RNA–Protein interactions for RNA: ENST00000506690.1

SQSTM1-211, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 2,405 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-211ENST00000506690 DENND2DQ9H6A0 471 aaPredicted RBP18.28■□□□□ 0.52
SQSTM1-211ENST00000506690 FOXN3O00409 490 aaPredicted RBP18.28■□□□□ 0.52
SQSTM1-211ENST00000506690 DCTN3O75935 186 aa18.28■□□□□ 0.52
SQSTM1-211ENST00000506690 CHRNB2P17787 502 aa18.28■□□□□ 0.52
SQSTM1-211ENST00000506690 RPA1P27694 616 aa18.28■□□□□ 0.52
SQSTM1-211ENST00000506690 EPHB2P29323 1055 aa18.28■□□□□ 0.52
SQSTM1-211ENST00000506690 TNIP1Q15025 636 aa18.28■□□□□ 0.52
SQSTM1-211ENST00000506690 SPDYAQ5MJ70 313 aa18.28■□□□□ 0.52
SQSTM1-211ENST00000506690 PPP1R15BQ5SWA1 713 aa18.28■□□□□ 0.52
SQSTM1-211ENST00000506690 IRGCQ6NXR0 463 aa18.28■□□□□ 0.52
SQSTM1-211ENST00000506690 BICDL1Q6ZP65 573 aa18.28■□□□□ 0.52
SQSTM1-211ENST00000506690 RNF207Q6ZRF8 634 aa18.28■□□□□ 0.52
SQSTM1-211ENST00000506690 SLFN12Q8IYM2 578 aa18.28■□□□□ 0.52
SQSTM1-211ENST00000506690 ZNF333Q96JL9 665 aa18.28■□□□□ 0.52
SQSTM1-211ENST00000506690 RTFDC1Q9BY42 306 aaPredicted RBP18.28■□□□□ 0.52
SQSTM1-211ENST00000506690 TLE6Q9H808 572 aa18.28■□□□□ 0.52
SQSTM1-211ENST00000506690 DCLRE1BQ9H816 532 aa18.28■□□□□ 0.52
SQSTM1-211ENST00000506690 PSTPIP2Q9H939 334 aa18.28■□□□□ 0.52
SQSTM1-211ENST00000506690 GPCPD1Q9NPB8 672 aa18.28■□□□□ 0.52
SQSTM1-211ENST00000506690 NINJ2Q9NZG7 142 aa18.28■□□□□ 0.52
SQSTM1-211ENST00000506690 USP21Q9UK80 565 aa18.28■□□□□ 0.52
SQSTM1-211ENST00000506690 SIGLEC16A6NMB1 481 aa18.27■□□□□ 0.52
SQSTM1-211ENST00000506690 ENTPD5O75356 428 aa18.27■□□□□ 0.52
SQSTM1-211ENST00000506690 ASMTLO95671 621 aa18.27■□□□□ 0.52
SQSTM1-211ENST00000506690 LMNAP02545 664 aaKnown RBP18.27■□□□□ 0.52
SQSTM1-211ENST00000506690 RASSF2P50749 326 aa18.27■□□□□ 0.52
SQSTM1-211ENST00000506690 ARHGAP44Q17R89 818 aa18.27■□□□□ 0.52
SQSTM1-211ENST00000506690 PHLDB3Q6NSJ2 640 aa18.27■□□□□ 0.52
SQSTM1-211ENST00000506690 FBXO41Q8TF61 875 aa18.27■□□□□ 0.52
SQSTM1-211ENST00000506690 RUSC1Q9BVN2 902 aa18.27■□□□□ 0.52
SQSTM1-211ENST00000506690 OLFML3Q9NRN5 406 aa18.27■□□□□ 0.52
SQSTM1-211ENST00000506690 TBK1Q9UHD2 729 aa18.27■□□□□ 0.52
SQSTM1-211ENST00000506690 PHTF1Q9UMS5 762 aa18.27■□□□□ 0.52
SQSTM1-211ENST00000506690 FAM47DPA6NHR8 397 aa18.27■□□□□ 0.51
SQSTM1-211ENST00000506690 H0Y3Z8 333 aa18.27■□□□□ 0.51
SQSTM1-211ENST00000506690 THAP12O43422 761 aa18.27■□□□□ 0.51
SQSTM1-211ENST00000506690 ECE2O60344 883 aa18.27■□□□□ 0.51
SQSTM1-211ENST00000506690 MYBL1P10243 752 aa18.27■□□□□ 0.51
SQSTM1-211ENST00000506690 CLEC4GQ6UXB4 293 aa18.27■□□□□ 0.51
SQSTM1-211ENST00000506690 RGS9BPQ6ZS82 235 aa18.27■□□□□ 0.51
SQSTM1-211ENST00000506690 SNF8Q96H20 258 aa18.27■□□□□ 0.51
SQSTM1-211ENST00000506690 IKZF4Q9H2S9 585 aa18.27■□□□□ 0.51
SQSTM1-211ENST00000506690 VCXQ9H320 206 aa18.27■□□□□ 0.51
SQSTM1-211ENST00000506690 SDAD1Q9NVU7 687 aaKnown RBP eCLIP18.27■□□□□ 0.51
SQSTM1-211ENST00000506690 MTMR4Q9NYA4 1195 aa18.27■□□□□ 0.51
SQSTM1-211ENST00000506690 DLGAP2Q9P1A6 1054 aa18.27■□□□□ 0.51
SQSTM1-211ENST00000506690 RFC5P40937 340 aa18.26■□□□□ 0.51
SQSTM1-211ENST00000506690 SLC10A5Q5PT55 438 aa18.26■□□□□ 0.51
SQSTM1-211ENST00000506690 LRRC47Q8N1G4 583 aaKnown RBP18.26■□□□□ 0.51
SQSTM1-211ENST00000506690 ANKRD35Q8N283 1001 aa18.26■□□□□ 0.51
SQSTM1-211ENST00000506690 ASIC3Q9UHC3 531 aa18.26■□□□□ 0.51
SQSTM1-211ENST00000506690 PLIN4Q96Q06 1357 aa18.26■□□□□ 0.51
SQSTM1-211ENST00000506690 EIF3DO15371 548 aaKnown RBP eCLIP18.25■□□□□ 0.51
SQSTM1-211ENST00000506690 LRRN2O75325 713 aa18.25■□□□□ 0.51
SQSTM1-211ENST00000506690 LDHCP07864 332 aa18.25■□□□□ 0.51
SQSTM1-211ENST00000506690 RFX1P22670 979 aa18.25■□□□□ 0.51
SQSTM1-211ENST00000506690 ADCY1Q08828 1119 aa18.25■□□□□ 0.51
SQSTM1-211ENST00000506690 DNAJC3Q13217 504 aa18.25■□□□□ 0.51
SQSTM1-211ENST00000506690 MUM1Q2TAK8 710 aa18.25■□□□□ 0.51
SQSTM1-211ENST00000506690 NMRK1Q9NWW6 199 aa18.25■□□□□ 0.51
SQSTM1-211ENST00000506690 NVLO15381 856 aaKnown RBP18.25■□□□□ 0.51
SQSTM1-211ENST00000506690 ITGA8P53708 1063 aa18.25■□□□□ 0.51
SQSTM1-211ENST00000506690 CAV1Q03135 178 aa18.25■□□□□ 0.51
SQSTM1-211ENST00000506690 ZNF543Q08ER8 600 aa18.25■□□□□ 0.51
SQSTM1-211ENST00000506690 RNF220Q5VTB9 566 aa18.25■□□□□ 0.51
SQSTM1-211ENST00000506690 PTF1AQ7RTS3 328 aa18.25■□□□□ 0.51
SQSTM1-211ENST00000506690 CPNE8Q86YQ8 564 aa18.25■□□□□ 0.51
SQSTM1-211ENST00000506690 ERMNQ8TAM6 284 aa18.25■□□□□ 0.51
SQSTM1-211ENST00000506690 ETNPPLQ8TBG4 499 aa18.25■□□□□ 0.51
SQSTM1-211ENST00000506690 DNAJC17Q9NVM6 304 aaKnown RBP18.25■□□□□ 0.51
SQSTM1-211ENST00000506690 CHORDC1Q9UHD1 332 aaPredicted RBP18.25■□□□□ 0.51
SQSTM1-211ENST00000506690 LRCH1Q9Y2L9 728 aa18.25■□□□□ 0.51
SQSTM1-211ENST00000506690 IRF6O14896 467 aa18.24■□□□□ 0.51
SQSTM1-211ENST00000506690 FSCN2O14926 492 aa18.24■□□□□ 0.51
SQSTM1-211ENST00000506690 TBCAO75347 108 aaKnown RBP18.24■□□□□ 0.51
SQSTM1-211ENST00000506690 DLATP10515 647 aaKnown RBP18.24■□□□□ 0.51
SQSTM1-211ENST00000506690 PTK6Q13882 451 aa18.24■□□□□ 0.51
SQSTM1-211ENST00000506690 ZNF449Q6P9G9 518 aa18.24■□□□□ 0.51
SQSTM1-211ENST00000506690 SYDE1Q6ZW31 735 aaPredicted RBP18.24■□□□□ 0.51
SQSTM1-211ENST00000506690 DRAXINQ8NBI3 349 aaPredicted RBP18.24■□□□□ 0.51
SQSTM1-211ENST00000506690 LMO3Q8TAP4 145 aa18.24■□□□□ 0.51
SQSTM1-211ENST00000506690 DENND1AQ8TEH3 1009 aa18.24■□□□□ 0.51
SQSTM1-211ENST00000506690 UCMAQ8WVF2 138 aa18.24■□□□□ 0.51
SQSTM1-211ENST00000506690 C10orf82Q8WW14 230 aa18.24■□□□□ 0.51
SQSTM1-211ENST00000506690 C1orf54Q8WWF1 131 aa18.24■□□□□ 0.51
SQSTM1-211ENST00000506690 MAML1Q92585 1016 aa18.24■□□□□ 0.51
SQSTM1-211ENST00000506690 KIFAP3Q92845 792 aa18.24■□□□□ 0.51
SQSTM1-211ENST00000506690 TRAPPC9Q96Q05 1148 aa18.24■□□□□ 0.51
SQSTM1-211ENST00000506690 STOML1Q9UBI4 398 aa18.24■□□□□ 0.51
SQSTM1-211ENST00000506690 RASA4BC9J798 803 aa18.24■□□□□ 0.51
SQSTM1-211ENST00000506690 RASA4O43374 803 aa18.24■□□□□ 0.51
SQSTM1-211ENST00000506690 CBX6O95503 412 aa18.24■□□□□ 0.51
SQSTM1-211ENST00000506690 MUTP22033 750 aa18.24■□□□□ 0.51
SQSTM1-211ENST00000506690 PTPN4P29074 926 aa18.24■□□□□ 0.51
SQSTM1-211ENST00000506690 VHLP40337 213 aa18.24■□□□□ 0.51
SQSTM1-211ENST00000506690 STAT4Q14765 748 aa18.24■□□□□ 0.51
SQSTM1-211ENST00000506690 SGO2Q562F6 1265 aa18.24■□□□□ 0.51
SQSTM1-211ENST00000506690 LINC00116Q8NCU8 138 aa18.24■□□□□ 0.51
SQSTM1-211ENST00000506690 SPOCK2Q92563 424 aa18.24■□□□□ 0.51
SQSTM1-211ENST00000506690 LNPEPQ9UIQ6 1025 aa18.24■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 88 ms