RNA–Protein interactions for RNA: ENST00000489318.1

C9orf3-220, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 682 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-220ENST00000489318 RFX1P22670 979 aa12.47□□□□□ -0.41
C9orf3-220ENST00000489318 HOXA11P31270 313 aaPredicted RBP12.47□□□□□ -0.41
C9orf3-220ENST00000489318 ACOT2P49753 483 aa12.47□□□□□ -0.41
C9orf3-220ENST00000489318 MXI1P50539 228 aa12.47□□□□□ -0.41
C9orf3-220ENST00000489318 ADKP55263 362 aaKnown RBP12.47□□□□□ -0.41
C9orf3-220ENST00000489318 WNT7BP56706 349 aa12.47□□□□□ -0.41
C9orf3-220ENST00000489318 TMEM62Q0P6H9 643 aa12.47□□□□□ -0.41
C9orf3-220ENST00000489318 SURF1Q15526 300 aa12.47□□□□□ -0.41
C9orf3-220ENST00000489318 MEA1Q16626 185 aa12.47□□□□□ -0.41
C9orf3-220ENST00000489318 TRIM71Q2Q1W2 868 aaKnown RBP12.47□□□□□ -0.41
C9orf3-220ENST00000489318 DCAF4L1Q3SXM0 396 aa12.47□□□□□ -0.41
C9orf3-220ENST00000489318 FAM47CQ5HY64 1035 aa12.47□□□□□ -0.41
C9orf3-220ENST00000489318 KRT39Q6A163 491 aa12.47□□□□□ -0.41
C9orf3-220ENST00000489318 CTU1Q7Z7A3 348 aaKnown RBP12.47□□□□□ -0.41
C9orf3-220ENST00000489318 RSPH3Q86UC2 560 aa12.47□□□□□ -0.41
C9orf3-220ENST00000489318 NEK11Q8NG66 645 aa12.47□□□□□ -0.41
C9orf3-220ENST00000489318 CGRRF1Q99675 332 aa12.47□□□□□ -0.41
C9orf3-220ENST00000489318 LSM14BQ9BX40 385 aaKnown RBP12.47□□□□□ -0.41
C9orf3-220ENST00000489318 CELF4Q9BZC1 486 aaKnown RBP12.47□□□□□ -0.41
C9orf3-220ENST00000489318 SENP6Q9GZR1 1112 aaPredicted RBP12.47□□□□□ -0.41
C9orf3-220ENST00000489318 TMEM117Q9H0C3 514 aa12.47□□□□□ -0.41
C9orf3-220ENST00000489318 FAM207AQ9NSI2 230 aaPredicted RBP12.47□□□□□ -0.41
C9orf3-220ENST00000489318 LUC7L2Q9Y383 392 aaKnown RBP12.47□□□□□ -0.41
C9orf3-220ENST00000489318 KBTBD13C9JR72 458 aa12.46□□□□□ -0.41
C9orf3-220ENST00000489318 NRDCO43847 1150 aa12.46□□□□□ -0.41
C9orf3-220ENST00000489318 CSDE1O75534 798 aaKnown RBP12.46□□□□□ -0.41
C9orf3-220ENST00000489318 CCL5P13501 91 aa12.46□□□□□ -0.41
C9orf3-220ENST00000489318 SLC9A1P19634 815 aa12.46□□□□□ -0.41
C9orf3-220ENST00000489318 KRT9P35527 623 aa12.46□□□□□ -0.41
C9orf3-220ENST00000489318 TNFSF9P41273 254 aa12.46□□□□□ -0.41
C9orf3-220ENST00000489318 MATR3P43243 847 aaKnown RBP eCLIP12.46□□□□□ -0.41
C9orf3-220ENST00000489318 AP3M2P53677 418 aa12.46□□□□□ -0.41
C9orf3-220ENST00000489318 CDK17Q00537 523 aa12.46□□□□□ -0.41
C9orf3-220ENST00000489318 GOLGA8FQ08AF8 430 aa12.46□□□□□ -0.41
C9orf3-220ENST00000489318 GOLGA8DPQ0D2H9 430 aa12.46□□□□□ -0.41
C9orf3-220ENST00000489318 MTFR1Q15390 333 aa12.46□□□□□ -0.41
C9orf3-220ENST00000489318 PTGISQ16647 500 aa12.46□□□□□ -0.41
C9orf3-220ENST00000489318 FAM26DQ5JW98 314 aa12.46□□□□□ -0.41
C9orf3-220ENST00000489318 KLHDC7AQ5VTJ3 777 aa12.46□□□□□ -0.41
C9orf3-220ENST00000489318 NOTUMQ6P988 496 aa12.46□□□□□ -0.41
C9orf3-220ENST00000489318 SLC27A1Q6PCB7 646 aa12.46□□□□□ -0.41
C9orf3-220ENST00000489318 FBXO46Q6PJ61 603 aaPredicted RBP12.46□□□□□ -0.41
C9orf3-220ENST00000489318 WDR49Q8IV35 697 aa12.46□□□□□ -0.41
C9orf3-220ENST00000489318 DHX38Q92620 1227 aaKnown RBP12.46□□□□□ -0.41
C9orf3-220ENST00000489318 ARMC5Q96C12 935 aa12.46□□□□□ -0.41
C9orf3-220ENST00000489318 ZNF333Q96JL9 665 aa12.46□□□□□ -0.41
C9orf3-220ENST00000489318 PCMTD1Q96MG8 357 aaPredicted RBP12.46□□□□□ -0.41
C9orf3-220ENST00000489318 ZNF830Q96NB3 372 aaPredicted RBP12.46□□□□□ -0.41
C9orf3-220ENST00000489318 CRACR2AQ9BSW2 395 aa12.46□□□□□ -0.41
C9orf3-220ENST00000489318 TCHPQ9BT92 498 aa12.46□□□□□ -0.41
C9orf3-220ENST00000489318 CRISPLD2Q9H0B8 497 aa12.46□□□□□ -0.41
C9orf3-220ENST00000489318 MMRN2Q9H8L6 949 aa12.46□□□□□ -0.41
C9orf3-220ENST00000489318 STARD7Q9NQZ5 370 aa12.46□□□□□ -0.41
C9orf3-220ENST00000489318 MYO6Q9UM54 1294 aa12.46□□□□□ -0.41
C9orf3-220ENST00000489318 PLAGL2Q9UPG8 496 aa12.46□□□□□ -0.41
C9orf3-220ENST00000489318 CDY2AQ9Y6F7 541 aa12.46□□□□□ -0.41
C9orf3-220ENST00000489318 PTPRJQ12913 1337 aa12.45□□□□□ -0.42
C9orf3-220ENST00000489318 M0QZ92 97 aa12.45□□□□□ -0.42
C9orf3-220ENST00000489318 ARHGAP6O43182 974 aa12.45□□□□□ -0.42
C9orf3-220ENST00000489318 B4GALT4O60513 344 aa12.45□□□□□ -0.42
C9orf3-220ENST00000489318 SKILP12757 684 aa12.45□□□□□ -0.42
C9orf3-220ENST00000489318 UCHL3P15374 230 aa12.45□□□□□ -0.42
C9orf3-220ENST00000489318 GRM5P41594 1212 aa12.45□□□□□ -0.42
C9orf3-220ENST00000489318 GCLMP48507 274 aa12.45□□□□□ -0.42
C9orf3-220ENST00000489318 CETN1Q12798 172 aa12.45□□□□□ -0.42
C9orf3-220ENST00000489318 ENOX2Q16206 610 aaKnown RBP12.45□□□□□ -0.42
C9orf3-220ENST00000489318 PKN2Q16513 984 aaKnown RBP12.45□□□□□ -0.42
C9orf3-220ENST00000489318 ZACNQ401N2 412 aa12.45□□□□□ -0.42
C9orf3-220ENST00000489318 PDXDC1Q6P996 788 aa12.45□□□□□ -0.42
C9orf3-220ENST00000489318 CATSPER4Q7RTX7 472 aa12.45□□□□□ -0.42
C9orf3-220ENST00000489318 APBB1IPQ7Z5R6 666 aaPredicted RBP12.45□□□□□ -0.42
C9orf3-220ENST00000489318 ZBTB33Q86T24 672 aa12.45□□□□□ -0.42
C9orf3-220ENST00000489318 FAM228AQ86W67 206 aa12.45□□□□□ -0.42
C9orf3-220ENST00000489318 CEP120Q8N960 986 aa12.45□□□□□ -0.42
C9orf3-220ENST00000489318 OR8K1Q8NGG5 319 aa12.45□□□□□ -0.42
C9orf3-220ENST00000489318 KIAA1524Q8TCG1 905 aa12.45□□□□□ -0.42
C9orf3-220ENST00000489318 SYN2Q92777 582 aaPredicted RBP12.45□□□□□ -0.42
C9orf3-220ENST00000489318 CCDC127Q96BQ5 260 aa12.45□□□□□ -0.42
C9orf3-220ENST00000489318 CPB2Q96IY4 423 aa12.45□□□□□ -0.42
C9orf3-220ENST00000489318 BAG1Q99933 345 aaPredicted RBP12.45□□□□□ -0.42
C9orf3-220ENST00000489318 ADPGKQ9BRR6 497 aa12.45□□□□□ -0.42
C9orf3-220ENST00000489318 INTS2Q9H0H0 1204 aaKnown RBP12.45□□□□□ -0.42
C9orf3-220ENST00000489318 NUCKS1Q9H1E3 243 aaKnown RBP12.45□□□□□ -0.42
C9orf3-220ENST00000489318 TOPORSQ9NS56 1045 aaPredicted RBP12.45□□□□□ -0.42
C9orf3-220ENST00000489318 KCND1Q9NSA2 647 aa12.45□□□□□ -0.42
C9orf3-220ENST00000489318 APEX2Q9UBZ4 518 aa12.45□□□□□ -0.42
C9orf3-220ENST00000489318 PYCARDQ9ULZ3 195 aa12.45□□□□□ -0.42
C9orf3-220ENST00000489318 SQORQ9Y6N5 450 aa12.45□□□□□ -0.42
C9orf3-220ENST00000489318 ESPNB1AK53 854 aa12.44□□□□□ -0.42
C9orf3-220ENST00000489318 ARVCFO00192 962 aa12.44□□□□□ -0.42
C9orf3-220ENST00000489318 MEFVO15553 781 aaPredicted RBP12.44□□□□□ -0.42
C9orf3-220ENST00000489318 ZC3H11AO75152 810 aaKnown RBP eCLIP12.44□□□□□ -0.42
C9orf3-220ENST00000489318 IL18RAPO95256 599 aa12.44□□□□□ -0.42
C9orf3-220ENST00000489318 CHRNA1P02708 482 aa12.44□□□□□ -0.42
C9orf3-220ENST00000489318 C4BPAP04003 597 aaKnown RBP12.44□□□□□ -0.42
C9orf3-220ENST00000489318 MYCNP04198 464 aaPredicted RBP12.44□□□□□ -0.42
C9orf3-220ENST00000489318 CLTAP09496 248 aa12.44□□□□□ -0.42
C9orf3-220ENST00000489318 HARSP12081 509 aaKnown RBP12.44□□□□□ -0.42
C9orf3-220ENST00000489318 FGFR4P22455 802 aa12.44□□□□□ -0.42
C9orf3-220ENST00000489318 CDK7P50613 346 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms