RNA–Protein interactions for RNA: ENST00000522515.5

LSM1-204, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 1,568 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-204ENST00000522515 MEIS3P2A8K0S8 358 aa17.72■□□□□ 0.43
LSM1-204ENST00000522515 IKBKBO14920 756 aa17.72■□□□□ 0.43
LSM1-204ENST00000522515 FGBP02675 491 aa17.72■□□□□ 0.43
LSM1-204ENST00000522515 SNRNP35Q16560 246 aaKnown RBP17.72■□□□□ 0.43
LSM1-204ENST00000522515 TMEM240Q5SV17 173 aa17.72■□□□□ 0.43
LSM1-204ENST00000522515 LIN28BQ6ZN17 250 aaKnown RBP eCLIP17.72■□□□□ 0.435e-7■□□□□ 9.5
LSM1-204ENST00000522515 OTOP2Q7RTS6 562 aa17.72■□□□□ 0.43
LSM1-204ENST00000522515 MRPL10Q7Z7H8 261 aaKnown RBP17.72■□□□□ 0.43
LSM1-204ENST00000522515 GAS2L3Q86XJ1 694 aa17.72■□□□□ 0.43
LSM1-204ENST00000522515 ECHDC2Q86YB7 292 aa17.72■□□□□ 0.43
LSM1-204ENST00000522515 FAM200AQ8TCP9 573 aa17.72■□□□□ 0.43
LSM1-204ENST00000522515 LPPQ93052 612 aa17.72■□□□□ 0.43
LSM1-204ENST00000522515 CEP63Q96MT8 703 aa17.72■□□□□ 0.43
LSM1-204ENST00000522515 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.72■□□□□ 0.43
LSM1-204ENST00000522515 APOL6Q9BWW8 343 aa17.72■□□□□ 0.43
LSM1-204ENST00000522515 MEFVO15553 781 aaPredicted RBP17.71■□□□□ 0.43
LSM1-204ENST00000522515 ADRB2P07550 413 aa17.71■□□□□ 0.43
LSM1-204ENST00000522515 ACTN1P12814 892 aa17.71■□□□□ 0.43
LSM1-204ENST00000522515 AKAP5P24588 427 aa17.71■□□□□ 0.43
LSM1-204ENST00000522515 MAGEA10P43363 369 aaPredicted RBP17.71■□□□□ 0.43
LSM1-204ENST00000522515 HSP90AA4PQ58FG1 418 aa17.71■□□□□ 0.43
LSM1-204ENST00000522515 PSRC1Q6PGN9 363 aaPredicted RBP17.71■□□□□ 0.43
LSM1-204ENST00000522515 FILIP1Q7Z7B0 1213 aa17.71■□□□□ 0.43
LSM1-204ENST00000522515 ZNF598Q86UK7 904 aaKnown RBP17.71■□□□□ 0.43
LSM1-204ENST00000522515 LUZP1Q86V48 1076 aa17.71■□□□□ 0.43
LSM1-204ENST00000522515 IRF2BP1Q8IU81 584 aa17.71■□□□□ 0.43
LSM1-204ENST00000522515 RNF169Q8NCN4 708 aa17.71■□□□□ 0.43
LSM1-204ENST00000522515 CCDC94Q9BW85 323 aaPredicted RBP17.71■□□□□ 0.43
LSM1-204ENST00000522515 KIAA1586Q9HCI6 787 aa17.71■□□□□ 0.43
LSM1-204ENST00000522515 SAMSN1Q9NSI8 373 aaKnown RBP17.71■□□□□ 0.43
LSM1-204ENST00000522515 FANCLQ9NW38 375 aa17.71■□□□□ 0.43
LSM1-204ENST00000522515 FRMD4BQ9Y2L6 1034 aa17.71■□□□□ 0.43
LSM1-204ENST00000522515 ZNF233A6NK53 670 aa17.7■□□□□ 0.42
LSM1-204ENST00000522515 BAIAP3O94812 1187 aa17.7■□□□□ 0.42
LSM1-204ENST00000522515 CLTAP09496 248 aa17.7■□□□□ 0.42
LSM1-204ENST00000522515 SKIP12755 728 aa17.7■□□□□ 0.42
LSM1-204ENST00000522515 ITGA4P13612 1032 aa17.7■□□□□ 0.42
LSM1-204ENST00000522515 PSMC2P35998 433 aaKnown RBP17.7■□□□□ 0.42
LSM1-204ENST00000522515 ENOX2Q16206 610 aaKnown RBP17.7■□□□□ 0.42
LSM1-204ENST00000522515 KYAT1Q16773 422 aa17.7■□□□□ 0.42
LSM1-204ENST00000522515 AGMOQ6ZNB7 445 aa17.7■□□□□ 0.42
LSM1-204ENST00000522515 RNF214Q8ND24 703 aa17.7■□□□□ 0.42
LSM1-204ENST00000522515 ACAP3Q96P50 834 aa17.7■□□□□ 0.42
LSM1-204ENST00000522515 HSD3B7Q9H2F3 369 aa17.7■□□□□ 0.42
LSM1-204ENST00000522515 SMTNL1A8MU46 457 aa17.7■□□□□ 0.42
LSM1-204ENST00000522515 BECN2A8MW95 431 aa17.7■□□□□ 0.42
LSM1-204ENST00000522515 EFCAB14O75071 495 aa17.7■□□□□ 0.42
LSM1-204ENST00000522515 RECQL4O94761 1208 aa17.7■□□□□ 0.42
LSM1-204ENST00000522515 FGFR1OPO95684 399 aaKnown RBP17.7■□□□□ 0.42
LSM1-204ENST00000522515 EOMESO95936 686 aa17.7■□□□□ 0.42
LSM1-204ENST00000522515 CXCL8P10145 99 aa17.7■□□□□ 0.42
LSM1-204ENST00000522515 WNT7BP56706 349 aa17.7■□□□□ 0.42
LSM1-204ENST00000522515 WDR5P61964 334 aaKnown RBP17.7■□□□□ 0.42
LSM1-204ENST00000522515 SLC10A6Q3KNW5 377 aa17.7■□□□□ 0.42
LSM1-204ENST00000522515 FAM186BQ8IYM0 893 aa17.7■□□□□ 0.42
LSM1-204ENST00000522515 CRIPAKQ8N1N5 446 aa17.7■□□□□ 0.42
LSM1-204ENST00000522515 MKNK1Q9BUB5 465 aa17.7■□□□□ 0.42
LSM1-204ENST00000522515 CXCL16Q9H2A7 254 aa17.7■□□□□ 0.42
LSM1-204ENST00000522515 THAP9Q9H5L6 903 aa17.7■□□□□ 0.42
LSM1-204ENST00000522515 RPF1Q9H9Y2 349 aaKnown RBP17.7■□□□□ 0.42
LSM1-204ENST00000522515 TMEM161AQ9NX61 479 aa17.7■□□□□ 0.42
LSM1-204ENST00000522515 RBAKQ9NYW8 714 aaPredicted RBP17.7■□□□□ 0.42
LSM1-204ENST00000522515 PARP2Q9UGN5 583 aa17.7■□□□□ 0.42
LSM1-204ENST00000522515 TNRC18O15417 2968 aaPredicted RBP17.69■□□□□ 0.42
LSM1-204ENST00000522515 H0YGN5 161 aa17.69■□□□□ 0.42
LSM1-204ENST00000522515 SLC16A3O15427 465 aaKnown RBP17.69■□□□□ 0.42
LSM1-204ENST00000522515 EPB41P11171 864 aaKnown RBP17.69■□□□□ 0.42
LSM1-204ENST00000522515 DEFB103AP81534 67 aa17.69■□□□□ 0.42
LSM1-204ENST00000522515 BRSK2Q8IWQ3 736 aa17.69■□□□□ 0.42
LSM1-204ENST00000522515 HACE1Q8IYU2 909 aa17.69■□□□□ 0.42
LSM1-204ENST00000522515 PGBD4Q96DM1 585 aa17.69■□□□□ 0.42
LSM1-204ENST00000522515 BORCS6Q96GS4 357 aa17.69■□□□□ 0.42
LSM1-204ENST00000522515 MFSD14AQ96MC6 490 aa17.69■□□□□ 0.42
LSM1-204ENST00000522515 ELAC1Q9H777 363 aaKnown RBP17.69■□□□□ 0.42
LSM1-204ENST00000522515 KLK14Q9P0G3 267 aa17.69■□□□□ 0.42
LSM1-204ENST00000522515 CXXC1Q9P0U4 656 aaPredicted RBP17.69■□□□□ 0.42
LSM1-204ENST00000522515 TTC3P53804 2025 aa17.68■□□□□ 0.42
LSM1-204ENST00000522515 ZBBXA8MT70 800 aa17.68■□□□□ 0.42
LSM1-204ENST00000522515 MAPK13O15264 365 aa17.68■□□□□ 0.42
LSM1-204ENST00000522515 YARSP54577 528 aaKnown RBP17.68■□□□□ 0.42
LSM1-204ENST00000522515 CYP24A1Q07973 514 aa17.68■□□□□ 0.42
LSM1-204ENST00000522515 CCDC40Q4G0X9 1142 aa17.68■□□□□ 0.42
LSM1-204ENST00000522515 CDKAL1Q5VV42 579 aa17.68■□□□□ 0.42
LSM1-204ENST00000522515 PLEKHO2Q8TD55 490 aa17.68■□□□□ 0.42
LSM1-204ENST00000522515 FAM212AQ96EL1 285 aa17.68■□□□□ 0.42
LSM1-204ENST00000522515 CNOT6LQ96LI5 555 aaKnown RBP17.68■□□□□ 0.42
LSM1-204ENST00000522515 RBSNQ9H1K0 784 aa17.68■□□□□ 0.42
LSM1-204ENST00000522515 PDE11AQ9HCR9 933 aa17.68■□□□□ 0.42
LSM1-204ENST00000522515 RNF19AQ9NV58 838 aa17.68■□□□□ 0.42
LSM1-204ENST00000522515 PCDHB7Q9Y5E2 793 aa17.68■□□□□ 0.42
LSM1-204ENST00000522515 TTC26A0AVF1 554 aa17.67■□□□□ 0.42
LSM1-204ENST00000522515 LACTBL1A8MY62 500 aa17.67■□□□□ 0.42
LSM1-204ENST00000522515 TULP1O00294 542 aaPredicted RBP17.67■□□□□ 0.42
LSM1-204ENST00000522515 UPP2O95045 317 aa17.67■□□□□ 0.42
LSM1-204ENST00000522515 GNA14O95837 355 aa17.67■□□□□ 0.42
LSM1-204ENST00000522515 FGFR1P11362 822 aa17.67■□□□□ 0.42
LSM1-204ENST00000522515 AFF1P51825 1210 aaKnown RBP17.67■□□□□ 0.42
LSM1-204ENST00000522515 POU5F1Q01860 360 aaKnown RBP17.67■□□□□ 0.42
LSM1-204ENST00000522515 HSP90AA2PQ14568 343 aaPredicted RBP17.67■□□□□ 0.42
LSM1-204ENST00000522515 ALKAL1Q6UXT8 129 aa17.67■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms