RNA–Protein interactions for RNA: ENST00000492280.5

HMGN1-220, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 5

Gene HMGN1, Length 2,707 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-220ENST00000492280 CYP26B1Q9NR63 512 aa13.39□□□□□ -0.27
HMGN1-220ENST00000492280 CWC15Q9P013 229 aaKnown RBP13.39□□□□□ -0.27
HMGN1-220ENST00000492280 SPDYE16A6NNV3 312 aaPredicted RBP13.38□□□□□ -0.27
HMGN1-220ENST00000492280 CES2O00748 559 aa13.38□□□□□ -0.27
HMGN1-220ENST00000492280 EIF3HO15372 352 aaKnown RBP eCLIP13.38□□□□□ -0.27
HMGN1-220ENST00000492280 SHOX2O60902 331 aaPredicted RBP13.38□□□□□ -0.27
HMGN1-220ENST00000492280 DSG3P32926 999 aa13.38□□□□□ -0.27
HMGN1-220ENST00000492280 PDE6CP51160 858 aa13.38□□□□□ -0.27
HMGN1-220ENST00000492280 GHRHRQ02643 423 aa13.38□□□□□ -0.27
HMGN1-220ENST00000492280 BIRC3Q13489 604 aa13.38□□□□□ -0.27
HMGN1-220ENST00000492280 TMC3Q7Z5M5 1100 aa13.38□□□□□ -0.27
HMGN1-220ENST00000492280 NLGN2Q8NFZ4 835 aa13.38□□□□□ -0.27
HMGN1-220ENST00000492280 FBXO25Q8TCJ0 367 aa13.38□□□□□ -0.27
HMGN1-220ENST00000492280 ASAP3Q8TDY4 903 aa13.38□□□□□ -0.27
HMGN1-220ENST00000492280 NSUN6Q8TEA1 469 aaKnown RBP13.38□□□□□ -0.27
HMGN1-220ENST00000492280 NT5C1BQ96P26 610 aa13.38□□□□□ -0.27
HMGN1-220ENST00000492280 ZSWIM1Q9BR11 485 aa13.38□□□□□ -0.27
HMGN1-220ENST00000492280 VPS33BQ9H267 617 aa13.38□□□□□ -0.27
HMGN1-220ENST00000492280 DNAJC17Q9NVM6 304 aaKnown RBP13.38□□□□□ -0.27
HMGN1-220ENST00000492280 UTP11Q9Y3A2 253 aaKnown RBP13.38□□□□□ -0.27
HMGN1-220ENST00000492280 PPFIA4O75335 1185 aa13.38□□□□□ -0.27
HMGN1-220ENST00000492280 SHBGP04278 402 aa13.38□□□□□ -0.27
HMGN1-220ENST00000492280 TNNI1P19237 187 aa13.38□□□□□ -0.27
HMGN1-220ENST00000492280 SFNP31947 248 aa13.38□□□□□ -0.27
HMGN1-220ENST00000492280 POLGP54098 1239 aaPredicted RBP13.38□□□□□ -0.27
HMGN1-220ENST00000492280 SNX1Q13596 522 aa13.38□□□□□ -0.27
HMGN1-220ENST00000492280 R3HDM1Q15032 1099 aaKnown RBP13.38□□□□□ -0.27
HMGN1-220ENST00000492280 JAMLQ86YT9 394 aa13.38□□□□□ -0.27
HMGN1-220ENST00000492280 C12orf56Q8IXR9 622 aa13.38□□□□□ -0.27
HMGN1-220ENST00000492280 PRELID2Q8N945 189 aa13.38□□□□□ -0.27
HMGN1-220ENST00000492280 ATG4AQ8WYN0 398 aa13.38□□□□□ -0.27
HMGN1-220ENST00000492280 HERPUD2Q9BSE4 406 aa13.38□□□□□ -0.27
HMGN1-220ENST00000492280 CARD9Q9H257 536 aa13.38□□□□□ -0.27
HMGN1-220ENST00000492280 TMEM8AQ9HCN3 771 aa13.38□□□□□ -0.27
HMGN1-220ENST00000492280 H0YGN5 161 aa13.37□□□□□ -0.27
HMGN1-220ENST00000492280 CCDC188H7C350 402 aa13.37□□□□□ -0.27
HMGN1-220ENST00000492280 CLDN3O15551 220 aa13.37□□□□□ -0.27
HMGN1-220ENST00000492280 RTN2O75298 545 aa13.37□□□□□ -0.27
HMGN1-220ENST00000492280 MARK3P27448 753 aa13.37□□□□□ -0.27
HMGN1-220ENST00000492280 PTENP60484 403 aa13.37□□□□□ -0.27
HMGN1-220ENST00000492280 ALCAMQ13740 583 aa13.37□□□□□ -0.27
HMGN1-220ENST00000492280 EMC2Q15006 297 aa13.37□□□□□ -0.27
HMGN1-220ENST00000492280 TRIP13Q15645 432 aaPredicted RBP13.37□□□□□ -0.27
HMGN1-220ENST00000492280 CDR2LQ86X02 465 aaPredicted RBP13.37□□□□□ -0.27
HMGN1-220ENST00000492280 TRIM50Q86XT4 487 aa13.37□□□□□ -0.27
HMGN1-220ENST00000492280 MREGQ8N565 214 aa13.37□□□□□ -0.27
HMGN1-220ENST00000492280 ATP6V1G3Q96LB4 118 aa13.37□□□□□ -0.27
HMGN1-220ENST00000492280 ANKEF1Q9NU02 776 aa13.37□□□□□ -0.27
HMGN1-220ENST00000492280 CNOT8Q9UFF9 292 aaKnown RBP13.37□□□□□ -0.27
HMGN1-220ENST00000492280 NFS1Q9Y697 457 aa13.37□□□□□ -0.27
HMGN1-220ENST00000492280 IVLP07476 585 aa13.37□□□□□ -0.27
HMGN1-220ENST00000492280 LIG4P49917 911 aa13.37□□□□□ -0.27
HMGN1-220ENST00000492280 HIRAP54198 1017 aaPredicted RBP13.37□□□□□ -0.27
HMGN1-220ENST00000492280 MFAP3P55082 362 aa13.37□□□□□ -0.27
HMGN1-220ENST00000492280 CUL1Q13616 776 aa13.37□□□□□ -0.27
HMGN1-220ENST00000492280 RHOT2Q8IXI1 618 aa13.37□□□□□ -0.27
HMGN1-220ENST00000492280 GPD1LQ8N335 351 aa13.37□□□□□ -0.27
HMGN1-220ENST00000492280 CCDC26Q8TAB7 109 aa13.37□□□□□ -0.27
HMGN1-220ENST00000492280 C1orf54Q8WWF1 131 aa13.37□□□□□ -0.27
HMGN1-220ENST00000492280 ATP6V0A1Q93050 837 aa13.37□□□□□ -0.27
HMGN1-220ENST00000492280 MAGOHBQ96A72 148 aaKnown RBP13.37□□□□□ -0.27
HMGN1-220ENST00000492280 TARS2Q9BW92 718 aaKnown RBP13.37□□□□□ -0.27
HMGN1-220ENST00000492280 TEX13BQ9BXU2 312 aa13.37□□□□□ -0.27
HMGN1-220ENST00000492280 ACAD9Q9H845 621 aa13.37□□□□□ -0.27
HMGN1-220ENST00000492280 ATP6V0A4Q9HBG4 840 aa13.37□□□□□ -0.27
HMGN1-220ENST00000492280 KLHL11Q9NVR0 708 aa13.37□□□□□ -0.27
HMGN1-220ENST00000492280 EXOC7Q9UPT5 735 aa13.37□□□□□ -0.27
HMGN1-220ENST00000492280 SSC5DA1L4H1 1573 aa13.37□□□□□ -0.27
HMGN1-220ENST00000492280 MCM3APO60318 1980 aa13.37□□□□□ -0.27
HMGN1-220ENST00000492280 FGFR4P22455 802 aa13.36□□□□□ -0.27
HMGN1-220ENST00000492280 VPS41P49754 854 aa13.36□□□□□ -0.27
HMGN1-220ENST00000492280 MYBPC2Q14324 1141 aa13.36□□□□□ -0.27
HMGN1-220ENST00000492280 TDRD10Q5VZ19 366 aaKnown RBP13.36□□□□□ -0.27
HMGN1-220ENST00000492280 ANKRD35Q8N283 1001 aa13.36□□□□□ -0.27
HMGN1-220ENST00000492280 DDX1Q92499 740 aaKnown RBP13.36□□□□□ -0.27
HMGN1-220ENST00000492280 GPRASP2Q96D09 838 aa13.36□□□□□ -0.27
HMGN1-220ENST00000492280 FMO2Q99518 471 aa13.36□□□□□ -0.27
HMGN1-220ENST00000492280 PAGR1Q9BTK6 254 aa13.36□□□□□ -0.27
HMGN1-220ENST00000492280 SLITRK6Q9H5Y7 841 aa13.36□□□□□ -0.27
HMGN1-220ENST00000492280 PPANQ9NQ55 473 aaKnown RBP13.36□□□□□ -0.27
HMGN1-220ENST00000492280 ANAPC7Q9UJX3 599 aa13.36□□□□□ -0.27
HMGN1-220ENST00000492280 DAAM1Q9Y4D1 1078 aa13.36□□□□□ -0.27
HMGN1-220ENST00000492280 PSAPP07602 524 aa13.36□□□□□ -0.27
HMGN1-220ENST00000492280 RRM1P23921 792 aa13.36□□□□□ -0.27
HMGN1-220ENST00000492280 RPL21P46778 160 aaKnown RBP13.36□□□□□ -0.27
HMGN1-220ENST00000492280 KRT71Q3SY84 523 aa13.36□□□□□ -0.27
HMGN1-220ENST00000492280 ABHD15Q6UXT9 468 aa13.36□□□□□ -0.27
HMGN1-220ENST00000492280 OTUD6AQ7L8S5 288 aa13.36□□□□□ -0.27
HMGN1-220ENST00000492280 CCDC25Q86WR0 208 aa13.36□□□□□ -0.27
HMGN1-220ENST00000492280 FAM212AQ96EL1 285 aa13.36□□□□□ -0.27
HMGN1-220ENST00000492280 ST6GALNAC4Q9H4F1 302 aa13.36□□□□□ -0.27
HMGN1-220ENST00000492280 FEZ2Q9UHY8 353 aaPredicted RBP13.36□□□□□ -0.27
HMGN1-220ENST00000492280 NOVA2Q9UNW9 492 aaKnown RBP13.36□□□□□ -0.27
HMGN1-220ENST00000492280 TLDC2A0PJX2 215 aa13.35□□□□□ -0.27
HMGN1-220ENST00000492280 RPS6KA5O75582 802 aa13.35□□□□□ -0.27
HMGN1-220ENST00000492280 SLCO1A2P46721 670 aa13.35□□□□□ -0.27
HMGN1-220ENST00000492280 PEX5P50542 639 aa13.35□□□□□ -0.27
HMGN1-220ENST00000492280 TMEM63BQ5T3F8 832 aa13.35□□□□□ -0.27
HMGN1-220ENST00000492280 DCAF15Q66K64 600 aa13.35□□□□□ -0.27
HMGN1-220ENST00000492280 CCDC137Q6PK04 289 aaKnown RBP13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms