RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 SPATA31A7Q8IWB4 1347 aa10.35□□□□□ -0.75
SYNE1-230ENST00000495090 WNK3Q9BYP7 1800 aa10.35□□□□□ -0.75
SYNE1-230ENST00000495090 LOC102724428A0A0B4J2F2 783 aa10.35□□□□□ -0.75
SYNE1-230ENST00000495090 THAP12O43422 761 aa10.35□□□□□ -0.75
SYNE1-230ENST00000495090 GM2AP17900 193 aa10.35□□□□□ -0.75
SYNE1-230ENST00000495090 SP100P23497 879 aaPredicted RBP10.35□□□□□ -0.75
SYNE1-230ENST00000495090 IVDP26440 423 aa10.35□□□□□ -0.75
SYNE1-230ENST00000495090 FOXN2P32314 431 aa10.35□□□□□ -0.75
SYNE1-230ENST00000495090 SIK1P57059 783 aa10.35□□□□□ -0.75
SYNE1-230ENST00000495090 MYL7Q01449 175 aa10.35□□□□□ -0.75
SYNE1-230ENST00000495090 OCRLQ01968 901 aa10.35□□□□□ -0.75
SYNE1-230ENST00000495090 PABPC4Q13310 644 aaKnown RBP eCLIP10.35□□□□□ -0.75
SYNE1-230ENST00000495090 MYBPC2Q14324 1141 aa10.35□□□□□ -0.75
SYNE1-230ENST00000495090 Q4G0T1 1027 aa10.35□□□□□ -0.75
SYNE1-230ENST00000495090 GRIPAP1Q4V328 841 aa10.35□□□□□ -0.75
SYNE1-230ENST00000495090 BBOF1Q8ND07 529 aa10.35□□□□□ -0.75
SYNE1-230ENST00000495090 BICD1Q96G01 975 aa10.35□□□□□ -0.75
SYNE1-230ENST00000495090 POLR3CQ9BUI4 534 aaPredicted RBP10.35□□□□□ -0.75
SYNE1-230ENST00000495090 NINJ2Q9NZG7 142 aa10.35□□□□□ -0.75
SYNE1-230ENST00000495090 SENP1Q9P0U3 644 aa10.35□□□□□ -0.75
SYNE1-230ENST00000495090 WDR35Q9P2L0 1181 aa10.35□□□□□ -0.75
SYNE1-230ENST00000495090 SEL1LQ9UBV2 794 aa10.35□□□□□ -0.75
SYNE1-230ENST00000495090 PTPN22Q9Y2R2 807 aa10.35□□□□□ -0.75
SYNE1-230ENST00000495090 SBF2Q86WG5 1849 aa10.34□□□□□ -0.75
SYNE1-230ENST00000495090 TCRBV7S2A1N4TA0A589 114 aa10.34□□□□□ -0.75
SYNE1-230ENST00000495090 CLIC2O15247 247 aa10.34□□□□□ -0.75
SYNE1-230ENST00000495090 P4HA2O15460 535 aa10.34□□□□□ -0.75
SYNE1-230ENST00000495090 AP1G2O75843 785 aa10.34□□□□□ -0.75
SYNE1-230ENST00000495090 CYP1A2P05177 515 aa10.34□□□□□ -0.75
SYNE1-230ENST00000495090 T-ENOLP0DO92 83 aa10.34□□□□□ -0.75
SYNE1-230ENST00000495090 PTPN4P29074 926 aa10.34□□□□□ -0.75
SYNE1-230ENST00000495090 CHKAP35790 457 aa10.34□□□□□ -0.75
SYNE1-230ENST00000495090 VHLP40337 213 aa10.34□□□□□ -0.75
SYNE1-230ENST00000495090 STAT3P40763 770 aa10.34□□□□□ -0.75
SYNE1-230ENST00000495090 BTDP43251 543 aa10.34□□□□□ -0.75
SYNE1-230ENST00000495090 PSMC6P62333 389 aa10.34□□□□□ -0.75
SYNE1-230ENST00000495090 CBWD6Q4V339 395 aa10.34□□□□□ -0.75
SYNE1-230ENST00000495090 SLC45A4Q5BKX6 768 aa10.34□□□□□ -0.75
SYNE1-230ENST00000495090 CBWD3Q5JTY5 395 aa10.34□□□□□ -0.75
SYNE1-230ENST00000495090 CBWD5Q5RIA9 395 aa10.34□□□□□ -0.75
SYNE1-230ENST00000495090 C15orf52Q6ZUT6 534 aaKnown RBP10.34□□□□□ -0.75
SYNE1-230ENST00000495090 STXBP4Q6ZWJ1 553 aa10.34□□□□□ -0.75
SYNE1-230ENST00000495090 TXNRD3Q86VQ6 643 aa10.34□□□□□ -0.75
SYNE1-230ENST00000495090 SESTD1Q86VW0 696 aa10.34□□□□□ -0.75
SYNE1-230ENST00000495090 TDRPQ86YL5 185 aa10.34□□□□□ -0.75
SYNE1-230ENST00000495090 SLC9A9Q8IVB4 645 aa10.34□□□□□ -0.75
SYNE1-230ENST00000495090 LARGE2Q8N3Y3 721 aa10.34□□□□□ -0.75
SYNE1-230ENST00000495090 LMO3Q8TAP4 145 aa10.34□□□□□ -0.75
SYNE1-230ENST00000495090 ZNF333Q96JL9 665 aa10.34□□□□□ -0.75
SYNE1-230ENST00000495090 FAM20AQ96MK3 541 aa10.34□□□□□ -0.75
SYNE1-230ENST00000495090 SYT15Q9BQS2 421 aa10.34□□□□□ -0.75
SYNE1-230ENST00000495090 ANO3Q9BYT9 981 aa10.34□□□□□ -0.75
SYNE1-230ENST00000495090 NYXQ9GZU5 481 aa10.34□□□□□ -0.75
SYNE1-230ENST00000495090 KIAA1683Q9H0B3 1180 aa10.34□□□□□ -0.75
SYNE1-230ENST00000495090 MLXIPLQ9NP71 852 aa10.34□□□□□ -0.75
SYNE1-230ENST00000495090 SEPT11Q9NVA2 429 aaKnown RBP10.34□□□□□ -0.75
SYNE1-230ENST00000495090 UVRAGQ9P2Y5 699 aa10.34□□□□□ -0.75
SYNE1-230ENST00000495090 PHTF1Q9UMS5 762 aa10.34□□□□□ -0.75
SYNE1-230ENST00000495090 NAALADL1Q9UQQ1 740 aa10.34□□□□□ -0.75
SYNE1-230ENST00000495090 FRMD4BQ9Y2L6 1034 aa10.34□□□□□ -0.75
SYNE1-230ENST00000495090 ZNF831Q5JPB2 1677 aa10.34□□□□□ -0.75
SYNE1-230ENST00000495090 SPDYE5A6NIY4 337 aa10.33□□□□□ -0.76
SYNE1-230ENST00000495090 SIGLEC16A6NMB1 481 aa10.33□□□□□ -0.76
SYNE1-230ENST00000495090 FOXN3O00409 490 aaPredicted RBP10.33□□□□□ -0.76
SYNE1-230ENST00000495090 NVLO15381 856 aaKnown RBP10.33□□□□□ -0.76
SYNE1-230ENST00000495090 EDF1O60869 148 aaKnown RBP10.33□□□□□ -0.76
SYNE1-230ENST00000495090 GAS8O95995 478 aa10.33□□□□□ -0.76
SYNE1-230ENST00000495090 TARSP26639 723 aaKnown RBP10.33□□□□□ -0.76
SYNE1-230ENST00000495090 MARK3P27448 753 aa10.33□□□□□ -0.76
SYNE1-230ENST00000495090 WDR4P57081 412 aaKnown RBP10.33□□□□□ -0.76
SYNE1-230ENST00000495090 RNASELQ05823 741 aaKnown RBP10.33□□□□□ -0.76
SYNE1-230ENST00000495090 ITPK1Q13572 414 aa10.33□□□□□ -0.76
SYNE1-230ENST00000495090 SPARCL1Q14515 664 aa10.33□□□□□ -0.76
SYNE1-230ENST00000495090 MESDQ14696 234 aa10.33□□□□□ -0.76
SYNE1-230ENST00000495090 ZRSR2Q15696 482 aaKnown RBP10.33□□□□□ -0.76
SYNE1-230ENST00000495090 PDK4Q16654 411 aa10.33□□□□□ -0.76
SYNE1-230ENST00000495090 GNPTABQ3T906 1256 aa10.33□□□□□ -0.76
SYNE1-230ENST00000495090 SGO2Q562F6 1265 aa10.33□□□□□ -0.76
SYNE1-230ENST00000495090 TMEM63BQ5T3F8 832 aa10.33□□□□□ -0.76
SYNE1-230ENST00000495090 TBC1D9BQ66K14 1250 aa10.33□□□□□ -0.76
SYNE1-230ENST00000495090 OR52E8Q6IFG1 317 aa10.33□□□□□ -0.76
SYNE1-230ENST00000495090 TMEM154Q6P9G4 183 aa10.33□□□□□ -0.76
SYNE1-230ENST00000495090 HS2ST1Q7LGA3 356 aa10.33□□□□□ -0.76
SYNE1-230ENST00000495090 ZNF804AQ7Z570 1209 aa10.33□□□□□ -0.76
SYNE1-230ENST00000495090 LONP2Q86WA8 852 aa10.33□□□□□ -0.76
SYNE1-230ENST00000495090 SRRM1Q8IYB3 904 aaKnown RBP10.33□□□□□ -0.76
SYNE1-230ENST00000495090 CYP4X1Q8N118 509 aa10.33□□□□□ -0.76
SYNE1-230ENST00000495090 DENND1AQ8TEH3 1009 aa10.33□□□□□ -0.76
SYNE1-230ENST00000495090 TMEM174Q8WUU8 243 aa10.33□□□□□ -0.76
SYNE1-230ENST00000495090 C10orf82Q8WW14 230 aa10.33□□□□□ -0.76
SYNE1-230ENST00000495090 PSPC1Q8WXF1 523 aaKnown RBP10.33□□□□□ -0.76
SYNE1-230ENST00000495090 MAML1Q92585 1016 aa10.33□□□□□ -0.76
SYNE1-230ENST00000495090 FAM163AQ96GL9 167 aaPredicted RBP10.33□□□□□ -0.76
SYNE1-230ENST00000495090 NLRP3Q96P20 1036 aa10.33□□□□□ -0.76
SYNE1-230ENST00000495090 TUBB6Q9BUF5 446 aa10.33□□□□□ -0.76
SYNE1-230ENST00000495090 RUSC1Q9BVN2 902 aa10.33□□□□□ -0.76
SYNE1-230ENST00000495090 FAM192AQ9GZU8 254 aa10.33□□□□□ -0.76
SYNE1-230ENST00000495090 TMX4Q9H1E5 349 aaPredicted RBP10.33□□□□□ -0.76
SYNE1-230ENST00000495090 PPCSQ9HAB8 311 aa10.33□□□□□ -0.76
SYNE1-230ENST00000495090 ASIC3Q9UHC3 531 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms