRA4Q5JXX5 417 aa11.48□□□□□ -0.57
CAPN1-225ENST00000533704 ARL6IP4Q66PJ3 421 aaKnown RBP11.48□□□□□ -0.57
CAPN1-225ENST00000533704 FUT10Q6P4F1 479 aa11.48□□□□□ -0.57
CAPN1-225ENST00000533704 TMC5Q6UXY8 1006 aa11.48□□□□□ -0.57
CAPN1-225ENST00000533704 C1orf186Q6ZWK4 172 aa11.48□□□□□ -0.57
CAPN1-225ENST00000533704 GLYCTKQ8IVS8 523 aa11.48□□□□□ -0.57
CAPN1-225ENST00000533704 DAW1Q8N136 415 aa11.48□□□□□ -0.57
CAPN1-225ENST00000533704 SLC22A17Q8WUG5 538 aa11.48□□□□□ -0.57
CAPN1-225ENST00000533704 CALML4Q96GE6 196 aa11.48□□□□□ -0.57
CAPN1-225ENST00000533704 FBXL18Q96ME1 805 aa11.48□□□□□ -0.57
CAPN1-225ENST00000533704 RIPOR3Q96MK2 946 aa11.48□□□□□ -0.57
CAPN1-225ENST00000533704 PAAF1Q9BRP4 392 aa11.48□□□□□ -0.57
CAPN1-225ENST00000533704 TCHPQ9BT92 498 aa11.48□□□□□ -0.57
CAPN1-225ENST00000533704 MRPL4Q9BYD3 311 aaKnown RBP11.48□□□□□ -0.57
CAPN1-225ENST00000533704 NT5C3AQ9H0P0 336 aa11.48□□□□□ -0.57
CAPN1-225ENST00000533704 CXCL16Q9H2A7 254 aa11.48□□□□□ -0.57
CAPN1-225ENST00000533704 ADAM7Q9H2U9 754 aa11.48□□□□□ -0.57
CAPN1-225ENST00000533704 ADAM28Q9UKQ2 775 aa11.48□□□□□ -0.57
CAPN1-225ENST00000533704 PHLPP2Q6ZVD8 1323 aa11.48□□□□□ -0.57
CAPN1-225ENST00000533704 ZMYM2Q9UBW7 1377 aa11.48□□□□□ -0.57
CAPN1-225ENST00000533704 DENND4AQ7Z401 1863 aa11.48□□□□□ -0.57
CAPN1-225ENST00000533704 DOCK6Q96HP0 2047 aa11.48□□□□□ -0.57
CAPN1-225ENST00000533704 PTGESO14684 152 aa11.47□□□□□ -0.57
CAPN1-225ENST00000533704 TEX28O15482 410 aa11.47□□□□□ -0.57
CAPN1-225ENST00000533704 BMP15O95972 392 aa11.47□□□□□ -0.57
CAPN1-225ENST00000533704 THP07101 528 aa11.47□□□□□ -0.57
CAPN1-225ENST00000533704 ADH1AP07327 375 aa11.47□□□□□ -0.57
CAPN1-225ENST00000533704 MTHFRP42898 656 aa11.47□□□□□ -0.57
CAPN1-225ENST00000533704 GRIN1Q05586 938 aa11.47□□□□□ -0.57
CAPN1-225ENST00000533704 ITIH3Q06033 890 aa11.47□□□□□ -0.57
CAPN1-225ENST00000533704 MAPK7Q13164 816 aa11.47□□□□□ -0.57
CAPN1-225ENST00000533704 HYIQ5T013 277 aa11.47□□□□□ -0.57
CAPN1-225ENST00000533704 CEP120Q8N960 986 aa11.47□□□□□ -0.57
CAPN1-225ENST00000533704 RIN2Q8WYP3 895 aaPredicted RBP11.47□□□□□ -0.57
CAPN1-225ENST00000533704 ACO2Q99798 780 aaKnown RBP11.47□□□□□ -0.57
CAPN1-225ENST00000533704 TARS2Q9BW92 718 aaKnown RBP11.47□□□□□ -0.57
CAPN1-225ENST00000533704 GPR62Q9BZJ7 368 aa11.47□□□□□ -0.57
CAPN1-225ENST00000533704 POMKQ9H5K3 350 aa11.47□□□□□ -0.57
CAPN1-225ENST00000533704 MAN1C1Q9NR34 630 aa11.47□□□□□ -0.57
CAPN1-225ENST00000533704 SSX2IPQ9Y2D8 614 aa11.47□□□□□ -0.57
CAPN1-225ENST00000533704 HCN4Q9Y3Q4 1203 aa11.47□□□□□ -0.57
CAPN1-225ENST00000533704 SF3B1O75533 1304 aaKnown RBP eCLIP11.46□□□□□ -0.57
CAPN1-225ENST00000533704 LILRB3O75022 631 aa11.46□□□□□ -0.57
CAPN1-225ENST00000533704 KIF4AO95239 1232 aa11.46□□□□□ -0.57
CAPN1-225ENST00000533704 GLUD1P00367 558 aa11.46□□□□□ -0.57
CAPN1-225ENST00000533704 KRT18P05783 430 aaKnown RBP11.46□□□□□ -0.57
CAPN1-225ENST00000533704 SPATA31D3P0C874 917 aa11.46□□□□□ -0.57
CAPN1-225ENST00000533704 RPL17P18621 184 aaKnown RBP11.46□□□□□ -0.57
CAPN1-225ENST00000533704 GUCY2CP25092 1073 aa11.46□□□□□ -0.57
CAPN1-225ENST00000533704 MATR3P43243 847 aaKnown RBP eCLIP11.46□□□□□ -0.57
CAPN1-225ENST00000533704 CLCN4P51793 760 aa11.46□□□□□ -0.57
CAPN1-225ENST00000533704 SMTNP53814 917 aa11.46□□□□□ -0.57
CAPN1-225ENST00000533704 YARSP54577 528 aaKnown RBP11.46□□□□□ -0.57
CAPN1-225ENST00000533704 SLC12A3P55017 1021 aa11.46□□□□□ -0.57
CAPN1-225ENST00000533704 CEBPZQ03701 1054 aaKnown RBP11.46□□□□□ -0.57
CAPN1-225ENST00000533704 STRN3Q13033 797 aa11.46□□□□□ -0.57
CAPN1-225ENST00000533704 KARSQ15046 597 aaKnown RBP11.46□□□□□ -0.57
CAPN1-225ENST00000533704 USP41Q3LFD5 358 aa11.46□□□□□ -0.57
CAPN1-225ENST00000533704 TMEM119Q4V9L6 283 aa11.46□□□□□ -0.57
CAPN1-225ENST00000533704 HERC4Q5GLZ8 1057 aaPredicted RBP11.46□□□□□ -0.57
CAPN1-225ENST00000533704 ATAT1Q5SQI0 421 aa11.46□□□□□ -0.57
CAPN1-225ENST00000533704 FAM171A1Q5VUB5 890 aa11.46□□□□□ -0.57
CAPN1-225ENST00000533704 KIAA0319Q5VV43 1072 aa11.46□□□□□ -0.57
CAPN1-225ENST00000533704 FAM173BQ6P4H8 233 aa11.46□□□□□ -0.57
CAPN1-225ENST00000533704 SPATA31D4Q6ZUB0 917 aa11.46□□□□□ -0.57
CAPN1-225ENST00000533704 TAS1R3Q7RTX0 852 aa11.46□□□□□ -0.57
CAPN1-225ENST00000533704 GPBP1Q86WP2 473 aa11.46□□□□□ -0.57
CAPN1-225ENST00000533704 CEP57Q86XR8 500 aa11.46□□□□□ -0.57
CAPN1-225ENST00000533704 PALB2Q86YC2 1186 aa11.46□□□□□ -0.57
CAPN1-225ENST00000533704 SYT2Q8N9I0 419 aaPredicted RBP11.46□□□□□ -0.57
CAPN1-225ENST00000533704 FEZF2Q8TBJ5 459 aa11.46□□□□□ -0.57
CAPN1-225ENST00000533704 AK8Q96MA6 479 aa11.46□□□□□ -0.57
CAPN1-225ENST00000533704 NECTIN4Q96NY8 510 aa11.46□□□□□ -0.57
CAPN1-225ENST00000533704 TIPINQ9BVW5 301 aa11.46□□□□□ -0.57
CAPN1-225ENST00000533704 CCDC94Q9BW85 323 aaPredicted RBP11.46□□□□□ -0.57
CAPN1-225ENST00000533704 CDT1Q9H211 546 aa11.46□□□□□ -0.57
CAPN1-225ENST00000533704 ZHX3Q9H4I2 956 aa11.46□□□□□ -0.57
CAPN1-225ENST00000533704 TMEM134Q9H6X4 195 aa11.46□□□□□ -0.57
CAPN1-225ENST00000533704 SFXN1Q9H9B4 322 aa11.46□□□□□ -0.57
CAPN1-225ENST00000533704 ARHGAP28Q9P2N2 729 aa11.46□□□□□ -0.57
CAPN1-225ENST00000533704 ANKFY1Q9P2R3 1169 aa11.46□□□□□ -0.57
CAPN1-225ENST00000533704 TNFSF13BQ9Y275 285 aa11.46□□□□□ -0.57
CAPN1-225ENST00000533704 NR2E1Q9Y466 385 aa11.46□□□□□ -0.57
CAPN1-225ENST00000533704 RBM19Q9Y4C8 960 aaKnown RBP11.46□□□□□ -0.57
CAPN1-225ENST00000533704 PRR33A8MZF0 331 aa11.45□□□□□ -0.58
CAPN1-225ENST00000533704 FAM13AO94988 1023 aa11.45□□□□□ -0.58
CAPN1-225ENST00000533704 PLS3P13797 630 aa11.45□□□□□ -0.58
CAPN1-225ENST00000533704 PLCG1P19174 1290 aa11.45□□□□□ -0.58
CAPN1-225ENST00000533704 SYT1P21579 422 aa11.45□□□□□ -0.58
CAPN1-225ENST00000533704 MARCKSP29966 332 aaPredicted RBP11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms