RNA–Protein interactions for RNA: ENST00000515035.5

TCOF1-214, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,240 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-214ENST00000515035 HNRNPLLQ8WVV9 542 aaKnown RBP14.05□□□□□ -0.16
TCOF1-214ENST00000515035 NR1H4Q96RI1 486 aaPredicted RBP14.05□□□□□ -0.16
TCOF1-214ENST00000515035 AP5M1Q9H0R1 490 aa14.05□□□□□ -0.16
TCOF1-214ENST00000515035 VHLP40337 213 aa14.04□□□□□ -0.16
TCOF1-214ENST00000515035 RASGRF1Q13972 1273 aa14.04□□□□□ -0.16
TCOF1-214ENST00000515035 PLD3Q8IV08 490 aa14.04□□□□□ -0.16
TCOF1-214ENST00000515035 C9orf72Q96LT7 481 aa14.04□□□□□ -0.16
TCOF1-214ENST00000515035 RUBCNLQ9H714 662 aa14.04□□□□□ -0.16
TCOF1-214ENST00000515035 PDP2Q9P2J9 529 aa14.04□□□□□ -0.16
TCOF1-214ENST00000515035 MARCOQ9UEW3 520 aaPredicted RBP14.04□□□□□ -0.16
TCOF1-214ENST00000515035 TMEM120BA0PK00 339 aa14.04□□□□□ -0.16
TCOF1-214ENST00000515035 FOXP2O15409 715 aa14.04□□□□□ -0.16
TCOF1-214ENST00000515035 AKAP10O43572 662 aa14.04□□□□□ -0.16
TCOF1-214ENST00000515035 ENO3P13929 434 aaPredicted RBP14.04□□□□□ -0.16
TCOF1-214ENST00000515035 S100A5P33763 92 aa14.04□□□□□ -0.16
TCOF1-214ENST00000515035 FAM160B2Q86V87 743 aa14.04□□□□□ -0.16
TCOF1-214ENST00000515035 TEX12Q9BXU0 123 aa14.04□□□□□ -0.16
TCOF1-214ENST00000515035 GEMIN8Q9NWZ8 242 aaKnown RBP14.04□□□□□ -0.16
TCOF1-214ENST00000515035 TRIM10Q9UDY6 481 aa14.04□□□□□ -0.16
TCOF1-214ENST00000515035 PP2D1A8MPX8 630 aa14.04□□□□□ -0.16
TCOF1-214ENST00000515035 SEMA3FQ13275 785 aa14.04□□□□□ -0.16
TCOF1-214ENST00000515035 PDXDC2PQ6P474 469 aa14.04□□□□□ -0.16
TCOF1-214ENST00000515035 CYB5R4Q7L1T6 521 aa14.04□□□□□ -0.16
TCOF1-214ENST00000515035 GALNT4Q8N4A0 578 aa14.04□□□□□ -0.16
TCOF1-214ENST00000515035 ARHGEF1Q92888 912 aaKnown RBP14.04□□□□□ -0.16
TCOF1-214ENST00000515035 RBM15Q96T37 977 aaKnown RBP eCLIP14.04□□□□□ -0.16
TCOF1-214ENST00000515035 F5H423 210 aaPredicted RBP14.04□□□□□ -0.16
TCOF1-214ENST00000515035 PSAPP07602 524 aa14.04□□□□□ -0.16
TCOF1-214ENST00000515035 CCDC15Q0P6D6 951 aa14.04□□□□□ -0.16
TCOF1-214ENST00000515035 SLC18A3Q16572 532 aa14.04□□□□□ -0.16
TCOF1-214ENST00000515035 TC2NQ8N9U0 490 aa14.04□□□□□ -0.16
TCOF1-214ENST00000515035 OR6B3Q8NGW1 331 aa14.04□□□□□ -0.16
TCOF1-214ENST00000515035 SLC10A4Q96EP9 437 aa14.04□□□□□ -0.16
TCOF1-214ENST00000515035 HACD3Q9P035 362 aa14.04□□□□□ -0.16
TCOF1-214ENST00000515035 PYGLP06737 847 aa14.03□□□□□ -0.16
TCOF1-214ENST00000515035 ACADSP16219 412 aa14.03□□□□□ -0.16
TCOF1-214ENST00000515035 VCAM1P19320 739 aa14.03□□□□□ -0.16
TCOF1-214ENST00000515035 PLA2G4AP47712 749 aa14.03□□□□□ -0.16
TCOF1-214ENST00000515035 UBE3AQ05086 875 aa14.03□□□□□ -0.16
TCOF1-214ENST00000515035 DDIASQ8IXT1 998 aa14.03□□□□□ -0.16
TCOF1-214ENST00000515035 THNSL1Q8IYQ7 743 aa14.03□□□□□ -0.16
TCOF1-214ENST00000515035 TAGAPQ8N103 731 aa14.03□□□□□ -0.16
TCOF1-214ENST00000515035 INPP5DQ92835 1189 aa14.03□□□□□ -0.16
TCOF1-214ENST00000515035 BLOC1S6Q9UL45 172 aa14.03□□□□□ -0.16
TCOF1-214ENST00000515035 NEDD4P46934 1319 aa14.03□□□□□ -0.16
TCOF1-214ENST00000515035 WDR19Q8NEZ3 1342 aa14.03□□□□□ -0.16
TCOF1-214ENST00000515035 XPO1O14980 1071 aaKnown RBP14.03□□□□□ -0.16
TCOF1-214ENST00000515035 SERPINB1P30740 379 aa14.03□□□□□ -0.16
TCOF1-214ENST00000515035 SDC4P31431 198 aa14.03□□□□□ -0.16
TCOF1-214ENST00000515035 POTEAQ6S8J7 498 aa14.03□□□□□ -0.16
TCOF1-214ENST00000515035 SZRD1Q7Z422 152 aa14.03□□□□□ -0.16
TCOF1-214ENST00000515035 ZNF710Q8N1W2 664 aa14.03□□□□□ -0.16
TCOF1-214ENST00000515035 TMA16Q96EY4 203 aaKnown RBP14.03□□□□□ -0.16
TCOF1-214ENST00000515035 MTRQ99707 1265 aa14.03□□□□□ -0.16
TCOF1-214ENST00000515035 SH3GL2Q99962 352 aa14.03□□□□□ -0.16
TCOF1-214ENST00000515035 UBN2Q6ZU65 1347 aa14.03□□□□□ -0.16
TCOF1-214ENST00000515035 POTEB3A0JP26 581 aa14.03□□□□□ -0.16
TCOF1-214ENST00000515035 POTECB2RU33 542 aa14.03□□□□□ -0.16
TCOF1-214ENST00000515035 KIF28PB7ZC32 967 aa14.03□□□□□ -0.16
TCOF1-214ENST00000515035 SRGAP2CP0DJJ0 459 aa14.03□□□□□ -0.16
TCOF1-214ENST00000515035 RFX1P22670 979 aa14.03□□□□□ -0.16
TCOF1-214ENST00000515035 CDC27P30260 824 aa14.03□□□□□ -0.16
TCOF1-214ENST00000515035 VAMP7P51809 220 aa14.03□□□□□ -0.16
TCOF1-214ENST00000515035 STX3Q13277 289 aa14.03□□□□□ -0.16
TCOF1-214ENST00000515035 AP3B2Q13367 1082 aa14.03□□□□□ -0.16
TCOF1-214ENST00000515035 POTEBQ6S5H4 581 aa14.03□□□□□ -0.16
TCOF1-214ENST00000515035 MB21D2Q8IYB1 491 aaPredicted RBP14.03□□□□□ -0.16
TCOF1-214ENST00000515035 OLFML3Q9NRN5 406 aa14.03□□□□□ -0.16
TCOF1-214ENST00000515035 GIMAP4Q9NUV9 329 aa14.03□□□□□ -0.16
TCOF1-214ENST00000515035 DDX56Q9NY93 547 aaKnown RBP14.03□□□□□ -0.16
TCOF1-214ENST00000515035 SMARCAL1Q9NZC9 954 aa14.03□□□□□ -0.16
TCOF1-214ENST00000515035 SFMBT1Q9UHJ3 866 aa14.03□□□□□ -0.16
TCOF1-214ENST00000515035 PNMA3Q9UL41 463 aa14.03□□□□□ -0.16
TCOF1-214ENST00000515035 ABT1Q9ULW3 272 aaKnown RBP14.03□□□□□ -0.16
TCOF1-214ENST00000515035 TRPM1Q7Z4N2 1603 aa14.03□□□□□ -0.16
TCOF1-214ENST00000515035 ZSCAN9O15535 394 aaPredicted RBP14.03□□□□□ -0.16
TCOF1-214ENST00000515035 MYBL1P10243 752 aa14.03□□□□□ -0.16
TCOF1-214ENST00000515035 FCER1AP12319 257 aa14.03□□□□□ -0.16
TCOF1-214ENST00000515035 COPB2P35606 906 aa14.03□□□□□ -0.16
TCOF1-214ENST00000515035 FMR1Q06787 632 aaKnown RBP eCLIP14.03□□□□□ -0.165e-7■■■■□ 20.4
TCOF1-214ENST00000515035 NYAP1Q6ZVC0 841 aa14.03□□□□□ -0.16
TCOF1-214ENST00000515035 C10orf88Q9H8K7 445 aa14.03□□□□□ -0.16
TCOF1-214ENST00000515035 KIAA1586Q9HCI6 787 aa14.03□□□□□ -0.16
TCOF1-214ENST00000515035 ZFATQ9P243 1243 aa14.03□□□□□ -0.16
TCOF1-214ENST00000515035 SPHKAPQ2M3C7 1700 aa14.02□□□□□ -0.16
TCOF1-214ENST00000515035 M0R3G1 203 aa14.02□□□□□ -0.16
TCOF1-214ENST00000515035 PJA2O43164 708 aa14.02□□□□□ -0.16
TCOF1-214ENST00000515035 RAD51CO43502 376 aa14.02□□□□□ -0.16
TCOF1-214ENST00000515035 PHF2O75151 1096 aa14.02□□□□□ -0.16
TCOF1-214ENST00000515035 ATP6V1B1P15313 513 aa14.02□□□□□ -0.16
TCOF1-214ENST00000515035 ANKRD40Q6AI12 368 aa14.02□□□□□ -0.16
TCOF1-214ENST00000515035 LRRC31Q6UY01 552 aa14.02□□□□□ -0.16
TCOF1-214ENST00000515035 EP400NLQ6ZTU2 488 aa14.02□□□□□ -0.16
TCOF1-214ENST00000515035 SYDE1Q6ZW31 735 aaPredicted RBP14.02□□□□□ -0.16
TCOF1-214ENST00000515035 RNF135Q8IUD6 432 aa14.02□□□□□ -0.16
TCOF1-214ENST00000515035 PRPF18Q99633 342 aaKnown RBP14.02□□□□□ -0.16
TCOF1-214ENST00000515035 ITIH6Q6UXX5 1313 aa14.02□□□□□ -0.16
TCOF1-214ENST00000515035 SSU72P8A0A1W2PR75 194 aa14.02□□□□□ -0.16
TCOF1-214ENST00000515035 PSMD14O00487 310 aa14.02□□□□□ -0.16
TCOF1-214ENST00000515035 ANGPT2O15123 496 aa14.02□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms