RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 HDAC5Q9UQL6 1122 aa5.51□□□□□ -1.53
CD44-217ENST00000525348 TBKBP1A7MCY6 615 aa5.5□□□□□ -1.53
CD44-217ENST00000525348 PRR5-ARHGAP8B1AHC4 643 aa5.5□□□□□ -1.53
CD44-217ENST00000525348 B5MCH6 92 aa5.5□□□□□ -1.53
CD44-217ENST00000525348 PCDHGA12O60330 932 aa5.5□□□□□ -1.53
CD44-217ENST00000525348 KATNA1O75449 491 aa5.5□□□□□ -1.53
CD44-217ENST00000525348 PEX11BO96011 259 aa5.5□□□□□ -1.53
CD44-217ENST00000525348 MT-CO1P00395 513 aa5.5□□□□□ -1.53
CD44-217ENST00000525348 GSPT1P15170 499 aaKnown RBP5.5□□□□□ -1.53
CD44-217ENST00000525348 PTPN7P35236 360 aa5.5□□□□□ -1.53
CD44-217ENST00000525348 SLC5A3P53794 718 aa5.5□□□□□ -1.53
CD44-217ENST00000525348 FAM50AQ14320 339 aaKnown RBP5.5□□□□□ -1.53
CD44-217ENST00000525348 NOMO1Q15155 1222 aa5.5□□□□□ -1.53
CD44-217ENST00000525348 BMT2Q1RMZ1 405 aa5.5□□□□□ -1.53
CD44-217ENST00000525348 ABCB5Q2M3G0 1257 aa5.5□□□□□ -1.53
CD44-217ENST00000525348 FAM47AQ5JRC9 791 aa5.5□□□□□ -1.53
CD44-217ENST00000525348 METRNLQ641Q3 311 aa5.5□□□□□ -1.53
CD44-217ENST00000525348 RHOUQ7L0Q8 258 aa5.5□□□□□ -1.53
CD44-217ENST00000525348 ZNF276Q8N554 614 aa5.5□□□□□ -1.53
CD44-217ENST00000525348 OR10H5Q8NGA6 315 aa5.5□□□□□ -1.53
CD44-217ENST00000525348 NEU1Q99519 415 aa5.5□□□□□ -1.53
CD44-217ENST00000525348 NRDE2Q9H7Z3 1164 aa5.5□□□□□ -1.53
CD44-217ENST00000525348 TUBD1Q9UJT1 453 aa5.5□□□□□ -1.53
CD44-217ENST00000525348 REXO2Q9Y3B8 237 aaKnown RBP5.5□□□□□ -1.53
CD44-217ENST00000525348 CHST2Q9Y4C5 530 aa5.5□□□□□ -1.53
CD44-217ENST00000525348 PCDHGA9Q9Y5G4 932 aaKnown RBP5.5□□□□□ -1.53
CD44-217ENST00000525348 PCDHGA8Q9Y5G5 932 aa5.5□□□□□ -1.53
CD44-217ENST00000525348 PCDHGA7Q9Y5G6 932 aa5.5□□□□□ -1.53
CD44-217ENST00000525348 PCDHGA6Q9Y5G7 932 aa5.5□□□□□ -1.53
CD44-217ENST00000525348 PCDHGA3Q9Y5H0 932 aa5.5□□□□□ -1.53
CD44-217ENST00000525348 PNPLA7Q6ZV29 1317 aa5.49□□□□□ -1.53
CD44-217ENST00000525348 GABRDO14764 452 aa5.49□□□□□ -1.53
CD44-217ENST00000525348 TRIM24O15164 1050 aa5.49□□□□□ -1.53
CD44-217ENST00000525348 SCAF4O95104 1147 aaKnown RBP5.49□□□□□ -1.53
CD44-217ENST00000525348 ZSCAN20P17040 1043 aaPredicted RBP5.49□□□□□ -1.53
CD44-217ENST00000525348 FPR1P21462 350 aa5.49□□□□□ -1.53
CD44-217ENST00000525348 GUCY1A2P33402 732 aa5.49□□□□□ -1.53
CD44-217ENST00000525348 GUCY2FP51841 1108 aa5.49□□□□□ -1.53
CD44-217ENST00000525348 MGAT2Q10469 447 aa5.49□□□□□ -1.53
CD44-217ENST00000525348 DRICH1Q6PGQ1 229 aaPredicted RBP5.49□□□□□ -1.53
CD44-217ENST00000525348 USP51Q70EK9 711 aa5.49□□□□□ -1.53
CD44-217ENST00000525348 PDZD4Q76G19 769 aaPredicted RBP5.49□□□□□ -1.53
CD44-217ENST00000525348 MRGPREQ86SM8 312 aa5.49□□□□□ -1.53
CD44-217ENST00000525348 PQLC1Q8N2U9 271 aa5.49□□□□□ -1.53
CD44-217ENST00000525348 SLC25A43Q8WUT9 341 aaPredicted RBP5.49□□□□□ -1.53
CD44-217ENST00000525348 STON2Q8WXE9 905 aa5.49□□□□□ -1.53
CD44-217ENST00000525348 JADE3Q92613 823 aa5.49□□□□□ -1.53
CD44-217ENST00000525348 TFAP2CQ92754 450 aa5.49□□□□□ -1.53
CD44-217ENST00000525348 DPF2Q92785 391 aa5.49□□□□□ -1.53
CD44-217ENST00000525348 ADI1Q9BV57 179 aa5.49□□□□□ -1.53
CD44-217ENST00000525348 EIF2B4Q9UI10 523 aaKnown RBP5.49□□□□□ -1.53
CD44-217ENST00000525348 ZNF185O15231 689 aa5.48□□□□□ -1.53
CD44-217ENST00000525348 KRT4P19013 534 aa5.48□□□□□ -1.53
CD44-217ENST00000525348 PCSK1P29120 753 aa5.48□□□□□ -1.53
CD44-217ENST00000525348 MCM7P33993 719 aa5.48□□□□□ -1.53
CD44-217ENST00000525348 RNASE9P60153 205 aaKnown RBP5.48□□□□□ -1.53
CD44-217ENST00000525348 NHLH2Q02577 135 aa5.48□□□□□ -1.53
CD44-217ENST00000525348 FHL2Q14192 279 aa5.48□□□□□ -1.53
CD44-217ENST00000525348 SYDE2Q5VT97 1194 aa5.48□□□□□ -1.53
CD44-217ENST00000525348 AFMIDQ63HM1 303 aa5.48□□□□□ -1.53
CD44-217ENST00000525348 PGM2L1Q6PCE3 622 aa5.48□□□□□ -1.53
CD44-217ENST00000525348 PPM1NQ8N819 430 aa5.48□□□□□ -1.53
CD44-217ENST00000525348 NRG4Q8WWG1 115 aa5.48□□□□□ -1.53
CD44-217ENST00000525348 NEU4Q8WWR8 484 aaPredicted RBP5.48□□□□□ -1.53
CD44-217ENST00000525348 MTMR8Q96EF0 704 aa5.48□□□□□ -1.53
CD44-217ENST00000525348 UHRF1Q96T88 793 aaPredicted RBP5.48□□□□□ -1.53
CD44-217ENST00000525348 MLST8Q9BVC4 326 aa5.48□□□□□ -1.53
CD44-217ENST00000525348 MRIQ9BWK5 157 aa5.48□□□□□ -1.53
CD44-217ENST00000525348 TRPM5Q9NZQ8 1165 aa5.48□□□□□ -1.53
CD44-217ENST00000525348 DNM3Q9UQ16 869 aa5.48□□□□□ -1.53
CD44-217ENST00000525348 AMY1AP04745 511 aa5.47□□□□□ -1.53
CD44-217ENST00000525348 RBP3P10745 1247 aa5.47□□□□□ -1.53
CD44-217ENST00000525348 C5AR1P21730 350 aa5.47□□□□□ -1.53
CD44-217ENST00000525348 ALDH1A3P47895 512 aa5.47□□□□□ -1.53
CD44-217ENST00000525348 SP140Q13342 867 aa5.47□□□□□ -1.53
CD44-217ENST00000525348 PCBP2Q15366 365 aaKnown RBP eCLIP5.47□□□□□ -1.53
CD44-217ENST00000525348 CLUL1Q15846 466 aa5.47□□□□□ -1.53
CD44-217ENST00000525348 EFCAB12Q6NXP0 572 aa5.47□□□□□ -1.53
CD44-217ENST00000525348 AMOTL1Q8IY63 956 aa5.47□□□□□ -1.53
CD44-217ENST00000525348 ZGPATQ8N5A5 531 aaKnown RBP5.47□□□□□ -1.53
CD44-217ENST00000525348 DDX55Q8NHQ9 600 aaKnown RBP eCLIP5.47□□□□□ -1.53
CD44-217ENST00000525348 LENG9Q96B70 501 aa5.47□□□□□ -1.53
CD44-217ENST00000525348 FAXDC2Q96IV6 333 aa5.47□□□□□ -1.53
CD44-217ENST00000525348 MYOCQ99972 504 aa5.47□□□□□ -1.53
CD44-217ENST00000525348 PCDH12Q9NPG4 1184 aa5.47□□□□□ -1.53
CD44-217ENST00000525348 LANCL2Q9NS86 450 aa5.47□□□□□ -1.53
CD44-217ENST00000525348 SLC23A1Q9UHI7 598 aa5.47□□□□□ -1.53
CD44-217ENST00000525348 AJAP1Q9UKB5 411 aaPredicted RBP5.47□□□□□ -1.53
CD44-217ENST00000525348 COL4A3BPQ9Y5P4 624 aa5.47□□□□□ -1.53
CD44-217ENST00000525348 ACTL7AQ9Y615 435 aa5.47□□□□□ -1.53
CD44-217ENST00000525348 PJA2O43164 708 aa5.46□□□□□ -1.54
CD44-217ENST00000525348 NDUFS2O75306 463 aa5.46□□□□□ -1.54
CD44-217ENST00000525348 ADH4P08319 380 aa5.46□□□□□ -1.54
CD44-217ENST00000525348 MYBL2P10244 700 aa5.46□□□□□ -1.54
CD44-217ENST00000525348 MAKP20794 623 aa5.46□□□□□ -1.54
CD44-217ENST00000525348 CHN2P52757 468 aa5.46□□□□□ -1.54
CD44-217ENST00000525348 CLRN1P58418 232 aa5.46□□□□□ -1.54
CD44-217ENST00000525348 ITKQ08881 620 aa5.46□□□□□ -1.54
CD44-217ENST00000525348 PDCD4Q53EL6 469 aaKnown RBP5.46□□□□□ -1.54
CD44-217ENST00000525348 FAM102AQ5T9C2 384 aaPredicted RBP5.46□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms