RNA–Protein interactions for RNA: ENST00000489611.5

COL9A1-208, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 2

Gene COL9A1, Length 1,940 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-208ENST00000489611 PIGRP01833 764 aa16.09■□□□□ 0.17
COL9A1-208ENST00000489611 RFC5P40937 340 aa16.09■□□□□ 0.17
COL9A1-208ENST00000489611 PTENP60484 403 aa16.09■□□□□ 0.17
COL9A1-208ENST00000489611 CDR2Q01850 454 aa16.09■□□□□ 0.17
COL9A1-208ENST00000489611 PRPF4BQ13523 1007 aaKnown RBP16.09■□□□□ 0.17
COL9A1-208ENST00000489611 ERO1BQ86YB8 467 aa16.09■□□□□ 0.17
COL9A1-208ENST00000489611 HELQQ8TDG4 1101 aa16.09■□□□□ 0.17
COL9A1-208ENST00000489611 RNPC3Q96LT9 517 aaKnown RBP16.09■□□□□ 0.17
COL9A1-208ENST00000489611 PLVAPQ9BX97 442 aa16.09■□□□□ 0.17
COL9A1-208ENST00000489611 GOLPH3Q9H4A6 298 aa16.09■□□□□ 0.17
COL9A1-208ENST00000489611 GTF3C4Q9UKN8 822 aa16.09■□□□□ 0.17
COL9A1-208ENST00000489611 PAPPA2Q9BXP8 1791 aa16.09■□□□□ 0.17
COL9A1-208ENST00000489611 OTOFQ9HC10 1997 aa16.09■□□□□ 0.17
COL9A1-208ENST00000489611 FAM187AA6NFU0 413 aa16.09■□□□□ 0.17
COL9A1-208ENST00000489611 FGGP02679 453 aa16.09■□□□□ 0.17
COL9A1-208ENST00000489611 NAMPTP43490 491 aa16.09■□□□□ 0.17
COL9A1-208ENST00000489611 POLGP54098 1239 aaPredicted RBP16.09■□□□□ 0.17
COL9A1-208ENST00000489611 RNASE9P60153 205 aaKnown RBP16.09■□□□□ 0.17
COL9A1-208ENST00000489611 TREML2Q5T2D2 321 aa16.09■□□□□ 0.17
COL9A1-208ENST00000489611 CCDC60Q8IWA6 550 aaPredicted RBP16.09■□□□□ 0.17
COL9A1-208ENST00000489611 SLC20A1Q8WUM9 679 aa16.09■□□□□ 0.17
COL9A1-208ENST00000489611 CCDC127Q96BQ5 260 aa16.09■□□□□ 0.17
COL9A1-208ENST00000489611 TRIM11Q96F44 468 aa16.09■□□□□ 0.17
COL9A1-208ENST00000489611 BICD1Q96G01 975 aa16.09■□□□□ 0.17
COL9A1-208ENST00000489611 MPHOSPH6Q99547 160 aaKnown RBP16.09■□□□□ 0.17
COL9A1-208ENST00000489611 SH2D3AQ9BRG2 576 aa16.09■□□□□ 0.17
COL9A1-208ENST00000489611 XPNPEP1Q9NQW7 623 aa16.09■□□□□ 0.17
COL9A1-208ENST00000489611 ALG6Q9Y672 507 aa16.09■□□□□ 0.17
COL9A1-208ENST00000489611 A0A0G2JMZ2 1700 aa16.09■□□□□ 0.17
COL9A1-208ENST00000489611 GOLGA8IPA6NC78 632 aa16.08■□□□□ 0.16
COL9A1-208ENST00000489611 SPDYE5A6NIY4 337 aa16.08■□□□□ 0.16
COL9A1-208ENST00000489611 GOLGA8JA6NMD2 632 aa16.08■□□□□ 0.16
COL9A1-208ENST00000489611 ERLIN2O94905 339 aa16.08■□□□□ 0.16
COL9A1-208ENST00000489611 CYP1A2P05177 515 aa16.08■□□□□ 0.16
COL9A1-208ENST00000489611 TGFB3P10600 412 aa16.08■□□□□ 0.16
COL9A1-208ENST00000489611 CYP11B1P15538 503 aa16.08■□□□□ 0.16
COL9A1-208ENST00000489611 USP8P40818 1118 aa16.08■□□□□ 0.16
COL9A1-208ENST00000489611 LIG4P49917 911 aa16.08■□□□□ 0.16
COL9A1-208ENST00000489611 HLTFQ14527 1009 aaKnown RBP eCLIP16.08■□□□□ 0.16
COL9A1-208ENST00000489611 PSMD6Q15008 389 aa16.08■□□□□ 0.16
COL9A1-208ENST00000489611 SV2AQ7L0J3 742 aa16.08■□□□□ 0.16
COL9A1-208ENST00000489611 EXOC8Q8IYI6 725 aa16.08■□□□□ 0.16
COL9A1-208ENST00000489611 SLC7A3Q8WY07 619 aa16.08■□□□□ 0.16
COL9A1-208ENST00000489611 BSNDQ8WZ55 320 aa16.08■□□□□ 0.16
COL9A1-208ENST00000489611 ARHGEF26Q96DR7 871 aa16.08■□□□□ 0.16
COL9A1-208ENST00000489611 SAAL1Q96ER3 474 aa16.08■□□□□ 0.16
COL9A1-208ENST00000489611 KREMEN1Q96MU8 473 aa16.08■□□□□ 0.16
COL9A1-208ENST00000489611 NIFKQ9BYG3 293 aaKnown RBP16.08■□□□□ 0.16
COL9A1-208ENST00000489611 POLR3FQ9H1D9 316 aaPredicted RBP16.08■□□□□ 0.16
COL9A1-208ENST00000489611 ZNF302Q9NR11 478 aa16.08■□□□□ 0.16
COL9A1-208ENST00000489611 C1orf112Q9NSG2 853 aa16.08■□□□□ 0.16
COL9A1-208ENST00000489611 TAS2R14Q9NYV8 317 aa16.08■□□□□ 0.16
COL9A1-208ENST00000489611 SIP14410 1827 aa16.08■□□□□ 0.16
COL9A1-208ENST00000489611 OATP04181 439 aa16.07■□□□□ 0.16
COL9A1-208ENST00000489611 DRG2P55039 364 aaKnown RBP16.07■□□□□ 0.16
COL9A1-208ENST00000489611 ERVK-9P63128 1117 aa16.07■□□□□ 0.16
COL9A1-208ENST00000489611 EMC2Q15006 297 aa16.07■□□□□ 0.16
COL9A1-208ENST00000489611 WDR44Q5JSH3 913 aa16.07■□□□□ 0.16
COL9A1-208ENST00000489611 EMC10Q5UCC4 262 aa16.07■□□□□ 0.16
COL9A1-208ENST00000489611 SLC39A4Q6P5W5 647 aa16.07■□□□□ 0.16
COL9A1-208ENST00000489611 C15orf39Q6ZRI6 1047 aa16.07■□□□□ 0.16
COL9A1-208ENST00000489611 NOP9Q86U38 636 aaKnown RBP16.07■□□□□ 0.16
COL9A1-208ENST00000489611 TSEN2Q8NCE0 465 aaKnown RBP16.07■□□□□ 0.16
COL9A1-208ENST00000489611 OPTNQ96CV9 577 aa16.07■□□□□ 0.16
COL9A1-208ENST00000489611 ZIM3Q96PE6 472 aa16.07■□□□□ 0.16
COL9A1-208ENST00000489611 AP1M1Q9BXS5 423 aa16.07■□□□□ 0.16
COL9A1-208ENST00000489611 PORCNQ9H237 461 aa16.07■□□□□ 0.16
COL9A1-208ENST00000489611 DHX33Q9H6R0 707 aaKnown RBP16.07■□□□□ 0.16
COL9A1-208ENST00000489611 RASAL2Q9UJF2 1139 aa16.07■□□□□ 0.16
COL9A1-208ENST00000489611 COG5Q9UP83 839 aa16.07■□□□□ 0.16
COL9A1-208ENST00000489611 LCTP09848 1927 aa16.07■□□□□ 0.16
COL9A1-208ENST00000489611 IGKV6D-21A0A0A0MT36 114 aa16.07■□□□□ 0.16
COL9A1-208ENST00000489611 GOLGA6L10A6NI86 522 aa16.07■□□□□ 0.16
COL9A1-208ENST00000489611 SGPL1O95470 568 aa16.07■□□□□ 0.16
COL9A1-208ENST00000489611 MYBL1P10243 752 aa16.07■□□□□ 0.16
COL9A1-208ENST00000489611 HNRNPH2P55795 449 aaKnown RBP16.07■□□□□ 0.16
COL9A1-208ENST00000489611 NEDD9Q14511 834 aa16.07■□□□□ 0.16
COL9A1-208ENST00000489611 LDLRAD1Q5T700 205 aa16.07■□□□□ 0.16
COL9A1-208ENST00000489611 LBX2Q6XYB7 198 aa16.07■□□□□ 0.16
COL9A1-208ENST00000489611 GADL1Q6ZQY3 521 aa16.07■□□□□ 0.16
COL9A1-208ENST00000489611 PALB2Q86YC2 1186 aa16.07■□□□□ 0.16
COL9A1-208ENST00000489611 RIOX2Q8IUF8 465 aa16.07■□□□□ 0.16
COL9A1-208ENST00000489611 ANKRD35Q8N283 1001 aa16.07■□□□□ 0.16
COL9A1-208ENST00000489611 SEMA4DQ92854 862 aa16.07■□□□□ 0.16
COL9A1-208ENST00000489611 FNBP1Q96RU3 617 aa16.07■□□□□ 0.16
COL9A1-208ENST00000489611 ZSWIM1Q9BR11 485 aa16.07■□□□□ 0.16
COL9A1-208ENST00000489611 FAM129AQ9BZQ8 928 aa16.07■□□□□ 0.16
COL9A1-208ENST00000489611 DDX47Q9H0S4 455 aaKnown RBP16.07■□□□□ 0.16
COL9A1-208ENST00000489611 NRBP2Q9NSY0 501 aa16.07■□□□□ 0.16
COL9A1-208ENST00000489611 ESYT3A0FGR9 886 aa16.06■□□□□ 0.16
COL9A1-208ENST00000489611 DCAF8L1A6NGE4 600 aa16.06■□□□□ 0.16
COL9A1-208ENST00000489611 CYP26A1O43174 497 aa16.06■□□□□ 0.16
COL9A1-208ENST00000489611 CHRNB2P17787 502 aa16.06■□□□□ 0.16
COL9A1-208ENST00000489611 CHRNA3P32297 505 aa16.06■□□□□ 0.16
COL9A1-208ENST00000489611 COPB2P35606 906 aa16.06■□□□□ 0.16
COL9A1-208ENST00000489611 MRPS25P82663 173 aaKnown RBP16.06■□□□□ 0.16
COL9A1-208ENST00000489611 FMO1Q01740 532 aa16.06■□□□□ 0.16
COL9A1-208ENST00000489611 POU5F1Q01860 360 aaKnown RBP16.06■□□□□ 0.16
COL9A1-208ENST00000489611 SEL1L2Q5TEA6 688 aa16.06■□□□□ 0.16
COL9A1-208ENST00000489611 FAM160B1Q5W0V3 765 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms