RNA–Protein interactions for RNA: ENST00000475235.1

HLA-DOB-208, Transcript of major histocompatibility complex, class II, DO beta, humanhuman

Gene HLA-DOB, Length 1,514 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOB-208ENST00000475235 CCDC113Q9H0I3 377 aa12.66□□□□□ -0.38
HLA-DOB-208ENST00000475235 NXF3Q9H4D5 531 aaKnown RBP12.66□□□□□ -0.38
HLA-DOB-208ENST00000475235 MED4Q9NPJ6 270 aa12.66□□□□□ -0.38
HLA-DOB-208ENST00000475235 MAGEC2Q9UBF1 373 aaPredicted RBP12.66□□□□□ -0.38
HLA-DOB-208ENST00000475235 HES2Q9Y543 173 aa12.66□□□□□ -0.38
HLA-DOB-208ENST00000475235 FNDC1Q4ZHG4 1894 aaPredicted RBP12.66□□□□□ -0.38
HLA-DOB-208ENST00000475235 PER2O15055 1255 aa12.65□□□□□ -0.38
HLA-DOB-208ENST00000475235 MBTPS2O43462 519 aa12.65□□□□□ -0.38
HLA-DOB-208ENST00000475235 HIP1RO75146 1068 aa12.65□□□□□ -0.38
HLA-DOB-208ENST00000475235 DDHD2O94830 711 aa12.65□□□□□ -0.38
HLA-DOB-208ENST00000475235 SYT1P21579 422 aa12.65□□□□□ -0.38
HLA-DOB-208ENST00000475235 GUCY2CP25092 1073 aa12.65□□□□□ -0.38
HLA-DOB-208ENST00000475235 LONP1P36776 959 aaKnown RBP12.65□□□□□ -0.38
HLA-DOB-208ENST00000475235 UBA7P41226 1012 aa12.65□□□□□ -0.38
HLA-DOB-208ENST00000475235 SLC11A1P49279 550 aa12.65□□□□□ -0.38
HLA-DOB-208ENST00000475235 AFF1P51825 1210 aaKnown RBP12.65□□□□□ -0.38
HLA-DOB-208ENST00000475235 COASYQ13057 564 aa12.65□□□□□ -0.38
HLA-DOB-208ENST00000475235 SF3A1Q15459 793 aaKnown RBP12.65□□□□□ -0.38
HLA-DOB-208ENST00000475235 SMAD2Q15796 467 aaKnown RBP12.65□□□□□ -0.38
HLA-DOB-208ENST00000475235 RINT1Q6NUQ1 792 aa12.65□□□□□ -0.38
HLA-DOB-208ENST00000475235 TMEM184AQ6ZMB5 413 aa12.65□□□□□ -0.38
HLA-DOB-208ENST00000475235 CABP7Q86V35 215 aa12.65□□□□□ -0.38
HLA-DOB-208ENST00000475235 FAM178BQ8IXR5 827 aa12.65□□□□□ -0.38
HLA-DOB-208ENST00000475235 VPS52Q8N1B4 723 aa12.65□□□□□ -0.38
HLA-DOB-208ENST00000475235 SYT2Q8N9I0 419 aaPredicted RBP12.65□□□□□ -0.38
HLA-DOB-208ENST00000475235 TMEM87AQ8NBN3 555 aa12.65□□□□□ -0.38
HLA-DOB-208ENST00000475235 CALML4Q96GE6 196 aa12.65□□□□□ -0.38
HLA-DOB-208ENST00000475235 MSLNLQ96KJ4 702 aa12.65□□□□□ -0.38
HLA-DOB-208ENST00000475235 GAD1Q99259 594 aa12.65□□□□□ -0.38
HLA-DOB-208ENST00000475235 APOL6Q9BWW8 343 aa12.65□□□□□ -0.38
HLA-DOB-208ENST00000475235 CLEC1BQ9P126 229 aa12.65□□□□□ -0.38
HLA-DOB-208ENST00000475235 DNAJB4Q9UDY4 337 aa12.65□□□□□ -0.38
HLA-DOB-208ENST00000475235 FAN1Q9Y2M0 1017 aa12.65□□□□□ -0.38
HLA-DOB-208ENST00000475235 IRAK3Q9Y616 596 aa12.65□□□□□ -0.38
HLA-DOB-208ENST00000475235 CCDC169A6NNP5 214 aa12.64□□□□□ -0.39
HLA-DOB-208ENST00000475235 HIDE1A8MVS5 230 aa12.64□□□□□ -0.39
HLA-DOB-208ENST00000475235 K7ERI5 159 aa12.64□□□□□ -0.39
HLA-DOB-208ENST00000475235 NRP1O14786 923 aa12.64□□□□□ -0.39
HLA-DOB-208ENST00000475235 MAP3K13O43283 966 aa12.64□□□□□ -0.39
HLA-DOB-208ENST00000475235 GLP2RO95838 553 aa12.64□□□□□ -0.39
HLA-DOB-208ENST00000475235 CTSAP10619 480 aa12.64□□□□□ -0.39
HLA-DOB-208ENST00000475235 CA8P35219 290 aa12.64□□□□□ -0.39
HLA-DOB-208ENST00000475235 NPTX2P47972 431 aa12.64□□□□□ -0.39
HLA-DOB-208ENST00000475235 SCNN1GP51170 649 aa12.64□□□□□ -0.39
HLA-DOB-208ENST00000475235 PEX3P56589 373 aa12.64□□□□□ -0.39
HLA-DOB-208ENST00000475235 GRIK3Q13003 919 aa12.64□□□□□ -0.39
HLA-DOB-208ENST00000475235 CLUL1Q15846 466 aa12.64□□□□□ -0.39
HLA-DOB-208ENST00000475235 DCAF4L1Q3SXM0 396 aa12.64□□□□□ -0.39
HLA-DOB-208ENST00000475235 ZC3H12AQ5D1E8 599 aaKnown RBP12.64□□□□□ -0.39
HLA-DOB-208ENST00000475235 C1orf186Q6ZWK4 172 aa12.64□□□□□ -0.39
HLA-DOB-208ENST00000475235 KCNK18Q7Z418 384 aa12.64□□□□□ -0.39
HLA-DOB-208ENST00000475235 TMEM173Q86WV6 379 aaPredicted RBP12.64□□□□□ -0.39
HLA-DOB-208ENST00000475235 CDR2LQ86X02 465 aaPredicted RBP12.64□□□□□ -0.39
HLA-DOB-208ENST00000475235 GJD3Q8N144 294 aa12.64□□□□□ -0.39
HLA-DOB-208ENST00000475235 SNX21Q969T3 373 aa12.64□□□□□ -0.39
HLA-DOB-208ENST00000475235 PNMA5Q96PV4 448 aa12.64□□□□□ -0.39
HLA-DOB-208ENST00000475235 RPS6KC1Q96S38 1066 aa12.64□□□□□ -0.39
HLA-DOB-208ENST00000475235 POP1Q99575 1024 aaKnown RBP12.64□□□□□ -0.39
HLA-DOB-208ENST00000475235 KIFC3Q9BVG8 833 aa12.64□□□□□ -0.39
HLA-DOB-208ENST00000475235 RUSC1Q9BVN2 902 aa12.64□□□□□ -0.39
HLA-DOB-208ENST00000475235 ZBP1Q9H171 429 aa12.64□□□□□ -0.39
HLA-DOB-208ENST00000475235 PDZD7Q9H5P4 517 aa12.64□□□□□ -0.39
HLA-DOB-208ENST00000475235 PARP2Q9UGN5 583 aa12.64□□□□□ -0.39
HLA-DOB-208ENST00000475235 BARX2Q9UMQ3 279 aaPredicted RBP12.64□□□□□ -0.39
HLA-DOB-208ENST00000475235 KIAA1671Q9BY89 1806 aa12.64□□□□□ -0.39
HLA-DOB-208ENST00000475235 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP12.63□□□□□ -0.39
HLA-DOB-208ENST00000475235 C2orf71A6NGG8 1288 aa12.63□□□□□ -0.39
HLA-DOB-208ENST00000475235 CXCL14O95715 111 aa12.63□□□□□ -0.39
HLA-DOB-208ENST00000475235 SSBP05455 408 aaKnown RBP eCLIP12.63□□□□□ -0.39
HLA-DOB-208ENST00000475235 PLA2G4BP0C869 781 aa12.63□□□□□ -0.39
HLA-DOB-208ENST00000475235 AKAP5P24588 427 aa12.63□□□□□ -0.39
HLA-DOB-208ENST00000475235 PEX19P40855 299 aa12.63□□□□□ -0.39
HLA-DOB-208ENST00000475235 OR1G1P47890 313 aa12.63□□□□□ -0.39
HLA-DOB-208ENST00000475235 DSC1Q08554 894 aa12.63□□□□□ -0.39
HLA-DOB-208ENST00000475235 KCNC3Q14003 757 aa12.63□□□□□ -0.39
HLA-DOB-208ENST00000475235 TMEM119Q4V9L6 283 aa12.63□□□□□ -0.39
HLA-DOB-208ENST00000475235 CT47A1Q5JQC4 288 aaPredicted RBP12.63□□□□□ -0.39
HLA-DOB-208ENST00000475235 CCDC181Q5TID7 509 aa12.63□□□□□ -0.39
HLA-DOB-208ENST00000475235 ATF7IP2Q5U623 682 aa12.63□□□□□ -0.39
HLA-DOB-208ENST00000475235 ADHFE1Q8IWW8 467 aa12.63□□□□□ -0.39
HLA-DOB-208ENST00000475235 COLGALT2Q8IYK4 626 aa12.63□□□□□ -0.39
HLA-DOB-208ENST00000475235 DAW1Q8N136 415 aa12.63□□□□□ -0.39
HLA-DOB-208ENST00000475235 SMRP1Q8NCR6 262 aa12.63□□□□□ -0.39
HLA-DOB-208ENST00000475235 RASSF8Q8NHQ8 419 aa12.63□□□□□ -0.39
HLA-DOB-208ENST00000475235 CASP10Q92851 521 aa12.63□□□□□ -0.39
HLA-DOB-208ENST00000475235 SPATA32Q96LK8 384 aa12.63□□□□□ -0.39
HLA-DOB-208ENST00000475235 ZFP42Q96MM3 310 aa12.63□□□□□ -0.39
HLA-DOB-208ENST00000475235 ZSCAN16Q9H4T2 348 aaPredicted RBP12.63□□□□□ -0.39
HLA-DOB-208ENST00000475235 TMEM134Q9H6X4 195 aa12.63□□□□□ -0.39
HLA-DOB-208ENST00000475235 KMT5AQ9NQR1 393 aa12.63□□□□□ -0.39
HLA-DOB-208ENST00000475235 SSX2IPQ9Y2D8 614 aa12.63□□□□□ -0.39
HLA-DOB-208ENST00000475235 MUC3AQ02505 3323 aa12.63□□□□□ -0.39
HLA-DOB-208ENST00000475235 PPP1R12AO14974 1030 aaPredicted RBP12.62□□□□□ -0.39
HLA-DOB-208ENST00000475235 B4GALT3O60512 393 aa12.62□□□□□ -0.39
HLA-DOB-208ENST00000475235 IPO7O95373 1038 aaKnown RBP12.62□□□□□ -0.39
HLA-DOB-208ENST00000475235 HOXB8P17481 243 aaPredicted RBP12.62□□□□□ -0.39
HLA-DOB-208ENST00000475235 SSTR3P32745 418 aaPredicted RBP12.62□□□□□ -0.39
HLA-DOB-208ENST00000475235 SMTNP53814 917 aa12.62□□□□□ -0.39
HLA-DOB-208ENST00000475235 SLC12A3P55017 1021 aa12.62□□□□□ -0.39
HLA-DOB-208ENST00000475235 RESTQ13127 1097 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms