RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 FNTAP49354 379 aa8.95□□□□□ -0.98
LIMCH1-216ENST00000512820 ITIH4Q14624 930 aa8.95□□□□□ -0.98
LIMCH1-216ENST00000512820 GPD1LQ8N335 351 aa8.95□□□□□ -0.98
LIMCH1-216ENST00000512820 RPS6KC1Q96S38 1066 aa8.95□□□□□ -0.98
LIMCH1-216ENST00000512820 TRIM4Q9C037 500 aa8.95□□□□□ -0.98
LIMCH1-216ENST00000512820 MIS12Q9H081 205 aa8.95□□□□□ -0.98
LIMCH1-216ENST00000512820 STOML1Q9UBI4 398 aa8.95□□□□□ -0.98
LIMCH1-216ENST00000512820 IP6K2Q9UHH9 426 aa8.95□□□□□ -0.98
LIMCH1-216ENST00000512820 SUFUQ9UMX1 484 aa8.95□□□□□ -0.98
LIMCH1-216ENST00000512820 TRAPPC3O43617 180 aa8.94□□□□□ -0.98
LIMCH1-216ENST00000512820 HAUS5O94927 633 aa8.94□□□□□ -0.98
LIMCH1-216ENST00000512820 PDHA1P08559 390 aa8.94□□□□□ -0.98
LIMCH1-216ENST00000512820 MMP10P09238 476 aa8.94□□□□□ -0.98
LIMCH1-216ENST00000512820 YARSP54577 528 aaKnown RBP8.94□□□□□ -0.98
LIMCH1-216ENST00000512820 ITGB3BPQ13352 177 aaPredicted RBP8.94□□□□□ -0.98
LIMCH1-216ENST00000512820 P3H1Q32P28 736 aa8.94□□□□□ -0.98
LIMCH1-216ENST00000512820 COBLL1Q53SF7 1204 aa8.94□□□□□ -0.98
LIMCH1-216ENST00000512820 EIF1ADQ8N9N8 165 aaKnown RBP8.94□□□□□ -0.98
LIMCH1-216ENST00000512820 SMC1BQ8NDV3 1235 aa8.94□□□□□ -0.98
LIMCH1-216ENST00000512820 ANKRD36BP1Q96IX9 119 aa8.94□□□□□ -0.98
LIMCH1-216ENST00000512820 TTYH3Q9C0H2 523 aa8.94□□□□□ -0.98
LIMCH1-216ENST00000512820 TMEM117Q9H0C3 514 aa8.94□□□□□ -0.98
LIMCH1-216ENST00000512820 ATP6V0A4Q9HBG4 840 aa8.94□□□□□ -0.98
LIMCH1-216ENST00000512820 KLHL11Q9NVR0 708 aa8.94□□□□□ -0.98
LIMCH1-216ENST00000512820 FAM47DPA6NHR8 397 aa8.94□□□□□ -0.98
LIMCH1-216ENST00000512820 AGPSO00116 658 aa8.94□□□□□ -0.98
LIMCH1-216ENST00000512820 SGPL1O95470 568 aa8.94□□□□□ -0.98
LIMCH1-216ENST00000512820 CALB1P05937 261 aa8.94□□□□□ -0.98
LIMCH1-216ENST00000512820 PSMC4P43686 418 aa8.94□□□□□ -0.98
LIMCH1-216ENST00000512820 CDR2Q01850 454 aa8.94□□□□□ -0.98
LIMCH1-216ENST00000512820 TRADDQ15628 312 aa8.94□□□□□ -0.98
LIMCH1-216ENST00000512820 KLHL38Q2WGJ6 581 aa8.94□□□□□ -0.98
LIMCH1-216ENST00000512820 PCGF5Q86SE9 256 aa8.94□□□□□ -0.98
LIMCH1-216ENST00000512820 IQCKQ8N0W5 287 aa8.94□□□□□ -0.98
LIMCH1-216ENST00000512820 CNPY4Q8N129 248 aa8.94□□□□□ -0.98
LIMCH1-216ENST00000512820 SLC20A1Q8WUM9 679 aa8.94□□□□□ -0.98
LIMCH1-216ENST00000512820 SERPINB12Q96P63 405 aa8.94□□□□□ -0.98
LIMCH1-216ENST00000512820 PURBQ96QR8 312 aaKnown RBP8.94□□□□□ -0.98
LIMCH1-216ENST00000512820 YIPF3Q9GZM5 350 aa8.94□□□□□ -0.98
LIMCH1-216ENST00000512820 YY1AP1Q9H869 796 aa8.94□□□□□ -0.98
LIMCH1-216ENST00000512820 GABBR1Q9UBS5 961 aa8.94□□□□□ -0.98
LIMCH1-216ENST00000512820 GTF3C4Q9UKN8 822 aa8.94□□□□□ -0.98
LIMCH1-216ENST00000512820 LDHAP00338 332 aaKnown RBP8.94□□□□□ -0.98
LIMCH1-216ENST00000512820 CCND1P24385 295 aa8.94□□□□□ -0.98
LIMCH1-216ENST00000512820 SFNP31947 248 aa8.94□□□□□ -0.98
LIMCH1-216ENST00000512820 SERPINB6P35237 376 aa8.94□□□□□ -0.98
LIMCH1-216ENST00000512820 SREBF1P36956 1147 aa8.94□□□□□ -0.98
LIMCH1-216ENST00000512820 PDE1BQ01064 536 aa8.94□□□□□ -0.98
LIMCH1-216ENST00000512820 EPC2Q52LR7 807 aa8.94□□□□□ -0.98
LIMCH1-216ENST00000512820 CAPRIN2Q6IMN6 1127 aaKnown RBP8.94□□□□□ -0.98
LIMCH1-216ENST00000512820 SEPT14Q6ZU15 432 aa8.94□□□□□ -0.98
LIMCH1-216ENST00000512820 C4orf33Q8N1A6 199 aa8.94□□□□□ -0.98
LIMCH1-216ENST00000512820 ERP27Q96DN0 273 aa8.94□□□□□ -0.98
LIMCH1-216ENST00000512820 INPP4AQ96PE3 977 aaPredicted RBP8.94□□□□□ -0.98
LIMCH1-216ENST00000512820 MED7O43513 233 aa8.94□□□□□ -0.98
LIMCH1-216ENST00000512820 COPS2P61201 443 aa8.94□□□□□ -0.98
LIMCH1-216ENST00000512820 OSTNP61366 133 aa8.94□□□□□ -0.98
LIMCH1-216ENST00000512820 IRX4P78413 519 aa8.94□□□□□ -0.98
LIMCH1-216ENST00000512820 NFIAQ12857 509 aa8.94□□□□□ -0.98
LIMCH1-216ENST00000512820 COG2Q14746 738 aa8.94□□□□□ -0.98
LIMCH1-216ENST00000512820 RBBP5Q15291 538 aaKnown RBP8.94□□□□□ -0.98
LIMCH1-216ENST00000512820 GRIK5Q16478 980 aa8.94□□□□□ -0.98
LIMCH1-216ENST00000512820 BTNL9Q6UXG8 535 aa8.94□□□□□ -0.98
LIMCH1-216ENST00000512820 TRIM72Q6ZMU5 477 aa8.94□□□□□ -0.98
LIMCH1-216ENST00000512820 TTC13Q8NBP0 860 aa8.94□□□□□ -0.98
LIMCH1-216ENST00000512820 ATP8B4Q8TF62 1192 aa8.94□□□□□ -0.98
LIMCH1-216ENST00000512820 HSPH1Q92598 858 aa8.94□□□□□ -0.98
LIMCH1-216ENST00000512820 CDKL2Q92772 493 aa8.94□□□□□ -0.98
LIMCH1-216ENST00000512820 HAS1Q92839 578 aa8.94□□□□□ -0.98
LIMCH1-216ENST00000512820 SENP1Q9P0U3 644 aa8.94□□□□□ -0.98
LIMCH1-216ENST00000512820 PPARGC1AQ9UBK2 798 aaKnown RBP8.94□□□□□ -0.98
LIMCH1-216ENST00000512820 POLLQ9UGP5 575 aa8.94□□□□□ -0.98
LIMCH1-216ENST00000512820 WDR3Q9UNX4 943 aaKnown RBP eCLIP8.94□□□□□ -0.98
LIMCH1-216ENST00000512820 RGPD1P0DJD0 1748 aa8.94□□□□□ -0.98
LIMCH1-216ENST00000512820 CFAP69A5D8W1 941 aa8.93□□□□□ -0.98
LIMCH1-216ENST00000512820 INO80B-WBP1J3KQ70 363 aa8.93□□□□□ -0.98
LIMCH1-216ENST00000512820 COPEO14579 308 aa8.93□□□□□ -0.98
LIMCH1-216ENST00000512820 ARFIP2P53365 341 aa8.93□□□□□ -0.98
LIMCH1-216ENST00000512820 Q4G0T1 1027 aa8.93□□□□□ -0.98
LIMCH1-216ENST00000512820 MAP3K21Q5TCX8 1036 aa8.93□□□□□ -0.98
LIMCH1-216ENST00000512820 FAM160B1Q5W0V3 765 aa8.93□□□□□ -0.98
LIMCH1-216ENST00000512820 ZNF720Q7Z2F6 126 aa8.93□□□□□ -0.98
LIMCH1-216ENST00000512820 UBXN6Q9BZV1 441 aa8.93□□□□□ -0.98
LIMCH1-216ENST00000512820 INO80BQ9C086 356 aaPredicted RBP8.93□□□□□ -0.98
LIMCH1-216ENST00000512820 GANQ9H2C0 597 aa8.93□□□□□ -0.98
LIMCH1-216ENST00000512820 HESX1Q9UBX0 185 aa8.93□□□□□ -0.98
LIMCH1-216ENST00000512820 USH1CQ9Y6N9 552 aa8.93□□□□□ -0.98
LIMCH1-216ENST00000512820 TOM1L1O75674 476 aa8.93□□□□□ -0.98
LIMCH1-216ENST00000512820 TMPRSS15P98073 1019 aa8.93□□□□□ -0.98
LIMCH1-216ENST00000512820 SWSAP1Q6NVH7 229 aa8.93□□□□□ -0.98
LIMCH1-216ENST00000512820 ZNF354CQ86Y25 554 aa8.93□□□□□ -0.98
LIMCH1-216ENST00000512820 ANKMY2Q8IV38 441 aa8.93□□□□□ -0.98
LIMCH1-216ENST00000512820 ATP11CQ8NB49 1132 aa8.93□□□□□ -0.98
LIMCH1-216ENST00000512820 OSBPL8Q9BZF1 889 aa8.93□□□□□ -0.98
LIMCH1-216ENST00000512820 OLFML3Q9NRN5 406 aa8.93□□□□□ -0.98
LIMCH1-216ENST00000512820 PARVAQ9NVD7 372 aa8.93□□□□□ -0.98
LIMCH1-216ENST00000512820 GEMIN8Q9NWZ8 242 aaKnown RBP8.93□□□□□ -0.98
LIMCH1-216ENST00000512820 ANGPTL2Q9UKU9 493 aa8.93□□□□□ -0.98
LIMCH1-216ENST00000512820 SMG5Q9UPR3 1016 aaKnown RBP8.93□□□□□ -0.98
LIMCH1-216ENST00000512820 NEU2Q9Y3R4 380 aa8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms