RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 OASLQ15646 514 aaKnown RBP5.73□□□□□ -1.49
SYNE1-220ENST00000471834 CCDC117Q8IWD4 279 aaPredicted RBP5.73□□□□□ -1.49
SYNE1-220ENST00000471834 DDX12PQ92771 950 aa5.73□□□□□ -1.49
SYNE1-220ENST00000471834 MAGOHBQ96A72 148 aaKnown RBP5.73□□□□□ -1.49
SYNE1-220ENST00000471834 RSRC1Q96IZ7 334 aaKnown RBP5.73□□□□□ -1.49
SYNE1-220ENST00000471834 VCPIP1Q96JH7 1222 aa5.73□□□□□ -1.49
SYNE1-220ENST00000471834 FAM20AQ96MK3 541 aa5.73□□□□□ -1.49
SYNE1-220ENST00000471834 P2RX7Q99572 595 aaKnown RBP5.73□□□□□ -1.49
SYNE1-220ENST00000471834 RTFDC1Q9BY42 306 aaPredicted RBP5.73□□□□□ -1.49
SYNE1-220ENST00000471834 FAM207AQ9NSI2 230 aaPredicted RBP5.73□□□□□ -1.49
SYNE1-220ENST00000471834 SMG5Q9UPR3 1016 aaKnown RBP5.73□□□□□ -1.49
SYNE1-220ENST00000471834 SLC4A4Q9Y6R1 1079 aa5.73□□□□□ -1.49
SYNE1-220ENST00000471834 PHF20L1A8MW92 1017 aa5.73□□□□□ -1.49
SYNE1-220ENST00000471834 RNF8O76064 485 aa5.73□□□□□ -1.49
SYNE1-220ENST00000471834 MYL4P12829 197 aa5.73□□□□□ -1.49
SYNE1-220ENST00000471834 ATP4AP20648 1035 aa5.73□□□□□ -1.49
SYNE1-220ENST00000471834 CCNFP41002 786 aa5.73□□□□□ -1.49
SYNE1-220ENST00000471834 CENPCQ03188 943 aa5.73□□□□□ -1.49
SYNE1-220ENST00000471834 APOFQ13790 326 aa5.73□□□□□ -1.49
SYNE1-220ENST00000471834 PIK3AP1Q6ZUJ8 805 aa5.73□□□□□ -1.49
SYNE1-220ENST00000471834 BRINP3Q76B58 766 aa5.73□□□□□ -1.49
SYNE1-220ENST00000471834 SPATA21Q7Z572 469 aa5.73□□□□□ -1.49
SYNE1-220ENST00000471834 CLNKQ7Z7G1 428 aa5.73□□□□□ -1.49
SYNE1-220ENST00000471834 CCDC114Q96M63 670 aa5.73□□□□□ -1.49
SYNE1-220ENST00000471834 GPAMQ9HCL2 828 aa5.73□□□□□ -1.49
SYNE1-220ENST00000471834 PLA2G6O60733 806 aa5.73□□□□□ -1.49
SYNE1-220ENST00000471834 ZC3H11AO75152 810 aaKnown RBP eCLIP5.73□□□□□ -1.49
SYNE1-220ENST00000471834 TSPY3P0CV98 308 aa5.73□□□□□ -1.49
SYNE1-220ENST00000471834 TSPY8P0CW00 308 aa5.73□□□□□ -1.49
SYNE1-220ENST00000471834 CHN1P15882 459 aa5.73□□□□□ -1.49
SYNE1-220ENST00000471834 RXRAP19793 462 aa5.73□□□□□ -1.49
SYNE1-220ENST00000471834 PLCB3Q01970 1234 aa5.73□□□□□ -1.49
SYNE1-220ENST00000471834 GCNT1Q02742 428 aa5.73□□□□□ -1.49
SYNE1-220ENST00000471834 MAP3K10Q02779 954 aa5.73□□□□□ -1.49
SYNE1-220ENST00000471834 PLA2G4FQ68DD2 849 aa5.73□□□□□ -1.49
SYNE1-220ENST00000471834 SLC30A9Q6PML9 568 aa5.73□□□□□ -1.49
SYNE1-220ENST00000471834 PHC3Q8NDX5 983 aa5.73□□□□□ -1.49
SYNE1-220ENST00000471834 PIGOQ8TEQ8 1089 aa5.73□□□□□ -1.49
SYNE1-220ENST00000471834 TBCCD1Q9NVR7 557 aa5.73□□□□□ -1.49
SYNE1-220ENST00000471834 PNMA2Q9UL42 364 aa5.73□□□□□ -1.49
SYNE1-220ENST00000471834 NOVA2Q9UNW9 492 aaKnown RBP5.73□□□□□ -1.49
SYNE1-220ENST00000471834 MYPNQ86TC9 1320 aa5.73□□□□□ -1.49
SYNE1-220ENST00000471834 CNTNAP2Q9UHC6 1331 aa5.73□□□□□ -1.49
SYNE1-220ENST00000471834 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP5.73□□□□□ -1.49
SYNE1-220ENST00000471834 F5H6K3 240 aa5.73□□□□□ -1.49
SYNE1-220ENST00000471834 CYP1A1P04798 512 aaPredicted RBP5.73□□□□□ -1.49
SYNE1-220ENST00000471834 KLRC2P26717 231 aa5.73□□□□□ -1.49
SYNE1-220ENST00000471834 PTPN4P29074 926 aa5.73□□□□□ -1.49
SYNE1-220ENST00000471834 GJC1P36383 396 aa5.73□□□□□ -1.49
SYNE1-220ENST00000471834 CDK7P50613 346 aa5.73□□□□□ -1.49
SYNE1-220ENST00000471834 GFPT1Q06210 699 aaPredicted RBP5.73□□□□□ -1.49
SYNE1-220ENST00000471834 STAT4Q14765 748 aa5.73□□□□□ -1.49
SYNE1-220ENST00000471834 C7orf26Q96N11 449 aa5.73□□□□□ -1.49
SYNE1-220ENST00000471834 PLIN2Q99541 437 aa5.73□□□□□ -1.49
SYNE1-220ENST00000471834 KCNK13Q9HB14 408 aa5.73□□□□□ -1.49
SYNE1-220ENST00000471834 TAS2R1Q9NYW7 299 aa5.73□□□□□ -1.49
SYNE1-220ENST00000471834 USP17L12C9JPN9 530 aa5.72□□□□□ -1.49
SYNE1-220ENST00000471834 USP17L21D6R901 530 aa5.72□□□□□ -1.49
SYNE1-220ENST00000471834 KRT16P08779 473 aa5.72□□□□□ -1.49
SYNE1-220ENST00000471834 RNASELQ05823 741 aaKnown RBP5.72□□□□□ -1.49
SYNE1-220ENST00000471834 HLTFQ14527 1009 aaKnown RBP eCLIP5.72□□□□□ -1.49
SYNE1-220ENST00000471834 ADRM1Q16186 407 aa5.72□□□□□ -1.49
SYNE1-220ENST00000471834 ARHGEF18Q6ZSZ5 1173 aa5.72□□□□□ -1.49
SYNE1-220ENST00000471834 RNF217Q8TC41 542 aa5.72□□□□□ -1.49
SYNE1-220ENST00000471834 UHRF1Q96T88 793 aaPredicted RBP5.72□□□□□ -1.49
SYNE1-220ENST00000471834 GSTTP1A0A1W2PQM5 241 aa5.72□□□□□ -1.49
SYNE1-220ENST00000471834 TSPY2A6NKD2 308 aa5.72□□□□□ -1.49
SYNE1-220ENST00000471834 EVI5O60447 810 aa5.72□□□□□ -1.49
SYNE1-220ENST00000471834 CAND2O75155 1236 aa5.72□□□□□ -1.49
SYNE1-220ENST00000471834 MMEP08473 750 aa5.72□□□□□ -1.49
SYNE1-220ENST00000471834 INHBBP09529 407 aa5.72□□□□□ -1.49
SYNE1-220ENST00000471834 CD151P48509 253 aa5.72□□□□□ -1.49
SYNE1-220ENST00000471834 PMS2P54278 862 aa5.72□□□□□ -1.49
SYNE1-220ENST00000471834 INHBCP55103 352 aa5.72□□□□□ -1.49
SYNE1-220ENST00000471834 PPARDQ03181 441 aa5.72□□□□□ -1.49
SYNE1-220ENST00000471834 SUSD4Q5VX71 490 aa5.72□□□□□ -1.49
SYNE1-220ENST00000471834 C1orf186Q6ZWK4 172 aa5.72□□□□□ -1.49
SYNE1-220ENST00000471834 PALB2Q86YC2 1186 aa5.72□□□□□ -1.49
SYNE1-220ENST00000471834 EPS8L1Q8TE68 723 aa5.72□□□□□ -1.49
SYNE1-220ENST00000471834 ACSS3Q9H6R3 686 aa5.72□□□□□ -1.49
SYNE1-220ENST00000471834 EHMT1Q9H9B1 1298 aa5.72□□□□□ -1.49
SYNE1-220ENST00000471834 SMARCAL1Q9NZC9 954 aa5.72□□□□□ -1.49
SYNE1-220ENST00000471834 SAP30BPQ9UHR5 308 aaKnown RBP5.72□□□□□ -1.49
SYNE1-220ENST00000471834 FAM189A1O60320 539 aa5.72□□□□□ -1.49
SYNE1-220ENST00000471834 CCNT2O60583 730 aaKnown RBP5.72□□□□□ -1.49
SYNE1-220ENST00000471834 GAS8O95995 478 aa5.72□□□□□ -1.49
SYNE1-220ENST00000471834 IFI35P80217 286 aaPredicted RBP5.72□□□□□ -1.49
SYNE1-220ENST00000471834 CDK16Q00536 496 aa5.72□□□□□ -1.49
SYNE1-220ENST00000471834 ARID5AQ03989 594 aa5.72□□□□□ -1.49
SYNE1-220ENST00000471834 KCNH2Q12809 1159 aa5.72□□□□□ -1.49
SYNE1-220ENST00000471834 PPP1R15BQ5SWA1 713 aa5.72□□□□□ -1.49
SYNE1-220ENST00000471834 UBAP2Q5T6F2 1119 aaKnown RBP5.72□□□□□ -1.49
SYNE1-220ENST00000471834 TCERG1LQ5VWI1 586 aa5.72□□□□□ -1.49
SYNE1-220ENST00000471834 AGMOQ6ZNB7 445 aa5.72□□□□□ -1.49
SYNE1-220ENST00000471834 ACAD11Q709F0 780 aa5.72□□□□□ -1.49
SYNE1-220ENST00000471834 RRAGAQ7L523 313 aa5.72□□□□□ -1.49
SYNE1-220ENST00000471834 DDX42Q86XP3 938 aaKnown RBP eCLIP5.72□□□□□ -1.49
SYNE1-220ENST00000471834 ZNF354CQ86Y25 554 aa5.72□□□□□ -1.49
SYNE1-220ENST00000471834 KRT12Q99456 494 aa5.72□□□□□ -1.49
SYNE1-220ENST00000471834 WDR83Q9BRX9 315 aaKnown RBP5.72□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms