RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 SETSIPP0DME0 302 aa11.73□□□□□ -0.53
HDAC6-228ENST00000486227 VCAM1P19320 739 aa11.73□□□□□ -0.53
HDAC6-228ENST00000486227 GEN1Q17RS7 908 aa11.73□□□□□ -0.53
HDAC6-228ENST00000486227 ENOSF1Q7L5Y1 443 aa11.73□□□□□ -0.53
HDAC6-228ENST00000486227 CHST13Q8NET6 341 aa11.73□□□□□ -0.53
HDAC6-228ENST00000486227 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP11.73□□□□□ -0.53
HDAC6-228ENST00000486227 VCX3BQ9H321 246 aa11.73□□□□□ -0.53
HDAC6-228ENST00000486227 SLITRK6Q9H5Y7 841 aa11.73□□□□□ -0.53
HDAC6-228ENST00000486227 BATF3Q9NR55 127 aa11.73□□□□□ -0.53
HDAC6-228ENST00000486227 TXLNGQ9NUQ3 528 aa11.73□□□□□ -0.53
HDAC6-228ENST00000486227 FAM198AQ9UFP1 575 aa11.73□□□□□ -0.53
HDAC6-228ENST00000486227 PFASO15067 1338 aa11.73□□□□□ -0.53
HDAC6-228ENST00000486227 LRRIQ3A6PVS8 624 aaPredicted RBP11.73□□□□□ -0.53
HDAC6-228ENST00000486227 I3L4J1 428 aa11.73□□□□□ -0.53
HDAC6-228ENST00000486227 PLEKP08567 350 aaPredicted RBP11.73□□□□□ -0.53
HDAC6-228ENST00000486227 LSP1P33241 339 aa11.73□□□□□ -0.53
HDAC6-228ENST00000486227 SARSP49591 514 aaKnown RBP11.73□□□□□ -0.53
HDAC6-228ENST00000486227 IRX1P78414 480 aaPredicted RBP11.73□□□□□ -0.53
HDAC6-228ENST00000486227 GIT2Q14161 759 aa11.73□□□□□ -0.53
HDAC6-228ENST00000486227 CENPPQ6IPU0 288 aa11.73□□□□□ -0.53
HDAC6-228ENST00000486227 SIX6OS1Q8N1H7 587 aa11.73□□□□□ -0.53
HDAC6-228ENST00000486227 KCTD17Q8N5Z5 321 aa11.73□□□□□ -0.53
HDAC6-228ENST00000486227 ANKZF1Q9H8Y5 726 aa11.73□□□□□ -0.53
HDAC6-228ENST00000486227 DLG5Q8TDM6 1919 aa11.73□□□□□ -0.53
HDAC6-228ENST00000486227 MMEP08473 750 aa11.73□□□□□ -0.53
HDAC6-228ENST00000486227 ARL4AP40617 200 aa11.73□□□□□ -0.53
HDAC6-228ENST00000486227 PMS1P54277 932 aaKnown RBP11.73□□□□□ -0.53
HDAC6-228ENST00000486227 FCGRTP55899 365 aa11.73□□□□□ -0.53
HDAC6-228ENST00000486227 PSMC6P62333 389 aa11.73□□□□□ -0.53
HDAC6-228ENST00000486227 ITKQ08881 620 aa11.73□□□□□ -0.53
HDAC6-228ENST00000486227 SH2D4BQ5SQS7 431 aa11.73□□□□□ -0.53
HDAC6-228ENST00000486227 CDKAL1Q5VV42 579 aa11.73□□□□□ -0.53
HDAC6-228ENST00000486227 XRRA1Q6P2D8 792 aa11.73□□□□□ -0.53
HDAC6-228ENST00000486227 THEM5Q8N1Q8 247 aa11.73□□□□□ -0.53
HDAC6-228ENST00000486227 HSPH1Q92598 858 aa11.73□□□□□ -0.53
HDAC6-228ENST00000486227 ATP2A3Q93084 1043 aa11.73□□□□□ -0.53
HDAC6-228ENST00000486227 KATNAL1Q9BW62 490 aa11.73□□□□□ -0.53
HDAC6-228ENST00000486227 TAF1DQ9H5J8 278 aaPredicted RBP11.73□□□□□ -0.53
HDAC6-228ENST00000486227 AGPAT3Q9NRZ7 376 aa11.73□□□□□ -0.53
HDAC6-228ENST00000486227 ANKEF1Q9NU02 776 aa11.73□□□□□ -0.53
HDAC6-228ENST00000486227 LCMT1Q9UIC8 334 aa11.73□□□□□ -0.53
HDAC6-228ENST00000486227 DIS3Q9Y2L1 958 aaKnown RBP11.73□□□□□ -0.53
HDAC6-228ENST00000486227 PPP2R3BQ9Y5P8 575 aa11.73□□□□□ -0.53
HDAC6-228ENST00000486227 GH1P01241 217 aa11.72□□□□□ -0.53
HDAC6-228ENST00000486227 MAP7Q14244 749 aa11.72□□□□□ -0.53
HDAC6-228ENST00000486227 C6orf118Q5T5N4 469 aa11.72□□□□□ -0.53
HDAC6-228ENST00000486227 GJB7Q6PEY0 223 aa11.72□□□□□ -0.53
HDAC6-228ENST00000486227 PACS2Q86VP3 889 aa11.72□□□□□ -0.53
HDAC6-228ENST00000486227 SH2D3CQ8N5H7 860 aa11.72□□□□□ -0.53
HDAC6-228ENST00000486227 RNF139Q8WU17 664 aa11.72□□□□□ -0.53
HDAC6-228ENST00000486227 ELAC2Q9BQ52 826 aaKnown RBP11.72□□□□□ -0.53
HDAC6-228ENST00000486227 LBHD1Q9BQE6 289 aaPredicted RBP11.72□□□□□ -0.53
HDAC6-228ENST00000486227 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.72□□□□□ -0.531e-7■■■□□ 15.1
HDAC6-228ENST00000486227 MKNK1Q9BUB5 465 aa11.72□□□□□ -0.53
HDAC6-228ENST00000486227 VPS33BQ9H267 617 aa11.72□□□□□ -0.53
HDAC6-228ENST00000486227 TBK1Q9UHD2 729 aa11.72□□□□□ -0.53
HDAC6-228ENST00000486227 UBE4BO95155 1302 aa11.72□□□□□ -0.53
HDAC6-228ENST00000486227 MAP2K7O14733 419 aa11.72□□□□□ -0.53
HDAC6-228ENST00000486227 ACTR2P61160 394 aa11.72□□□□□ -0.53
HDAC6-228ENST00000486227 ERVK-24P63145 666 aa11.72□□□□□ -0.53
HDAC6-228ENST00000486227 IL9RQ01113 521 aa11.72□□□□□ -0.53
HDAC6-228ENST00000486227 CRY2Q49AN0 593 aa11.72□□□□□ -0.53
HDAC6-228ENST00000486227 PPP6R3Q5H9R7 873 aaPredicted RBP11.72□□□□□ -0.53
HDAC6-228ENST00000486227 KLHDC7AQ5VTJ3 777 aa11.72□□□□□ -0.53
HDAC6-228ENST00000486227 SLC30A5Q8TAD4 765 aa11.72□□□□□ -0.53
HDAC6-228ENST00000486227 POLIQ9UNA4 740 aa11.72□□□□□ -0.53
HDAC6-228ENST00000486227 DISP2A7MBM2 1401 aa11.72□□□□□ -0.53
HDAC6-228ENST00000486227 LTN1O94822 1766 aa11.72□□□□□ -0.53
HDAC6-228ENST00000486227 A0A1W2PQJ5 194 aa11.72□□□□□ -0.53
HDAC6-228ENST00000486227 GIPC1O14908 333 aa11.72□□□□□ -0.53
HDAC6-228ENST00000486227 CALB1P05937 261 aa11.72□□□□□ -0.53
HDAC6-228ENST00000486227 CASP4P49662 377 aa11.72□□□□□ -0.53
HDAC6-228ENST00000486227 ADCY2Q08462 1091 aa11.72□□□□□ -0.53
HDAC6-228ENST00000486227 PPP2R5CQ13362 524 aa11.72□□□□□ -0.53
HDAC6-228ENST00000486227 WDR72Q3MJ13 1102 aa11.72□□□□□ -0.53
HDAC6-228ENST00000486227 RASIP1Q5U651 963 aa11.72□□□□□ -0.53
HDAC6-228ENST00000486227 LRRC71Q8N4P6 559 aa11.72□□□□□ -0.53
HDAC6-228ENST00000486227 SCFD2Q8WU76 684 aa11.72□□□□□ -0.53
HDAC6-228ENST00000486227 GPRASP2Q96D09 838 aa11.72□□□□□ -0.53
HDAC6-228ENST00000486227 MS4A14Q96JA4 679 aa11.72□□□□□ -0.53
HDAC6-228ENST00000486227 PNMA5Q96PV4 448 aa11.72□□□□□ -0.53
HDAC6-228ENST00000486227 TPX2Q9ULW0 747 aaKnown RBP11.72□□□□□ -0.53
HDAC6-228ENST00000486227 PLAGL2Q9UPG8 496 aa11.72□□□□□ -0.53
HDAC6-228ENST00000486227 ACSL3O95573 720 aa11.72□□□□□ -0.53
HDAC6-228ENST00000486227 RARBP10826 455 aa11.72□□□□□ -0.53
HDAC6-228ENST00000486227 XPAP23025 273 aaPredicted RBP11.72□□□□□ -0.53
HDAC6-228ENST00000486227 SLC12A2P55011 1212 aa11.72□□□□□ -0.53
HDAC6-228ENST00000486227 MAGOHP61326 146 aaKnown RBP11.72□□□□□ -0.53
HDAC6-228ENST00000486227 BBS9Q3SYG4 887 aa11.72□□□□□ -0.53
HDAC6-228ENST00000486227 TSC22D3Q99576 134 aa11.72□□□□□ -0.53
HDAC6-228ENST00000486227 TARS2Q9BW92 718 aaKnown RBP11.72□□□□□ -0.53
HDAC6-228ENST00000486227 FHDC1Q9C0D6 1143 aaPredicted RBP11.72□□□□□ -0.53
HDAC6-228ENST00000486227 SMARCAD1Q9H4L7 1026 aa11.72□□□□□ -0.53
HDAC6-228ENST00000486227 PCSK1NQ9UHG2 260 aa11.72□□□□□ -0.53
HDAC6-228ENST00000486227 NOC2LQ9Y3T9 749 aaKnown RBP11.72□□□□□ -0.53
HDAC6-228ENST00000486227 PODXLO00592 558 aa11.71□□□□□ -0.53
HDAC6-228ENST00000486227 MAP1SQ66K74 1059 aaPredicted RBP11.71□□□□□ -0.53
HDAC6-228ENST00000486227 MMGT1Q8N4V1 131 aa11.71□□□□□ -0.53
HDAC6-228ENST00000486227 BEST2Q8NFU1 509 aa11.71□□□□□ -0.53
HDAC6-228ENST00000486227 SYTL5Q8TDW5 730 aaPredicted RBP11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms