RNA–Protein interactions for RNA: ENST00000513578.5

RNF4-220, Transcript of ring finger protein 4, humanhuman

TSL 4

Gene RNF4, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-220ENST00000513578 CLDN3O15551 220 aa9.05□□□□□ -0.96
RNF4-220ENST00000513578 TADA3O75528 432 aa9.05□□□□□ -0.96
RNF4-220ENST00000513578 EDN1P05305 212 aa9.05□□□□□ -0.96
RNF4-220ENST00000513578 PRKCBP05771 671 aa9.05□□□□□ -0.96
RNF4-220ENST00000513578 ZNF865P0CJ78 1059 aaPredicted RBP9.05□□□□□ -0.96
RNF4-220ENST00000513578 MARK3P27448 753 aa9.05□□□□□ -0.96
RNF4-220ENST00000513578 TMOD1P28289 359 aa9.05□□□□□ -0.96
RNF4-220ENST00000513578 RGS2P41220 211 aa9.05□□□□□ -0.96
RNF4-220ENST00000513578 NLRP11P59045 1033 aaKnown RBP9.05□□□□□ -0.96
RNF4-220ENST00000513578 TNFAIP2Q03169 654 aa9.05□□□□□ -0.96
RNF4-220ENST00000513578 NCBP1Q09161 790 aaKnown RBP9.05□□□□□ -0.96
RNF4-220ENST00000513578 PRPF4BQ13523 1007 aaKnown RBP9.05□□□□□ -0.96
RNF4-220ENST00000513578 IFI16Q16666 785 aaKnown RBP9.05□□□□□ -0.96
RNF4-220ENST00000513578 DGKDQ16760 1214 aa9.05□□□□□ -0.96
RNF4-220ENST00000513578 ALKBH5Q6P6C2 394 aaKnown RBP9.05□□□□□ -0.96
RNF4-220ENST00000513578 CHRDL2Q6WN34 429 aa9.05□□□□□ -0.96
RNF4-220ENST00000513578 RSRC2Q7L4I2 434 aaKnown RBP9.05□□□□□ -0.96
RNF4-220ENST00000513578 SRGAP1Q7Z6B7 1085 aa9.05□□□□□ -0.96
RNF4-220ENST00000513578 MTERF4Q7Z6M4 381 aaKnown RBP9.05□□□□□ -0.96
RNF4-220ENST00000513578 ARHGEF19Q8IW93 802 aa9.05□□□□□ -0.96
RNF4-220ENST00000513578 BRSK2Q8IWQ3 736 aa9.05□□□□□ -0.96
RNF4-220ENST00000513578 FAM71AQ8IYT1 594 aa9.05□□□□□ -0.96
RNF4-220ENST00000513578 RNF149Q8NC42 400 aa9.05□□□□□ -0.96
RNF4-220ENST00000513578 OR6J1Q8NGC5 347 aa9.05□□□□□ -0.96
RNF4-220ENST00000513578 HELQQ8TDG4 1101 aa9.05□□□□□ -0.96
RNF4-220ENST00000513578 SEMA4DQ92854 862 aa9.05□□□□□ -0.96
RNF4-220ENST00000513578 NT5C1BQ96P26 610 aa9.05□□□□□ -0.96
RNF4-220ENST00000513578 NOX5Q96PH1 765 aa9.05□□□□□ -0.96
RNF4-220ENST00000513578 ALS2CR12Q96Q35 445 aa9.05□□□□□ -0.96
RNF4-220ENST00000513578 CGRRF1Q99675 332 aa9.05□□□□□ -0.96
RNF4-220ENST00000513578 MSTO1Q9BUK6 570 aa9.05□□□□□ -0.96
RNF4-220ENST00000513578 TUT1Q9H6E5 874 aaKnown RBP9.05□□□□□ -0.96
RNF4-220ENST00000513578 SUGCTQ9HAC7 445 aa9.05□□□□□ -0.96
RNF4-220ENST00000513578 UBE2TQ9NPD8 197 aaPredicted RBP9.05□□□□□ -0.96
RNF4-220ENST00000513578 PRMT7Q9NVM4 692 aaPredicted RBP9.05□□□□□ -0.96
RNF4-220ENST00000513578 TSKSQ9UJT2 592 aa9.05□□□□□ -0.96
RNF4-220ENST00000513578 GJD2Q9UKL4 321 aa9.05□□□□□ -0.96
RNF4-220ENST00000513578 TNFSF13BQ9Y275 285 aa9.05□□□□□ -0.96
RNF4-220ENST00000513578 PCDHGC5Q9Y5F6 944 aa9.05□□□□□ -0.96
RNF4-220ENST00000513578 CITO14578 2027 aa9.05□□□□□ -0.96
RNF4-220ENST00000513578 C11orf97A0A1B0GVM6 126 aaPredicted RBP9.04□□□□□ -0.96
RNF4-220ENST00000513578 FOXN3O00409 490 aaPredicted RBP9.04□□□□□ -0.96
RNF4-220ENST00000513578 DDX3XO00571 662 aaKnown RBP eCLIP9.04□□□□□ -0.962e-8■■■□□ 17.9
RNF4-220ENST00000513578 H2AFZP0C0S5 128 aa9.04□□□□□ -0.96
RNF4-220ENST00000513578 GZMAP12544 262 aa9.04□□□□□ -0.96
RNF4-220ENST00000513578 KLRC1P26715 233 aa9.04□□□□□ -0.96
RNF4-220ENST00000513578 PHKA2P46019 1235 aa9.04□□□□□ -0.96
RNF4-220ENST00000513578 HADHBP55084 474 aaKnown RBP9.04□□□□□ -0.96
RNF4-220ENST00000513578 MAP2K1Q02750 393 aaPredicted RBP9.04□□□□□ -0.96
RNF4-220ENST00000513578 MBTD1Q05BQ5 628 aa9.04□□□□□ -0.96
RNF4-220ENST00000513578 PCBP1Q15365 356 aaKnown RBP eCLIP9.04□□□□□ -0.96
RNF4-220ENST00000513578 KYAT1Q16773 422 aa9.04□□□□□ -0.96
RNF4-220ENST00000513578 KIAA0753Q2KHM9 967 aa9.04□□□□□ -0.96
RNF4-220ENST00000513578 MTHFD1LQ6UB35 978 aa9.04□□□□□ -0.96
RNF4-220ENST00000513578 MPZL3Q6UWV2 235 aa9.04□□□□□ -0.96
RNF4-220ENST00000513578 H2AFVQ71UI9 128 aa9.04□□□□□ -0.96
RNF4-220ENST00000513578 ZNF410Q86VK4 478 aa9.04□□□□□ -0.96
RNF4-220ENST00000513578 WDR49Q8IV35 697 aa9.04□□□□□ -0.96
RNF4-220ENST00000513578 REM2Q8IYK8 340 aaPredicted RBP9.04□□□□□ -0.96
RNF4-220ENST00000513578 ZNF710Q8N1W2 664 aa9.04□□□□□ -0.96
RNF4-220ENST00000513578 LRRC71Q8N4P6 559 aa9.04□□□□□ -0.96
RNF4-220ENST00000513578 MNS1Q8NEH6 495 aa9.04□□□□□ -0.96
RNF4-220ENST00000513578 LNX1Q8TBB1 728 aaPredicted RBP9.04□□□□□ -0.96
RNF4-220ENST00000513578 TAS1R2Q8TE23 839 aa9.04□□□□□ -0.96
RNF4-220ENST00000513578 ZNF516Q92618 1163 aa9.04□□□□□ -0.96
RNF4-220ENST00000513578 CCDC127Q96BQ5 260 aa9.04□□□□□ -0.96
RNF4-220ENST00000513578 FAXDC2Q96IV6 333 aa9.04□□□□□ -0.96
RNF4-220ENST00000513578 ZBTB45Q96K62 511 aaPredicted RBP9.04□□□□□ -0.96
RNF4-220ENST00000513578 RPGRIP1Q96KN7 1286 aa9.04□□□□□ -0.96
RNF4-220ENST00000513578 KREMEN1Q96MU8 473 aa9.04□□□□□ -0.96
RNF4-220ENST00000513578 FNBP1Q96RU3 617 aa9.04□□□□□ -0.96
RNF4-220ENST00000513578 APBA2Q99767 749 aa9.04□□□□□ -0.96
RNF4-220ENST00000513578 AGPAT1Q99943 283 aa9.04□□□□□ -0.96
RNF4-220ENST00000513578 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP9.04□□□□□ -0.96
RNF4-220ENST00000513578 CARD6Q9BX69 1037 aa9.04□□□□□ -0.96
RNF4-220ENST00000513578 RBAKQ9NYW8 714 aaPredicted RBP9.04□□□□□ -0.96
RNF4-220ENST00000513578 CPSF3Q9UKF6 684 aaKnown RBP9.04□□□□□ -0.96
RNF4-220ENST00000513578 SAR1BQ9Y6B6 198 aa9.04□□□□□ -0.96
RNF4-220ENST00000513578 DUSP10Q9Y6W6 482 aa9.04□□□□□ -0.96
RNF4-220ENST00000513578 PDE4DIPQ5VU43 2346 aa9.04□□□□□ -0.96
RNF4-220ENST00000513578 PDCD11Q14690 1871 aaKnown RBP9.04□□□□□ -0.96
RNF4-220ENST00000513578 NCANO14594 1321 aa9.04□□□□□ -0.96
RNF4-220ENST00000513578 HAS3O00219 553 aa9.03□□□□□ -0.96
RNF4-220ENST00000513578 CA12O43570 354 aa9.03□□□□□ -0.96
RNF4-220ENST00000513578 ZEB2O60315 1214 aa9.03□□□□□ -0.96
RNF4-220ENST00000513578 ALDH1A1P00352 501 aa9.03□□□□□ -0.96
RNF4-220ENST00000513578 F2P00734 622 aa9.03□□□□□ -0.96
RNF4-220ENST00000513578 TMEM253P0C7T8 217 aa9.03□□□□□ -0.96
RNF4-220ENST00000513578 SRGAP2CP0DJJ0 459 aa9.03□□□□□ -0.96
RNF4-220ENST00000513578 MCF2P10911 925 aa9.03□□□□□ -0.96
RNF4-220ENST00000513578 TCP1P17987 556 aaKnown RBP9.03□□□□□ -0.96
RNF4-220ENST00000513578 TNFAIP3P21580 790 aa9.03□□□□□ -0.96
RNF4-220ENST00000513578 NKX3-2P78367 333 aa9.03□□□□□ -0.96
RNF4-220ENST00000513578 ARID5AQ03989 594 aa9.03□□□□□ -0.96
RNF4-220ENST00000513578 ITIH3Q06033 890 aa9.03□□□□□ -0.96
RNF4-220ENST00000513578 ARHGAP44Q17R89 818 aa9.03□□□□□ -0.96
RNF4-220ENST00000513578 GJC2Q5T442 439 aaPredicted RBP9.03□□□□□ -0.96
RNF4-220ENST00000513578 ZNF572Q7Z3I7 529 aaPredicted RBP9.03□□□□□ -0.96
RNF4-220ENST00000513578 ZNF677Q86XU0 584 aa9.03□□□□□ -0.96
RNF4-220ENST00000513578 RHPN2Q8IUC4 686 aa9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms