RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 GH1P01241 217 aa9.91□□□□□ -0.82
LIMCH1-215ENST00000512632 GHRP10912 638 aa9.91□□□□□ -0.82
LIMCH1-215ENST00000512632 HADHBP55084 474 aaKnown RBP9.91□□□□□ -0.82
LIMCH1-215ENST00000512632 KCNJ2P63252 427 aa9.91□□□□□ -0.82
LIMCH1-215ENST00000512632 MIGA2Q7L4E1 593 aa9.91□□□□□ -0.82
LIMCH1-215ENST00000512632 TAOK1Q7L7X3 1001 aa9.91□□□□□ -0.82
LIMCH1-215ENST00000512632 LDHDQ86WU2 507 aa9.91□□□□□ -0.82
LIMCH1-215ENST00000512632 IL31RAQ8NI17 732 aa9.91□□□□□ -0.82
LIMCH1-215ENST00000512632 AGBL1Q96MI9 1066 aa9.91□□□□□ -0.82
LIMCH1-215ENST00000512632 HERPUD2Q9BSE4 406 aa9.91□□□□□ -0.82
LIMCH1-215ENST00000512632 AAASQ9NRG9 546 aa9.91□□□□□ -0.82
LIMCH1-215ENST00000512632 HOMER3Q9NSC5 361 aa9.91□□□□□ -0.82
LIMCH1-215ENST00000512632 ANAPC7Q9UJX3 599 aa9.91□□□□□ -0.82
LIMCH1-215ENST00000512632 SNX3O60493 162 aa9.91□□□□□ -0.82
LIMCH1-215ENST00000512632 DNAJC8O75937 253 aaPredicted RBP9.91□□□□□ -0.82
LIMCH1-215ENST00000512632 CYP11B1P15538 503 aa9.91□□□□□ -0.82
LIMCH1-215ENST00000512632 GJC1P36383 396 aa9.91□□□□□ -0.82
LIMCH1-215ENST00000512632 CLUL1Q15846 466 aa9.91□□□□□ -0.82
LIMCH1-215ENST00000512632 PRUNE1Q86TP1 453 aa9.91□□□□□ -0.82
LIMCH1-215ENST00000512632 FAM71AQ8IYT1 594 aa9.91□□□□□ -0.82
LIMCH1-215ENST00000512632 P3H4Q92791 437 aa9.91□□□□□ -0.82
LIMCH1-215ENST00000512632 CD101Q93033 1021 aa9.91□□□□□ -0.82
LIMCH1-215ENST00000512632 THOC1Q96FV9 657 aaKnown RBP9.91□□□□□ -0.82
LIMCH1-215ENST00000512632 STRA6Q9BX79 667 aa9.91□□□□□ -0.82
LIMCH1-215ENST00000512632 TMEM206Q9H813 350 aa9.91□□□□□ -0.82
LIMCH1-215ENST00000512632 KCNH7Q9NS40 1196 aa9.91□□□□□ -0.82
LIMCH1-215ENST00000512632 ALAS1P13196 640 aa9.91□□□□□ -0.82
LIMCH1-215ENST00000512632 ALDH1B1P30837 517 aa9.91□□□□□ -0.82
LIMCH1-215ENST00000512632 SSTR3P32745 418 aaPredicted RBP9.91□□□□□ -0.82
LIMCH1-215ENST00000512632 RARRES1P49788 294 aa9.91□□□□□ -0.82
LIMCH1-215ENST00000512632 MPP2Q14168 576 aa9.91□□□□□ -0.82
LIMCH1-215ENST00000512632 ACCSLQ4AC99 568 aa9.91□□□□□ -0.82
LIMCH1-215ENST00000512632 STRIP1Q5VSL9 837 aa9.91□□□□□ -0.82
LIMCH1-215ENST00000512632 SEPT12Q8IYM1 358 aa9.91□□□□□ -0.82
LIMCH1-215ENST00000512632 TAS1R2Q8TE23 839 aa9.91□□□□□ -0.82
LIMCH1-215ENST00000512632 GLIS2Q9BZE0 524 aaPredicted RBP9.91□□□□□ -0.82
LIMCH1-215ENST00000512632 ARHGEF10LQ9HCE6 1279 aa9.91□□□□□ -0.82
LIMCH1-215ENST00000512632 HOMER2Q9NSB8 354 aa9.91□□□□□ -0.82
LIMCH1-215ENST00000512632 MRPL11Q9Y3B7 192 aaKnown RBP9.91□□□□□ -0.82
LIMCH1-215ENST00000512632 MGRN1O60291 552 aa9.91□□□□□ -0.82
LIMCH1-215ENST00000512632 ATP6V1G2O95670 118 aa9.91□□□□□ -0.82
LIMCH1-215ENST00000512632 VIL1P09327 827 aaKnown RBP9.91□□□□□ -0.82
LIMCH1-215ENST00000512632 PDE6CP51160 858 aa9.91□□□□□ -0.82
LIMCH1-215ENST00000512632 RUNDC3BQ96NL0 473 aa9.91□□□□□ -0.82
LIMCH1-215ENST00000512632 UBE4BO95155 1302 aa9.91□□□□□ -0.82
LIMCH1-215ENST00000512632 GZMAP12544 262 aa9.9□□□□□ -0.82
LIMCH1-215ENST00000512632 BRAFP15056 766 aa9.9□□□□□ -0.82
LIMCH1-215ENST00000512632 RFX1P22670 979 aa9.9□□□□□ -0.82
LIMCH1-215ENST00000512632 ELF1P32519 619 aa9.9□□□□□ -0.82
LIMCH1-215ENST00000512632 FAM102BQ5T8I3 360 aa9.9□□□□□ -0.82
LIMCH1-215ENST00000512632 PLA2G4FQ68DD2 849 aa9.9□□□□□ -0.82
LIMCH1-215ENST00000512632 CDAN1Q8IWY9 1227 aa9.9□□□□□ -0.82
LIMCH1-215ENST00000512632 C9orf72Q96LT7 481 aa9.9□□□□□ -0.82
LIMCH1-215ENST00000512632 PAIP2Q9BPZ3 127 aaKnown RBP9.9□□□□□ -0.82
LIMCH1-215ENST00000512632 MXRA8Q9BRK3 442 aa9.9□□□□□ -0.82
LIMCH1-215ENST00000512632 NSRP1Q9H0G5 558 aaKnown RBP9.9□□□□□ -0.82
LIMCH1-215ENST00000512632 STK38LQ9Y2H1 464 aa9.9□□□□□ -0.82
LIMCH1-215ENST00000512632 MAPK4P31152 587 aa9.9□□□□□ -0.82
LIMCH1-215ENST00000512632 ADCY8P40145 1251 aa9.9□□□□□ -0.82
LIMCH1-215ENST00000512632 SSR1P43307 286 aaKnown RBP9.9□□□□□ -0.82
LIMCH1-215ENST00000512632 MFAP3P55082 362 aa9.9□□□□□ -0.82
LIMCH1-215ENST00000512632 SOX10P56693 466 aa9.9□□□□□ -0.82
LIMCH1-215ENST00000512632 ITIH4Q14624 930 aa9.9□□□□□ -0.82
LIMCH1-215ENST00000512632 CCDC50Q8IVM0 306 aa9.9□□□□□ -0.82
LIMCH1-215ENST00000512632 CYP4X1Q8N118 509 aa9.9□□□□□ -0.82
LIMCH1-215ENST00000512632 KCTD17Q8N5Z5 321 aa9.9□□□□□ -0.82
LIMCH1-215ENST00000512632 STMN4Q9H169 189 aaPredicted RBP9.9□□□□□ -0.82
LIMCH1-215ENST00000512632 COL20A1Q9P218 1284 aa9.9□□□□□ -0.82
LIMCH1-215ENST00000512632 MCM8Q9UJA3 840 aa9.9□□□□□ -0.82
LIMCH1-215ENST00000512632 GTF3C4Q9UKN8 822 aa9.9□□□□□ -0.82
LIMCH1-215ENST00000512632 SCAF8Q9UPN6 1271 aaKnown RBP9.9□□□□□ -0.82
LIMCH1-215ENST00000512632 ADAMTSL1Q8N6G6 1762 aa9.9□□□□□ -0.82
LIMCH1-215ENST00000512632 TP73O15350 636 aa9.9□□□□□ -0.82
LIMCH1-215ENST00000512632 GGPS1O95749 300 aa9.9□□□□□ -0.82
LIMCH1-215ENST00000512632 P4HBP07237 508 aaKnown RBP9.9□□□□□ -0.82
LIMCH1-215ENST00000512632 ITGA8P53708 1063 aa9.9□□□□□ -0.82
LIMCH1-215ENST00000512632 CHURC1Q8WUH1 139 aa9.9□□□□□ -0.82
LIMCH1-215ENST00000512632 CPA5Q8WXQ8 436 aa9.9□□□□□ -0.82
LIMCH1-215ENST00000512632 STAMBPL1Q96FJ0 436 aa9.9□□□□□ -0.82
LIMCH1-215ENST00000512632 GJD4Q96KN9 370 aaPredicted RBP9.9□□□□□ -0.82
LIMCH1-215ENST00000512632 KCND2Q9NZV8 630 aa9.9□□□□□ -0.82
LIMCH1-215ENST00000512632 PNMA3Q9UL41 463 aa9.9□□□□□ -0.82
LIMCH1-215ENST00000512632 R3HDM2Q9Y2K5 976 aaKnown RBP9.9□□□□□ -0.82
LIMCH1-215ENST00000512632 O00370 1275 aa9.9□□□□□ -0.83
LIMCH1-215ENST00000512632 THAP12O43422 761 aa9.9□□□□□ -0.83
LIMCH1-215ENST00000512632 TOM1O60784 492 aa9.9□□□□□ -0.83
LIMCH1-215ENST00000512632 MMP10P09238 476 aa9.9□□□□□ -0.83
LIMCH1-215ENST00000512632 PLS3P13797 630 aa9.9□□□□□ -0.83
LIMCH1-215ENST00000512632 GBP1P32455 592 aa9.9□□□□□ -0.83
LIMCH1-215ENST00000512632 SNRNP35Q16560 246 aaKnown RBP9.9□□□□□ -0.83
LIMCH1-215ENST00000512632 AOC3Q16853 763 aa9.9□□□□□ -0.83
LIMCH1-215ENST00000512632 HP1BP3Q5SSJ5 553 aaPredicted RBP9.9□□□□□ -0.83
LIMCH1-215ENST00000512632 WLSQ5T9L3 541 aa9.9□□□□□ -0.83
LIMCH1-215ENST00000512632 LMBRD2Q68DH5 695 aaPredicted RBP9.9□□□□□ -0.83
LIMCH1-215ENST00000512632 VSTM1Q6UX27 236 aa9.9□□□□□ -0.83
LIMCH1-215ENST00000512632 SRRM1Q8IYB3 904 aaKnown RBP9.9□□□□□ -0.83
LIMCH1-215ENST00000512632 SHC3Q92529 594 aa9.9□□□□□ -0.83
LIMCH1-215ENST00000512632 ADAM33Q9BZ11 813 aa9.9□□□□□ -0.83
LIMCH1-215ENST00000512632 USP20Q9Y2K6 914 aa9.9□□□□□ -0.83
LIMCH1-215ENST00000512632 USP15Q9Y4E8 981 aaPredicted RBP9.9□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms