RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 CA14Q9ULX7 337 aa26.13■■□□□ 1.77
CPSF1-202ENST00000527827 BTBD18B2RXH4 712 aa26.12■■□□□ 1.77
CPSF1-202ENST00000527827 RTP2Q5QGT7 225 aa26.12■■□□□ 1.77
CPSF1-202ENST00000527827 PRSS55Q6UWB4 352 aaPredicted RBP26.12■■□□□ 1.77
CPSF1-202ENST00000527827 PPP4R3CPQ6ZMV5 832 aa26.12■■□□□ 1.77
CPSF1-202ENST00000527827 ADSSL1Q8N142 457 aa26.12■■□□□ 1.77
CPSF1-202ENST00000527827 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP26.12■■□□□ 1.771e-8■■□□□ 12.4
CPSF1-202ENST00000527827 POTEMA6NI47 508 aa26.11■■□□□ 1.77
CPSF1-202ENST00000527827 LRRIQ4A6NIV6 560 aa26.11■■□□□ 1.77
CPSF1-202ENST00000527827 ANHXE9PGG2 379 aa26.11■■□□□ 1.77
CPSF1-202ENST00000527827 STK25O00506 426 aa26.11■■□□□ 1.77
CPSF1-202ENST00000527827 NEMFO60524 1076 aa26.11■■□□□ 1.77
CPSF1-202ENST00000527827 TADA2AO75478 443 aa26.11■■□□□ 1.77
CPSF1-202ENST00000527827 ZMYND10O75800 440 aa26.11■■□□□ 1.77
CPSF1-202ENST00000527827 LARGE1O95461 756 aa26.11■■□□□ 1.77
CPSF1-202ENST00000527827 SPATA31C1P0DKV0 1188 aa26.11■■□□□ 1.77
CPSF1-202ENST00000527827 XRCC6P12956 609 aaKnown RBP eCLIP26.11■■□□□ 1.77
CPSF1-202ENST00000527827 CREMQ03060 361 aa26.11■■□□□ 1.77
CPSF1-202ENST00000527827 HSP90AA2PQ14568 343 aaPredicted RBP26.11■■□□□ 1.77
CPSF1-202ENST00000527827 ME3Q16798 604 aa26.11■■□□□ 1.77
CPSF1-202ENST00000527827 GET4Q7L5D6 327 aaPredicted RBP26.11■■□□□ 1.77
CPSF1-202ENST00000527827 MAEAQ7L5Y9 396 aa26.11■■□□□ 1.77
CPSF1-202ENST00000527827 GPR152Q8TDT2 470 aa26.11■■□□□ 1.77
CPSF1-202ENST00000527827 TBC1D17Q9HA65 648 aa26.11■■□□□ 1.77
CPSF1-202ENST00000527827 TTLL13PA6NNM8 815 aa26.1■■□□□ 1.77
CPSF1-202ENST00000527827 TUSC3Q13454 348 aa26.1■■□□□ 1.77
CPSF1-202ENST00000527827 HTR4Q13639 388 aa26.1■■□□□ 1.77
CPSF1-202ENST00000527827 ANKRD1Q15327 319 aa26.1■■□□□ 1.77
CPSF1-202ENST00000527827 CDCA2Q69YH5 1023 aaPredicted RBP26.1■■□□□ 1.77
CPSF1-202ENST00000527827 GTF3C6Q969F1 213 aa26.1■■□□□ 1.77
CPSF1-202ENST00000527827 PRIMPOLQ96LW4 560 aa26.1■■□□□ 1.77
CPSF1-202ENST00000527827 FZD8Q9H461 694 aa26.1■■□□□ 1.77
CPSF1-202ENST00000527827 PRMT7Q9NVM4 692 aaPredicted RBP26.1■■□□□ 1.77
CPSF1-202ENST00000527827 SF3B1O75533 1304 aaKnown RBP eCLIP26.1■■□□□ 1.777e-8■■■■■ 37.5
CPSF1-202ENST00000527827 FAM187BQ17R55 369 aa26.09■■□□□ 1.77
CPSF1-202ENST00000527827 DIS3L2Q8IYB7 885 aaKnown RBP26.09■■□□□ 1.77
CPSF1-202ENST00000527827 NSUN7Q8NE18 718 aaKnown RBP26.09■■□□□ 1.77
CPSF1-202ENST00000527827 ST13P5Q8NFI4 369 aaPredicted RBP26.09■■□□□ 1.77
CPSF1-202ENST00000527827 HASPINQ8TF76 798 aa26.09■■□□□ 1.77
CPSF1-202ENST00000527827 CXCL16Q9H2A7 254 aa26.09■■□□□ 1.77
CPSF1-202ENST00000527827 TMEM60Q9H2L4 133 aa26.09■■□□□ 1.77
CPSF1-202ENST00000527827 FBXW11Q9UKB1 542 aa26.09■■□□□ 1.77
CPSF1-202ENST00000527827 VWA8A3KMH1 1905 aa26.09■■□□□ 1.77
CPSF1-202ENST00000527827 MYH15Q9Y2K3 1946 aa26.08■■□□□ 1.77
CPSF1-202ENST00000527827 CASTOR2A6NHX0 329 aa26.08■■□□□ 1.77
CPSF1-202ENST00000527827 PTGESO14684 152 aa26.08■■□□□ 1.77
CPSF1-202ENST00000527827 ANAPC15P60006 121 aa26.08■■□□□ 1.77
CPSF1-202ENST00000527827 FOXK2Q01167 660 aa26.08■■□□□ 1.77
CPSF1-202ENST00000527827 CLSTN3Q9BQT9 956 aa26.08■■□□□ 1.77
CPSF1-202ENST00000527827 PDZD7Q9H5P4 517 aa26.08■■□□□ 1.77
CPSF1-202ENST00000527827 NUMBLQ9Y6R0 609 aa26.08■■□□□ 1.77
CPSF1-202ENST00000527827 WDR87Q6ZQQ6 2873 aa26.08■■□□□ 1.76
CPSF1-202ENST00000527827 EP300Q09472 2414 aaPredicted RBP26.07■■□□□ 1.76
CPSF1-202ENST00000527827 ZNF292O60281 2723 aa26.07■■□□□ 1.76
CPSF1-202ENST00000527827 MED24O75448 989 aa26.07■■□□□ 1.76
CPSF1-202ENST00000527827 KIF4AO95239 1232 aa26.07■■□□□ 1.76
CPSF1-202ENST00000527827 RFX1P22670 979 aa26.07■■□□□ 1.76
CPSF1-202ENST00000527827 FOSBP53539 338 aa26.07■■□□□ 1.76
CPSF1-202ENST00000527827 NAB2Q15742 525 aa26.07■■□□□ 1.76
CPSF1-202ENST00000527827 PHLDB3Q6NSJ2 640 aa26.07■■□□□ 1.76
CPSF1-202ENST00000527827 CATSPER3Q86XQ3 398 aa26.07■■□□□ 1.76
CPSF1-202ENST00000527827 MCPH1Q8NEM0 835 aa26.07■■□□□ 1.76
CPSF1-202ENST00000527827 LNX1Q8TBB1 728 aaPredicted RBP26.07■■□□□ 1.76
CPSF1-202ENST00000527827 PIK3R5Q8WYR1 880 aa26.07■■□□□ 1.76
CPSF1-202ENST00000527827 TTPALQ9BTX7 342 aa26.07■■□□□ 1.76
CPSF1-202ENST00000527827 TUFT1Q9NNX1 390 aa26.07■■□□□ 1.76
CPSF1-202ENST00000527827 ARHGEF3Q9NR81 526 aa26.07■■□□□ 1.76
CPSF1-202ENST00000527827 SLC2A4RGQ9NR83 387 aa26.07■■□□□ 1.76
CPSF1-202ENST00000527827 SNTG2Q9NY99 539 aa26.07■■□□□ 1.76
CPSF1-202ENST00000527827 DLGAP2Q9P1A6 1054 aa26.07■■□□□ 1.76
CPSF1-202ENST00000527827 DCHS1Q96JQ0 3298 aa26.06■■□□□ 1.76
CPSF1-202ENST00000527827 JAK2O60674 1132 aa26.06■■□□□ 1.76
CPSF1-202ENST00000527827 ATP2B1P20020 1258 aa26.06■■□□□ 1.76
CPSF1-202ENST00000527827 FSHRP23945 695 aa26.06■■□□□ 1.76
CPSF1-202ENST00000527827 FAM171A1Q5VUB5 890 aa26.06■■□□□ 1.76
CPSF1-202ENST00000527827 GRASPQ7Z6J2 395 aaPredicted RBP26.06■■□□□ 1.76
CPSF1-202ENST00000527827 BSNDQ8WZ55 320 aa26.06■■□□□ 1.76
CPSF1-202ENST00000527827 RPP25Q9BUL9 199 aaKnown RBP26.06■■□□□ 1.76
CPSF1-202ENST00000527827 USP20Q9Y2K6 914 aa26.06■■□□□ 1.76
CPSF1-202ENST00000527827 N4BP3O15049 544 aa26.05■■□□□ 1.76
CPSF1-202ENST00000527827 RECQL4O94761 1208 aa26.05■■□□□ 1.76
CPSF1-202ENST00000527827 DCNP07585 359 aaKnown RBP26.05■■□□□ 1.76
CPSF1-202ENST00000527827 NTHL1P78549 312 aa26.05■■□□□ 1.76
CPSF1-202ENST00000527827 PSMD5Q16401 504 aa26.05■■□□□ 1.76
CPSF1-202ENST00000527827 CEP57Q86XR8 500 aa26.05■■□□□ 1.76
CPSF1-202ENST00000527827 ZBTB8OSQ8IWT0 167 aa26.05■■□□□ 1.76
CPSF1-202ENST00000527827 ZFP37Q9Y6Q3 630 aaPredicted RBP26.05■■□□□ 1.76
CPSF1-202ENST00000527827 FANCMQ8IYD8 2048 aa26.05■■□□□ 1.76
CPSF1-202ENST00000527827 TRIP11Q15643 1979 aa26.04■■□□□ 1.76
CPSF1-202ENST00000527827 NOTCH4Q99466 2003 aa26.04■■□□□ 1.76
CPSF1-202ENST00000527827 ADAM12O43184 909 aa26.04■■□□□ 1.76
CPSF1-202ENST00000527827 EDN1P05305 212 aa26.04■■□□□ 1.76
CPSF1-202ENST00000527827 THP07101 528 aa26.04■■□□□ 1.76
CPSF1-202ENST00000527827 HNRNPA1P09651 372 aaKnown RBP eCLIP26.04■■□□□ 1.76
CPSF1-202ENST00000527827 SPECC1Q5M775 1068 aa26.04■■□□□ 1.76
CPSF1-202ENST00000527827 NOSTRINQ8IVI9 506 aa26.04■■□□□ 1.76
CPSF1-202ENST00000527827 FGF14Q92915 247 aa26.04■■□□□ 1.76
CPSF1-202ENST00000527827 NACC1Q96RE7 527 aa26.04■■□□□ 1.76
CPSF1-202ENST00000527827 POLR3CQ9BUI4 534 aaPredicted RBP26.04■■□□□ 1.76
CPSF1-202ENST00000527827 CCDC113Q9H0I3 377 aa26.04■■□□□ 1.76
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms