RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 COX16Q9P0S2 106 aa14.37□□□□□ -0.11
USP42-206ENST00000479544 APEX2Q9UBZ4 518 aa14.37□□□□□ -0.11
USP42-206ENST00000479544 DIS3Q9Y2L1 958 aaKnown RBP14.37□□□□□ -0.11
USP42-206ENST00000479544 KIF3CO14782 793 aa14.37□□□□□ -0.11
USP42-206ENST00000479544 CYTH3O43739 400 aa14.37□□□□□ -0.11
USP42-206ENST00000479544 FOSP01100 380 aaPredicted RBP14.37□□□□□ -0.11
USP42-206ENST00000479544 COILP38432 576 aaPredicted RBP14.37□□□□□ -0.11
USP42-206ENST00000479544 ALDH18A1P54886 795 aaKnown RBP14.37□□□□□ -0.11
USP42-206ENST00000479544 PSMC6P62333 389 aa14.37□□□□□ -0.11
USP42-206ENST00000479544 NOP14P78316 857 aaKnown RBP14.37□□□□□ -0.11
USP42-206ENST00000479544 LVRNQ6Q4G3 990 aa14.37□□□□□ -0.11
USP42-206ENST00000479544 NEDD1Q8NHV4 660 aa14.37□□□□□ -0.11
USP42-206ENST00000479544 EIF2AK1Q9BQI3 630 aaKnown RBP14.37□□□□□ -0.11
USP42-206ENST00000479544 B2RBV5 119 aa14.36□□□□□ -0.11
USP42-206ENST00000479544 TCP10L2B9ZVM9 353 aa14.36□□□□□ -0.11
USP42-206ENST00000479544 PDXKO00764 312 aa14.36□□□□□ -0.11
USP42-206ENST00000479544 COPEO14579 308 aa14.36□□□□□ -0.11
USP42-206ENST00000479544 STAM2O75886 525 aa14.36□□□□□ -0.11
USP42-206ENST00000479544 TAL1P17542 331 aaPredicted RBP14.36□□□□□ -0.11
USP42-206ENST00000479544 DRD4P21917 467 aa14.36□□□□□ -0.11
USP42-206ENST00000479544 MARK3P27448 753 aa14.36□□□□□ -0.11
USP42-206ENST00000479544 CCNHP51946 323 aaPredicted RBP14.36□□□□□ -0.11
USP42-206ENST00000479544 TMEM270Q6UE05 265 aa14.36□□□□□ -0.11
USP42-206ENST00000479544 KRT35Q92764 455 aa14.36□□□□□ -0.11
USP42-206ENST00000479544 ATP2A3Q93084 1043 aa14.36□□□□□ -0.11
USP42-206ENST00000479544 INPP4AQ96PE3 977 aaPredicted RBP14.36□□□□□ -0.11
USP42-206ENST00000479544 CENPKQ9BS16 269 aa14.36□□□□□ -0.11
USP42-206ENST00000479544 ARHGEF10LQ9HCE6 1279 aa14.36□□□□□ -0.11
USP42-206ENST00000479544 BLOC1S4Q9NUP1 217 aa14.36□□□□□ -0.11
USP42-206ENST00000479544 PHTF1Q9UMS5 762 aa14.36□□□□□ -0.11
USP42-206ENST00000479544 ATP2B4P23634 1241 aa14.36□□□□□ -0.11
USP42-206ENST00000479544 KCNA1Q09470 495 aa14.36□□□□□ -0.11
USP42-206ENST00000479544 DMP1Q13316 513 aaPredicted RBP14.36□□□□□ -0.11
USP42-206ENST00000479544 DBN1Q16643 649 aa14.36□□□□□ -0.11
USP42-206ENST00000479544 DNAJC24Q6P3W2 148 aa14.36□□□□□ -0.11
USP42-206ENST00000479544 TXNRD3Q86VQ6 643 aa14.36□□□□□ -0.11
USP42-206ENST00000479544 XXYLT1Q8NBI6 393 aa14.36□□□□□ -0.11
USP42-206ENST00000479544 MXD3Q9BW11 206 aa14.36□□□□□ -0.11
USP42-206ENST00000479544 COL14A1Q05707 1796 aaKnown RBP14.36□□□□□ -0.11
USP42-206ENST00000479544 SPECC1L-ADORA2AF8WAN1 911 aa14.36□□□□□ -0.11
USP42-206ENST00000479544 H3BRJ5 948 aa14.36□□□□□ -0.11
USP42-206ENST00000479544 DDX3XO00571 662 aaKnown RBP eCLIP14.36□□□□□ -0.119e-7■■■□□ 18.6
USP42-206ENST00000479544 BRD2P25440 801 aaKnown RBP14.36□□□□□ -0.11
USP42-206ENST00000479544 RFC5P40937 340 aa14.36□□□□□ -0.11
USP42-206ENST00000479544 LMNB2Q03252 620 aa14.36□□□□□ -0.11
USP42-206ENST00000479544 KRT81Q14533 505 aa14.36□□□□□ -0.11
USP42-206ENST00000479544 SLC15A2Q16348 729 aa14.36□□□□□ -0.11
USP42-206ENST00000479544 CDO1Q16878 200 aa14.36□□□□□ -0.11
USP42-206ENST00000479544 ABCB5Q2M3G0 1257 aa14.36□□□□□ -0.11
USP42-206ENST00000479544 OLFML2BQ68BL8 750 aa14.36□□□□□ -0.11
USP42-206ENST00000479544 RHPN2Q8IUC4 686 aa14.36□□□□□ -0.11
USP42-206ENST00000479544 AGGF1Q8N302 714 aaeCLIP14.36□□□□□ -0.11
USP42-206ENST00000479544 FLAD1Q8NFF5 587 aa14.36□□□□□ -0.11
USP42-206ENST00000479544 SLC16A10Q8TF71 515 aa14.36□□□□□ -0.11
USP42-206ENST00000479544 BAP1Q92560 729 aa14.36□□□□□ -0.11
USP42-206ENST00000479544 PPP1R36Q96LQ0 422 aa14.36□□□□□ -0.11
USP42-206ENST00000479544 PNMA5Q96PV4 448 aa14.36□□□□□ -0.11
USP42-206ENST00000479544 SEPT10Q9P0V9 454 aa14.36□□□□□ -0.11
USP42-206ENST00000479544 LOC100653049A0A140TA62 436 aa14.35□□□□□ -0.11
USP42-206ENST00000479544 NOL3O60936 208 aaKnown RBP14.35□□□□□ -0.11
USP42-206ENST00000479544 KRT34O76011 436 aa14.35□□□□□ -0.11
USP42-206ENST00000479544 KRT16P08779 473 aa14.35□□□□□ -0.11
USP42-206ENST00000479544 DARS2Q6PI48 645 aaKnown RBP14.35□□□□□ -0.11
USP42-206ENST00000479544 CLEC4GQ6UXB4 293 aa14.35□□□□□ -0.11
USP42-206ENST00000479544 MTDHQ86UE4 582 aaKnown RBP14.35□□□□□ -0.11
USP42-206ENST00000479544 SLC13A5Q86YT5 568 aaPredicted RBP14.35□□□□□ -0.11
USP42-206ENST00000479544 PI4K2AQ9BTU6 479 aa14.35□□□□□ -0.11
USP42-206ENST00000479544 WNT8AQ9H1J5 351 aa14.35□□□□□ -0.11
USP42-206ENST00000479544 NKRFO15226 690 aaKnown RBP eCLIP14.35□□□□□ -0.11
USP42-206ENST00000479544 ZBED4O75132 1171 aa14.35□□□□□ -0.11
USP42-206ENST00000479544 MED24O75448 989 aa14.35□□□□□ -0.11
USP42-206ENST00000479544 RNF8O76064 485 aa14.35□□□□□ -0.11
USP42-206ENST00000479544 TMEM253P0C7T8 217 aa14.35□□□□□ -0.11
USP42-206ENST00000479544 PAPOLAP51003 745 aaKnown RBP14.35□□□□□ -0.11
USP42-206ENST00000479544 ZNF354CQ86Y25 554 aa14.35□□□□□ -0.11
USP42-206ENST00000479544 MKNK1Q9BUB5 465 aa14.35□□□□□ -0.11
USP42-206ENST00000479544 DBNDD1Q9H9R9 158 aa14.35□□□□□ -0.11
USP42-206ENST00000479544 KMT5AQ9NQR1 393 aa14.35□□□□□ -0.11
USP42-206ENST00000479544 MCM8Q9UJA3 840 aa14.35□□□□□ -0.11
USP42-206ENST00000479544 TLR3O15455 904 aaKnown RBP14.35□□□□□ -0.11
USP42-206ENST00000479544 LPXNO60711 386 aa14.35□□□□□ -0.11
USP42-206ENST00000479544 MAGEA4P43358 317 aa14.35□□□□□ -0.11
USP42-206ENST00000479544 MRPS35P82673 323 aaKnown RBP14.35□□□□□ -0.11
USP42-206ENST00000479544 PADI6Q6TGC4 694 aa14.35□□□□□ -0.11
USP42-206ENST00000479544 TRMT10CQ7L0Y3 403 aaKnown RBP14.35□□□□□ -0.11
USP42-206ENST00000479544 YTHDF3Q7Z739 585 aaKnown RBP14.35□□□□□ -0.11
USP42-206ENST00000479544 NLRX1Q86UT6 975 aa14.35□□□□□ -0.11
USP42-206ENST00000479544 CATSPER3Q86XQ3 398 aa14.35□□□□□ -0.11
USP42-206ENST00000479544 COL23A1Q86Y22 540 aaPredicted RBP14.35□□□□□ -0.11
USP42-206ENST00000479544 ARHGEF26Q96DR7 871 aa14.35□□□□□ -0.11
USP42-206ENST00000479544 IFT172Q9UG01 1749 aa14.35□□□□□ -0.11
USP42-206ENST00000479544 TACC3Q9Y6A5 838 aa14.35□□□□□ -0.11
USP42-206ENST00000479544 CLRN2A0PK11 232 aa14.35□□□□□ -0.11
USP42-206ENST00000479544 EME2A4GXA9 379 aaPredicted RBP14.35□□□□□ -0.11
USP42-206ENST00000479544 ENTPD5O75356 428 aa14.35□□□□□ -0.11
USP42-206ENST00000479544 HADHQ16836 314 aaKnown RBP14.35□□□□□ -0.11
USP42-206ENST00000479544 ATL2Q8NHH9 583 aa14.35□□□□□ -0.11
USP42-206ENST00000479544 HSPH1Q92598 858 aa14.35□□□□□ -0.11
USP42-206ENST00000479544 RUSC1Q9BVN2 902 aa14.35□□□□□ -0.11
USP42-206ENST00000479544 NEU2Q9Y3R4 380 aa14.35□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms