RNA–Protein interactions for RNA: ENST00000525293.5

CD44-216, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 569 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-216ENST00000525293 DCLRE1CQ96SD1 692 aaKnown RBP3.26□□□□□ -1.89
CD44-216ENST00000525293 PRRX2Q99811 253 aa3.26□□□□□ -1.89
CD44-216ENST00000525293 POLR3GLQ9BT43 218 aa3.26□□□□□ -1.89
CD44-216ENST00000525293 IFT122Q9HBG6 1241 aa3.26□□□□□ -1.89
CD44-216ENST00000525293 C14orf119Q9NWQ9 140 aa3.26□□□□□ -1.89
CD44-216ENST00000525293 DMRT1Q9Y5R6 373 aa3.26□□□□□ -1.89
CD44-216ENST00000525293 OVOL3O00110 214 aa3.25□□□□□ -1.89
CD44-216ENST00000525293 ZNF185O15231 689 aa3.25□□□□□ -1.89
CD44-216ENST00000525293 GPR39O43194 453 aa3.25□□□□□ -1.89
CD44-216ENST00000525293 LPXNO60711 386 aa3.25□□□□□ -1.89
CD44-216ENST00000525293 NCR1O76036 304 aa3.25□□□□□ -1.89
CD44-216ENST00000525293 PRKD3O94806 890 aa3.25□□□□□ -1.89
CD44-216ENST00000525293 RBP3P10745 1247 aa3.25□□□□□ -1.89
CD44-216ENST00000525293 MTHFD2P13995 350 aa3.25□□□□□ -1.89
CD44-216ENST00000525293 MGAT1P26572 445 aa3.25□□□□□ -1.89
CD44-216ENST00000525293 GPR3P46089 330 aa3.25□□□□□ -1.89
CD44-216ENST00000525293 PER3P56645 1201 aa3.25□□□□□ -1.89
CD44-216ENST00000525293 SRSF2Q01130 221 aaKnown RBP3.25□□□□□ -1.89
CD44-216ENST00000525293 ADRM1Q16186 407 aa3.25□□□□□ -1.89
CD44-216ENST00000525293 MST1LQ2TV78 715 aa3.25□□□□□ -1.89
CD44-216ENST00000525293 MUM1L1Q5H9M0 696 aa3.25□□□□□ -1.89
CD44-216ENST00000525293 FAM47AQ5JRC9 791 aa3.25□□□□□ -1.89
CD44-216ENST00000525293 MBNL2Q5VZF2 373 aaKnown RBP3.25□□□□□ -1.89
CD44-216ENST00000525293 DRICH1Q6PGQ1 229 aaPredicted RBP3.25□□□□□ -1.89
CD44-216ENST00000525293 FAM180AQ6UWF9 173 aa3.25□□□□□ -1.89
CD44-216ENST00000525293 LRRC55Q6ZSA7 311 aa3.25□□□□□ -1.89
CD44-216ENST00000525293 Q6ZVL8 140 aa3.25□□□□□ -1.89
CD44-216ENST00000525293 KCNK18Q7Z418 384 aa3.25□□□□□ -1.89
CD44-216ENST00000525293 TRMT2AQ8IZ69 625 aaKnown RBP3.25□□□□□ -1.89
CD44-216ENST00000525293 OR7D4Q8NG98 312 aa3.25□□□□□ -1.89
CD44-216ENST00000525293 COG1Q8WTW3 980 aa3.25□□□□□ -1.89
CD44-216ENST00000525293 PHACTR3Q96KR7 559 aa3.25□□□□□ -1.89
CD44-216ENST00000525293 ORAI2Q96SN7 254 aa3.25□□□□□ -1.89
CD44-216ENST00000525293 UHRF1Q96T88 793 aaPredicted RBP3.25□□□□□ -1.89
CD44-216ENST00000525293 AGAP2Q99490 1192 aa3.25□□□□□ -1.89
CD44-216ENST00000525293 SLC46A2Q9BY10 475 aa3.25□□□□□ -1.89
CD44-216ENST00000525293 TEX101Q9BY14 249 aa3.25□□□□□ -1.89
CD44-216ENST00000525293 ACE2Q9BYF1 805 aaPredicted RBP3.25□□□□□ -1.89
CD44-216ENST00000525293 FAM126AQ9BYI3 521 aaPredicted RBP3.25□□□□□ -1.89
CD44-216ENST00000525293 GREM2Q9H772 168 aa3.25□□□□□ -1.89
CD44-216ENST00000525293 AKIP1Q9NQ31 210 aa3.25□□□□□ -1.89
CD44-216ENST00000525293 DMRT3Q9NQL9 472 aa3.25□□□□□ -1.89
CD44-216ENST00000525293 DNAJC28Q9NX36 388 aa3.25□□□□□ -1.89
CD44-216ENST00000525293 CHST2Q9Y4C5 530 aa3.25□□□□□ -1.89
CD44-216ENST00000525293 HS3ST4Q9Y661 456 aa3.25□□□□□ -1.89
CD44-216ENST00000525293 CENPVL1A0A0U1RR11 272 aa3.24□□□□□ -1.89
CD44-216ENST00000525293 CXorf49A8MYA2 514 aaPredicted RBP3.24□□□□□ -1.89
CD44-216ENST00000525293 RNASET2O00584 256 aaKnown RBP3.24□□□□□ -1.89
CD44-216ENST00000525293 WNT10BO00744 389 aa3.24□□□□□ -1.89
CD44-216ENST00000525293 PPFIA4O75335 1185 aa3.24□□□□□ -1.89
CD44-216ENST00000525293 NDUFA10O95299 355 aa3.24□□□□□ -1.89
CD44-216ENST00000525293 GCP02774 474 aa3.24□□□□□ -1.89
CD44-216ENST00000525293 VIL1P09327 827 aaKnown RBP3.24□□□□□ -1.89
CD44-216ENST00000525293 OSMP13725 252 aa3.24□□□□□ -1.89
CD44-216ENST00000525293 GSPT1P15170 499 aaKnown RBP3.24□□□□□ -1.89
CD44-216ENST00000525293 ZSCAN20P17040 1043 aaPredicted RBP3.24□□□□□ -1.89
CD44-216ENST00000525293 ECHS1P30084 290 aa3.24□□□□□ -1.89
CD44-216ENST00000525293 FLT3LGP49771 235 aa3.24□□□□□ -1.89
CD44-216ENST00000525293 INHBEP58166 350 aa3.24□□□□□ -1.89
CD44-216ENST00000525293 CLRN1P58418 232 aa3.24□□□□□ -1.89
CD44-216ENST00000525293 PURAQ00577 322 aaKnown RBP3.24□□□□□ -1.89
CD44-216ENST00000525293 NOMO1Q15155 1222 aa3.24□□□□□ -1.89
CD44-216ENST00000525293 SMN1Q16637 294 aaKnown RBP3.24□□□□□ -1.89
CD44-216ENST00000525293 PDCD4Q53EL6 469 aaKnown RBP3.24□□□□□ -1.89
CD44-216ENST00000525293 ATXN7L2Q5T6C5 722 aaPredicted RBP3.24□□□□□ -1.89
CD44-216ENST00000525293 PCSK4Q6UW60 755 aa3.24□□□□□ -1.89
CD44-216ENST00000525293 SPATS2Q86XZ4 545 aaKnown RBP3.24□□□□□ -1.89
CD44-216ENST00000525293 PQLC1Q8N2U9 271 aa3.24□□□□□ -1.89
CD44-216ENST00000525293 ATL2Q8NHH9 583 aa3.24□□□□□ -1.89
CD44-216ENST00000525293 ZFP28Q8NHY6 868 aa3.24□□□□□ -1.89
CD44-216ENST00000525293 STON2Q8WXE9 905 aa3.24□□□□□ -1.89
CD44-216ENST00000525293 MYEOVQ96EZ4 313 aa3.24□□□□□ -1.89
CD44-216ENST00000525293 LDAHQ9H6V9 325 aa3.24□□□□□ -1.89
CD44-216ENST00000525293 BCO1Q9HAY6 547 aa3.24□□□□□ -1.89
CD44-216ENST00000525293 RBM12Q9NTZ6 932 aaKnown RBP3.24□□□□□ -1.89
CD44-216ENST00000525293 ANKFY1Q9P2R3 1169 aa3.24□□□□□ -1.89
CD44-216ENST00000525293 SCOCQ9UIL1 159 aa3.24□□□□□ -1.89
CD44-216ENST00000525293 ZBTB21Q9ULJ3 1066 aa3.24□□□□□ -1.89
CD44-216ENST00000525293 USP15Q9Y4E8 981 aaPredicted RBP3.24□□□□□ -1.89
CD44-216ENST00000525293 PCDHGA2Q9Y5H1 932 aa3.24□□□□□ -1.89
CD44-216ENST00000525293 COL4A3Q01955 1670 aa3.24□□□□□ -1.89
CD44-216ENST00000525293 GAGE12BA1L429 117 aa3.23□□□□□ -1.89
CD44-216ENST00000525293 GAGE12HA6NDE8 117 aa3.23□□□□□ -1.89
CD44-216ENST00000525293 DRGXA6NNA5 263 aa3.23□□□□□ -1.89
CD44-216ENST00000525293 DIRC3C9JPN6 131 aa3.23□□□□□ -1.89
CD44-216ENST00000525293 PJA2O43164 708 aa3.23□□□□□ -1.89
CD44-216ENST00000525293 HMGB1P09429 215 aaKnown RBP3.23□□□□□ -1.89
CD44-216ENST00000525293 SNRPA1P09661 255 aaKnown RBP3.23□□□□□ -1.89
CD44-216ENST00000525293 ALOX15P16050 662 aaPredicted RBP3.23□□□□□ -1.89
CD44-216ENST00000525293 POU3F3P20264 500 aaPredicted RBP3.23□□□□□ -1.89
CD44-216ENST00000525293 SREBF1P36956 1147 aa3.23□□□□□ -1.89
CD44-216ENST00000525293 CHN2P52757 468 aa3.23□□□□□ -1.89
CD44-216ENST00000525293 RAP2BP61225 183 aa3.23□□□□□ -1.89
CD44-216ENST00000525293 PPP3CAQ08209 521 aa3.23□□□□□ -1.89
CD44-216ENST00000525293 MALLQ13021 153 aa3.23□□□□□ -1.89
CD44-216ENST00000525293 ANO4Q32M45 955 aa3.23□□□□□ -1.89
CD44-216ENST00000525293 KRTAP15-1Q3LI76 137 aa3.23□□□□□ -1.89
CD44-216ENST00000525293 FAM102AQ5T9C2 384 aaPredicted RBP3.23□□□□□ -1.89
CD44-216ENST00000525293 RNF219Q5W0B1 726 aaPredicted RBP3.23□□□□□ -1.89
CD44-216ENST00000525293 AFMIDQ63HM1 303 aa3.23□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms